rna10005, rna10005 (mRNA) Nannochloropsis gaditana

Overview
Namerna10005
Unique Namerna10005
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length279
Alignment locationKK037259.1:105553..107141 -

Link to JBrowse

Properties
Property NameValue
Productferritin
Orig transcript idgnl|cribi|Naga_100833g2.4292.mrna
Orig protein idgnl|cribi|Naga_100833g2.4292
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037259.1supercontigKK037259.1:105553..107141 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100833g2gene9707Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10005rna10005-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20700.1cds9974Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10005 ID=rna10005|Name=rna10005|organism=Nannochloropsis gaditana|type=mRNA|length=279bp
ATGGGACCGCAACCGAAACAAAAGAATAGAAGGAATGGAGCCGCAAATGA
CAGGTCTCGGTCTCTTTTCTCATGCGTGTGCACGTGTCGCGGTGGTCCAG
CAGGTAAAATTTTGCGCGCGGGTGGGAAAAGGAGGACACTTAAGGTGACG
CAAAGATTGTTCTTGGATTCGAGTGCGTGGTGCCACGCTTCCATAAGCAA
AGATTTCGTGTGGCGCAAGGGCTTTATTTCGGCCAAATTCCTTCCTTTTC
ATCTCTTTTTTTTCCCCTCCCCCTCTTGA
back to top

protein sequence of rna10005

>rna10005-protein ID=rna10005-protein|Name=rna10005|organism=Nannochloropsis gaditana|type=polypeptide|length=374bp
MSDNNGDCKSRGLFLWKVTLRCECLNVIIQVVNLLVLLLKTLVRTPGNAH
VRATDSRLLYIFSIFVLISTTLSNADALISSSMWCASSTAISRRIFRTSG
NARVRATDLGKSRLLYIWSIFVLILTTSSNADALISSSMWRGSSTAISRR
IFKLLNDQGNREFENSLTYTAFSHWFDYNELPGSASWCKTQAQEERGHAL
KILEHLSSRRIEDDVTGSEWETQEAERLQNVRGTNSNGDVPTESSEASER
EPDLGKLRSEAAPQKSKTFHWEQVPNIVLDVKGPFTTTFSDPIAIWRKAL
EQERYNSRKIFQIMAAARETQDYVTESLLMSYYIPEQLGEEKAVEEVLSN
TLLVMKRGPEFYYELDRSLPSKPH
back to top

mRNA from alignment at KK037259.1:105553..107141-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10005 ID=rna10005|Name=rna10005|organism=Nannochloropsis gaditana|type=mRNA|length=1589bp|location=Sequence derived from alignment at KK037259.1:105553..107141- (Nannochloropsis gaditana)
ATGTCGGACAACAATGGTGATTGCAAAAGTCGTGGTCTCTTTTTGTGGAA
GGTAACTCTGCGTTGTGAATGCCTTAATGTAATTATTCAAGTCGTCAACC
TCCTCGTACTACTGCTCAAGACATTGGTCAGAACTCCTGGAAACGCCCAC
GTGAGGGCTACCGATTCTCGTTTGCTCTACATATTTTCTATTTTTGTGTT
AATATCTACAACCCTTTCAAATGCAGACGCATTAATTTCTTCCAGCATGT
GGTGTGCTTCTTCTACCGCAATCAGCCGGCGCATCTTCAGAACTTCTGGA
AACGCCCGTGTGAGAGCTACTGATTTGGGAAAATCTCGTTTGCTCTACAT
ATGGTCTATTTTTGTGTTAATACTCACAACCTCTTCAAATGCAGACGCAT
TAATTTCTTCCAGCATGTGGCGTGGTTCATCCACCGCGATCAGCCGGCGC
ATCTTCAAGCTCCTCAACGACCAGGGCAACCGGGAATTCGAGAATTCTTT
GACCTACACCGCTTTTTCGCACTGGTTTGATTACAACGAGCTTCCAGGCA
GCGCGAGCTGGTGCAAGACGCAAGCGCAGGAAGAACGTGGGCACGCTTTG
AAAATTCTTGAACACTTGTCGTCACGTCGGATTGAGGACGACGTGACGGG
CTCGGAATGGGAAACACAGGAAGCCGAGCGGCTGCAAAACGTGCGAGGCA
CGAACAGCAATGGTGACGTACCAACGGAATCCAGTGAAGCATCCGAACGC
GAGCCCGACCTCGGCAAGCTGCGAAGCGAGGCAGCCCCCCAGAAGAGCAA
GACCTTTCACTGGGAACAGGTTCCCAACATTGTGTTGGACGTGAAGGGCC
CCTTTACCACCACATTTTCCGACCCGATTGCAATTTGGCGCAAAGCCCTC
GAGCAGGAACGTTACAACTCCCGAAAAATCTTTCAAATCATGGCCGCTGC
GCGTGAAACGCAGGACTATGTGACGGAGAGCCTCCTGATGTCATACTACA
TCCCCGAACAGTTGGGAGAAGAAAAAGCCGTGGAGGAGGTGCTGTCCAAT
ACGGTACGTGGGAGGGTGGGGCGGGCTTGCTGGTGGCAGGGTGGTTGGGA
GCCGGGAAAGGGAGGGACAGACAAGCAAGCAGGGGTGGACGGATACAAGG
TCTGTTTGAAGCATGGGCGACTCGAATAGCAAGAGAAAGATTCTTTTCGA
AACGGGCAAAGACAGCCGCACACCTTGGGGAGATTGTCCTCGTCGTGTCT
CCATGGGAGGGTGTATAAACCGGTCGACCAAGGGATTCTCACTTCGTGCA
CATGTCTCGCATTTTACAGCTTTTGGTTATGAAGCGCGGGCCAGAATTTT
ACTACGAGCTCGACCGGTCATTGCCATCCAAGCCGCACTAGGAGAGAACG
TGGACGGAGAAAGGGGGTCCAGCAAAATGCGAAGAGTAGAGACAAAAAGA
GGTGGGGAGGGGTGCGTGGGGAGATAAGAAGGTAGTTATGCGAAGGCCAT
GAGGTAAAGAGGCAAGGGAATAAGGTGTAGTCTATGTTATGGAGAGGGAC
GCTGCGCTAGGCTTTGGGACGGGCTCAAGGGCTAACGGG
back to top

Coding sequence (CDS) from alignment at KK037259.1:105553..107141-

>rna10005 ID=rna10005|Name=rna10005|organism=Nannochloropsis gaditana|type=CDS|length=2250bp|location=Sequence derived from alignment at KK037259.1:105553..107141- (Nannochloropsis gaditana)
CTTTTGGTTATGAAGCGCGGGCCAGAATTTTACTACGAGCTCGACCGGTC
ATTGCCATCCAAGCCGCACTAGATGTCGGACAACAATGGTGATTGCAAAA
GTCGTGGTCTCTTTTTGTGGAAGGTAACTCTGCGTTGTGAATGCCTTAAT
GTAATTATTCAAGTCGTCAACCTCCTCGTACTACTGCTCAAGACATTGGT
CAGAACTCCTGGAAACGCCCACGTGAGGGCTACCGATTCTCGTTTGCTCT
ACATATTTTCTATTTTTGTGTTAATATCTACAACCCTTTCAAATGCAGAC
GCATTAATTTCTTCCAGCATGTGGTGTGCTTCTTCTACCGCAATCAGCCG
GCGCATCTTCAGAACTTCTGGAAACGCCCGTGTGAGAGCTACTGATTTGG
GAAAATCTCGTTTGCTCTACATATGGTCTATTTTTGTGTTAATACTCACA
ACCTCTTCAAATGCAGACGCATTAATTTCTTCCAGCATGTGGCGTGGTTC
ATCCACCGCGATCAGCCGGCGCATCTTCAAGCTCCTCAACGACCAGGGCA
ACCGGGAATTCGAGAATTCTTTGACCTACACCGCTTTTTCGCACTGGTTT
GATTACAACGAGCTTCCAGGCAGCGCGAGCTGGTGCAAGACGCAAGCGCA
GGAAGAACGTGGGCACGCTTTGAAAATTCTTGAACACTTGTCGTCACGTC
GGATTGAGGACGACGTGACGGGCTCGGAATGGGAAACACAGGAAGCCGAG
CGGCTGCAAAACGTGCGAGGCACGAACAGCAATGGTGACGTACCAACGGA
ATCCAGTGAAGCATCCGAACGCGAGCCCGACCTCGGCAAGCTGCGAAGCG
AGGCAGCCCCCCAGAAGAGCAAGACCTTTCACTGGGAACAGGTTCCCAAC
ATTGTGTTGGACGTGAAGGGCCCCTTTACCACCACATTTTCCGACCCGAT
TGCAATTTGGCGCAAAGCCCTCGAGCAGGAACGTTACAACTCCCGAAAAA
TCTTTCAAATCATGGCCGCTGCGCGTGAAACGCAGGACTATGTGACGGAG
AGCCTCCTGATGTCATACTACATCCCCGAACAGTTGGGAGAAGAAAAAGC
CGTGGAGGAGGTGCTGTCCAATACGCTTTTGGTTATGAAGCGCGGGCCAG
AATTTTACTACGAGCTCGACCGGTCATTGCCATCCAAGCCGCACTAGATG
TCGGACAACAATGGTGATTGCAAAAGTCGTGGTCTCTTTTTGTGGAAGGT
AACTCTGCGTTGTGAATGCCTTAATGTAATTATTCAAGTCGTCAACCTCC
TCGTACTACTGCTCAAGACATTGGTCAGAACTCCTGGAAACGCCCACGTG
AGGGCTACCGATTCTCGTTTGCTCTACATATTTTCTATTTTTGTGTTAAT
ATCTACAACCCTTTCAAATGCAGACGCATTAATTTCTTCCAGCATGTGGT
GTGCTTCTTCTACCGCAATCAGCCGGCGCATCTTCAGAACTTCTGGAAAC
GCCCGTGTGAGAGCTACTGATTTGGGAAAATCTCGTTTGCTCTACATATG
GTCTATTTTTGTGTTAATACTCACAACCTCTTCAAATGCAGACGCATTAA
TTTCTTCCAGCATGTGGCGTGGTTCATCCACCGCGATCAGCCGGCGCATC
TTCAAGCTCCTCAACGACCAGGGCAACCGGGAATTCGAGAATTCTTTGAC
CTACACCGCTTTTTCGCACTGGTTTGATTACAACGAGCTTCCAGGCAGCG
CGAGCTGGTGCAAGACGCAAGCGCAGGAAGAACGTGGGCACGCTTTGAAA
ATTCTTGAACACTTGTCGTCACGTCGGATTGAGGACGACGTGACGGGCTC
GGAATGGGAAACACAGGAAGCCGAGCGGCTGCAAAACGTGCGAGGCACGA
ACAGCAATGGTGACGTACCAACGGAATCCAGTGAAGCATCCGAACGCGAG
CCCGACCTCGGCAAGCTGCGAAGCGAGGCAGCCCCCCAGAAGAGCAAGAC
CTTTCACTGGGAACAGGTTCCCAACATTGTGTTGGACGTGAAGGGCCCCT
TTACCACCACATTTTCCGACCCGATTGCAATTTGGCGCAAAGCCCTCGAG
CAGGAACGTTACAACTCCCGAAAAATCTTTCAAATCATGGCCGCTGCGCG
TGAAACGCAGGACTATGTGACGGAGAGCCTCCTGATGTCATACTACATCC
CCGAACAGTTGGGAGAAGAAAAAGCCGTGGAGGAGGTGCTGTCCAATACG
back to top
Synonyms
Publications