rna10003, rna10003 (mRNA) Nannochloropsis gaditana

Overview
Namerna10003
Unique Namerna10003
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length681
Alignment locationKK037259.1:104448..105400 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100833g4.4291.mrna
Orig protein idgnl|cribi|Naga_100833g4.4291
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037259.1supercontigKK037259.1:104448..105400 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100833g4gene9705Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10003rna10003-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20699.1cds9972Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10003 ID=rna10003|Name=rna10003|organism=Nannochloropsis gaditana|type=mRNA|length=681bp
ATGGTTTCGTTTGAATCTCATTTCTTTGAGGATTTCACTATCGACCCTCA
GCGAATCAACACAGAAGCAAGCCCCGGCATGATGGTTTCTTCTTCCGTCT
TCAGATCCTCGCATAGACGACAAGGCAGGCGCCACATGCTTGCACGACCT
TCCTTTGCGTGTATGTTTCTGCTGCTTGCCGTGGTCCTCCTTCTTTGCCC
CGTCATTGTGGGAGCTGCGGAGGAAGCAGCACCACCTGCTGTTGTGGAAG
CTGAGAAGCCTGATGCCGGTGAAAAGAAAGACAAACCGGCGGCAGCCCCG
GAGGCGAGTAAGCCGGAGGATGAAGCACCGAAAGACGCCCCTGCTCCAGC
TGAGCCCGCGAAAGAAGAGGCGGCCAAGGCGGAAGCGGACGTCCAACCGC
CGCCCGCCAAAGTCGAGGCACCTTCCGCGGAGGTGCCTGAGCAGAAGGCT
CCGGCACCGGAGCAGGCGGCGGCGGCGAAGGAGGTGACAGAACTGAAAGC
CGCCCTCGAAGCTTCCCAGAAGGAAACACAGGCTGCCGCCGAAGCGTCCA
AGAAGCAATTGGAAGAAAAAGAGGCCCAGAAATCAGCGACCGAGACCAAA
TTGAAGGAGTTGGAAGGACAACACGCTGGCCTTATCACGGAGCGGGACGC
ACTTAAGGAGCAACGAAGATCACGGCCTTGA
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protein sequence of rna10003

>rna10003-protein ID=rna10003-protein|Name=rna10003|organism=Nannochloropsis gaditana|type=polypeptide|length=89bp
MGRTHVGEEGRQGGTPPPGGEQGEGGSGAEVRVSREWCRGSSLEGVVQRF
ESRGSGAEVRVSREWCRGSSLEGVVQRFESRLRPGAVPG
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mRNA from alignment at KK037259.1:104448..105400+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10003 ID=rna10003|Name=rna10003|organism=Nannochloropsis gaditana|type=mRNA|length=953bp|location=Sequence derived from alignment at KK037259.1:104448..105400+ (Nannochloropsis gaditana)
cccccgccctcccttccaccctccctcccgctctccctcccatgctcCCT
CCGCTATGACAGGAAGTGATTGAAGACGACgataaggaggagaggctCAC
CAGCTCGGCCAGCCAGGTACctacctacctccctccctccctccttccct
tccttgccaccctcgctctctctccGCTGCGGAGGGGCATGCCGGAAGCT
TGTcatctcaccctccctccctccctcctcacccccttcccccccgtcct
cccccccgccctccccttccccccccttcaggCCTCCCGTTTCTCGCTCT
TCTccaaggtggtgggggcggcgggggacaTTGTGCGGGGCGGGGACTTG
GAGGCGGGTAAGAACGCGTGAGAACCGGCTTAGGAAGGTGGAAAAGAcag
gaagcaggaggcggaggtgtcAGGTCACATGGGCCGCACGCacgtggggg
aagagggaagacaagggggtacgccgcctccagggggcgaacaaggggag
ggagggagtggtgcAGAGGTTCGAGTCTCGAGGGAGTGGTGCAGAGGTTC
GAGTCTCGAGGGAGTGGTGCAGAGGTTCGAGTCTCGAGGGAGTGGTGCAG
AGGTTCGAGTCTCGAGGGAGTGGTGCAGAGGTTCGAGCCTCGAGGGAGTG
GTGCAGAGGTTCGAGTCTCGGTTGAGACCGGGAGCGGTCCCCGGGtaggg
gcaggagaagggaagggtccAGGTatcaagagggggaggggaaaaaaaag
agatgaaaaggaaggaattTGGCCGAAATAAAGCCCTTGCGCCACACGAA
ATCTTTGCTTATGGAAGCGTGGCACCACGCACTCGAATCCAAGAACAATC
TTTGCGTCACCTTAAgtgtcctccttttcccacccgcGCGCAAAATTTTA
CCTGCTGGACCACCGCGACACGTGCACACGCATGAGAAAAGAGACCGAGA
CCT
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Coding sequence (CDS) from alignment at KK037259.1:104448..105400+

>rna10003 ID=rna10003|Name=rna10003|organism=Nannochloropsis gaditana|type=CDS|length=270bp|location=Sequence derived from alignment at KK037259.1:104448..105400+ (Nannochloropsis gaditana)
ATGGGCCGCACGCacgtgggggaagagggaagacaagggggtacgccgcc
tccagggggcgaacaaggggagggagggagtggtgcAGAGGTTCGAGTCT
CGAGGGAGTGGTGCAGAGGTTCGAGTCTCGAGGGAGTGGTGCAGAGGTTC
GAGTCTCGAGGGAGTGGTGCAGAGGTTCGAGTCTCGAGGGAGTGGTGCAG
AGGTTCGAGCCTCGAGGGAGTGGTGCAGAGGTTCGAGTCTCGGTTGAGAC
CGGGAGCGGTCCCCGGGtag
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Synonyms
Publications