rna10002, rna10002 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna10002
Unique Name	rna10002
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	807
Alignment location	KK037259.1:102136..103903 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_101314g1.2635.mrna
Orig protein id	gnl\|cribi\|Naga_101314g1.2635
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037259.1	supercontig	KK037259.1:102136..103903 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101314g1	gene9704	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna10002	rna10002-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM20702.1	cds9971	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037259.1:102136..103903+
coding sequence from alignment at KK037259.1:102136..103903+

mRNA sequence

>rna10002 ID=rna10002|Name=rna10002|organism=Nannochloropsis gaditana|type=mRNA|length=807bp
AGCTGTTTCCGTCGCTCCTGGCCTTGCCGGCCTCAGCTCTCTCGGCGCAC
CCCGGCGACCTCCACGCCGTTCCCTGCGCCTCACCTCCTCGACACCGTCT
TCCAACGGGTCGATTTACCCGCCATGGCCCAGGAATTCCTCCAGGCATTC
ACGCGCGTGCACCGAGAGGGAGACCTAGACCGAGCCAAAGTCATTCAGAT
GCTCAACATTTGGCAGAACATGTCCATCATCGCGGCAGCCGACGTTAGCT
GCGGCCTAACCCGCGCCATCGCCGAGCTCCTCCACCTCCCTTCCACCGAC
CTCGCCCTCCTTCCCCCCTTCCTCCCCCCCTTCCTCGCCTCCCGGGCCTT
CCAAACCCAGCGGGCGGCCCTGATCCTTCATGCCCGAGAGCGGGCCGCGC
GGGCCAAGGAGGGGAAAGGGAGTCAAAGTCTGTTGAAGGAGAGCGTGGCG
TGGATGATGGCAGACGATGGGGTGGTGCCGCTCCTGATGATGTGTATGGA
CGGACCGCACATGCTCCTGCAGACCACGAACCGCCCGTACGACAAGCTCG
TCGCCGGCGCCCAGTCCTTGCACGAGCACTGCCTCCGAAAGAAAACCATC
CAGTTCCTCCTGATGGCTTCCCTGATCAGCCCTGACGACCGCAGCCTCTG
GTTCCGGTGCCTTGCCCACTCCCTCTTCACCAGCGAACGATACCGACACG
TCGCCGTCCTCGTCAAGCTCTTTGACGCGCAGGGCCAGATGCGTCTGTAT
CTGCACGAGGCCTCGCAGGTCCAGCTGGGGTTGGTCTGTGTGTATGGTCT
TGTGTGA

protein sequence of rna10002

>rna10002-protein ID=rna10002-protein|Name=rna10002|organism=Nannochloropsis gaditana|type=polypeptide|length=226bp
MVSFESHFFEDFTIDPQRINTEASPGMMVSSSVFRSSHRRQGRRHMLARP
SFACMFLLLAVVLLLCPVIVGAAEEAAPPAVVEAEKPDAGEKKDKPAAAP
EASKPEDEAPKDAPAPAEPAKEEAAKAEADVQPPPAKVEAPSAEVPEQKA
PAPEQAAAAKEVTELKAALEASQKETQAAAEASKKQLEEKEAQKSATETK
LKELEGQHAGLITERDALKEQRRSRP

mRNA from alignment at KK037259.1:102136..103903+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna10002 ID=rna10002|Name=rna10002|organism=Nannochloropsis gaditana|type=mRNA|length=1768bp|location=Sequence derived from alignment at KK037259.1:102136..103903+ (Nannochloropsis gaditana)
ATGGTTTCGTTTGAATCTCATTTCTTTGAGGTCAGTGTCACCCGTTCCAC
GGTGTGCCATGCAGAGATCTTCCCGACGTGTACTCTTCAGACCAAGCAAT
TTGTTTCCCTTGCAACTAATAATTACGATCGTACGGCTACCATAGGAATT
AATTTTGCTTCGGAATGCTCTTTAAAAGTGGTGGacgggtggagggagga
ggtaagagGCTCCGAATCATTCGCTCTCTGGGGGCGTATATGGGCCGACA
TGTAACGGCCAGCAGACCGTTACGTGTTTTGGCCAGCATTCAAAAATTAT
GGATCctgatttctttttccccgaATGCCCGCATGTAATAGCAATTCCCA
AGTACTCGTGACGCAGTAAGAGCGCGCATGACTGCTTTTGTCAGAGATGG
GATGATGGGTCATTCGGAGGTTTCCGCTGAGCacacttttttttcctcac
aGGATTTCACTATCGACCCTCAGCGAATCAACACAGAAGCAAGCCCCGGC
ATGATGGTTTCTTCTTCCGTCTTCAGATCCTCGCATAGACGACAAGGCAG
GCGCCACATGCTTGCACGACCTTCCTTTGCGTGTATGTTTCTGCTGCTTG
CCGGTACGTGCGATGGCTACAGCCTGTACTCTTTATGTGTCGTCCTCATT
CTTAAATCTCTAATTCACCACCCTGTCCTTATCCCAAGtggtcctccttc
tttgcccCGTCATTGTGGGAGCTGCGGAGGAAGCAGCACCACCTGCTGTT
GTGGAAGCTGAGAAGCCTGATGCCGGTGAAAAGAAAGACAAACCGGCGGC
AGCCCCGGAGGCGAGTAAGCCGGAGGATGAAGCACCGAAAGACGCCCCTG
CTCCAGCTGAGCCCGcgaaagaagaggcggccaaggTACGTAGGACTCAA
AGCAGGGACTAAGGGGGAACGTGAGGTcgacgaggcggggggcggatGAA
CGGGAACgcaaagggggggaaccTGGGAATCTCCGATACGGGAAGGACCA
GAACGCGTCCACGATCTCTTTGTCCTGTGCCTTCATTTTGCTTGGCACCC
CCTCGGATTTTCACAGGCGGAAGCGGACGTCCAACCGCCGCCCGCCAAAG
TCGAGGCACCTTCCGCGGAGGTGCCTGAGCAGAAGGCTCCGGGTAAGACT
AGAACGGGTCAACGTCTCCTTGAGTCGGCTGGGCGTGTTTTAAACGGCCC
ATTCCCCCGctatttccccccctttcccccttcgcctctctctcttcatG
CTCCTGCCCTCGGGTCACCCTTTCCTCATggcccctccatctccttcctt
gtctcaGCACCGgagcaggcggcggcggcgaaggaggtgacAGAACTGAA
AGCCGCCCTCGAAGCTTCCCAGAAGGAAACACAGGCTGCCGCCGAAGCGT
CCAAGAAGCaattggaagaaaaagaggcccAGAAATCAGCGACCGAGACC
AAATTGAAGGAGTTGGAAGGACAACACGCTGGCCTTATCACGGGTGAGTG
Atgaacctccctcccgccttccctccctccctccctccctccctctctcc
cttcctcccgttctcttcccctccctccctccctccctctcccattcTTT
GCCCCCCTCTTGCTCTTGCCaccccttctctcttttcaatTTTGAATCCT
CCTGCAacctgtcttcctccctctcacccagAGCGGGACGCACTTAAGGA
GCAGTTGAAATCGCTGAACAAGGTTTCGGCTGAACTCGCAGAGACCAAGA
CGAAGATCACGGCCTTGA

Coding sequence (CDS) from alignment at KK037259.1:102136..103903+

>rna10002 ID=rna10002|Name=rna10002|organism=Nannochloropsis gaditana|type=CDS|length=4767bp|location=Sequence derived from alignment at KK037259.1:102136..103903+ (Nannochloropsis gaditana)
ATGGTTTCGTTTGAATCTCATTTCTTTGAGGATTTCACTATCGACCCTCA
GCGAATCAACACAGAAGCAAGCCCCGGCATGATGGTTTCTTCTTCCGTCT
TCAGATCCTCGCATAGACGACAAGGCAGGCGCCACATGCTTGCACGACCT
TCCTTTGCGTGTATGTTTCTGCTGCTTGCCGtggtcctccttctttgccc
CGTCATTGTGGGAGCTGCGGAGGAAGCAGCACCACCTGCTGTTGTGGAAG
CTGAGAAGCCTGATGCCGGTGAAAAGAAAGACAAACCGGCGGCAGCCCCG
GAGGCGAGTAAGCCGGAGGATGAAGCACCGAAAGACGCCCCTGCTCCAGC
TGAGCCCGcgaaagaagaggcggccaagGCGGAAGCGGACGTCCAACCGC
CGCCCGCCAAAGTCGAGGCACCTTCCGCGGAGGTGCCTGAGCAGAAGGCT
CCGGCACCGgagcaggcggcggcggcgaaggaggtgacAGAACTGAAAGC
CGCCCTCGAAGCTTCCCAGAAGGAAACACAGGCTGCCGCCGAAGCGTCCA
AGAAGCaattggaagaaaaagaggcccAGAAATCAGCGACCGAGACCAAA
TTGAAGGAGTTGGAAGGACAACACGCTGGCCTTATCACGGAGCGGGACGC
ACTTAAGGAGCAACGAAGATCACGGCCTTGAATGGTTTCGTTTGAATCTC
ATTTCTTTGAGGATTTCACTATCGACCCTCAGCGAATCAACACAGAAGCA
AGCCCCGGCATGATGGTTTCTTCTTCCGTCTTCAGATCCTCGCATAGACG
ACAAGGCAGGCGCCACATGCTTGCACGACCTTCCTTTGCGTGTATGTTTC
TGCTGCTTGCCGtggtcctccttctttgcccCGTCATTGTGGGAGCTGCG
GAGGAAGCAGCACCACCTGCTGTTGTGGAAGCTGAGAAGCCTGATGCCGG
TGAAAAGAAAGACAAACCGGCGGCAGCCCCGGAGGCGAGTAAGCCGGAGG
ATGAAGCACCGAAAGACGCCCCTGCTCCAGCTGAGCCCGcgaaagaagag
gcggccaagGCGGAAGCGGACGTCCAACCGCCGCCCGCCAAAGTCGAGGC
ACCTTCCGCGGAGGTGCCTGAGCAGAAGGCTCCGGCACCGgagcaggcgg
cggcggcgaaggaggtgacAGAACTGAAAGCCGCCCTCGAAGCTTCCCAG
AAGGAAACACAGGCTGCCGCCGAAGCGTCCAAGAAGCaattggaagaaaa
agaggcccAGAAATCAGCGACCGAGACCAAATTGAAGGAGTTGGAAGGAC
AACACGCTGGCCTTATCACGGAGCGGGACGCACTTAAGGAGCAACGAAGA
TCACGGCCTTGAATGGTTTCGTTTGAATCTCATTTCTTTGAGGATTTCAC
TATCGACCCTCAGCGAATCAACACAGAAGCAAGCCCCGGCATGATGGTTT
CTTCTTCCGTCTTCAGATCCTCGCATAGACGACAAGGCAGGCGCCACATG
CTTGCACGACCTTCCTTTGCGTGTATGTTTCTGCTGCTTGCCGtggtcct
ccttctttgcccCGTCATTGTGGGAGCTGCGGAGGAAGCAGCACCACCTG
CTGTTGTGGAAGCTGAGAAGCCTGATGCCGGTGAAAAGAAAGACAAACCG
GCGGCAGCCCCGGAGGCGAGTAAGCCGGAGGATGAAGCACCGAAAGACGC
CCCTGCTCCAGCTGAGCCCGcgaaagaagaggcggccaagGCGGAAGCGG
ACGTCCAACCGCCGCCCGCCAAAGTCGAGGCACCTTCCGCGGAGGTGCCT
GAGCAGAAGGCTCCGGCACCGgagcaggcggcggcggcgaaggaggtgac
AGAACTGAAAGCCGCCCTCGAAGCTTCCCAGAAGGAAACACAGGCTGCCG
CCGAAGCGTCCAAGAAGCaattggaagaaaaagaggcccAGAAATCAGCG
ACCGAGACCAAATTGAAGGAGTTGGAAGGACAACACGCTGGCCTTATCAC
GGAGCGGGACGCACTTAAGGAGCAACGAAGATCACGGCCTTGAATGGTTT
CGTTTGAATCTCATTTCTTTGAGGATTTCACTATCGACCCTCAGCGAATC
AACACAGAAGCAAGCCCCGGCATGATGGTTTCTTCTTCCGTCTTCAGATC
CTCGCATAGACGACAAGGCAGGCGCCACATGCTTGCACGACCTTCCTTTG
CGTGTATGTTTCTGCTGCTTGCCGtggtcctccttctttgcccCGTCATT
GTGGGAGCTGCGGAGGAAGCAGCACCACCTGCTGTTGTGGAAGCTGAGAA
GCCTGATGCCGGTGAAAAGAAAGACAAACCGGCGGCAGCCCCGGAGGCGA
GTAAGCCGGAGGATGAAGCACCGAAAGACGCCCCTGCTCCAGCTGAGCCC
GcgaaagaagaggcggccaagGCGGAAGCGGACGTCCAACCGCCGCCCGC
CAAAGTCGAGGCACCTTCCGCGGAGGTGCCTGAGCAGAAGGCTCCGGCAC
CGgagcaggcggcggcggcgaaggaggtgacAGAACTGAAAGCCGCCCTC
GAAGCTTCCCAGAAGGAAACACAGGCTGCCGCCGAAGCGTCCAAGAAGCa
attggaagaaaaagaggcccAGAAATCAGCGACCGAGACCAAATTGAAGG
AGTTGGAAGGACAACACGCTGGCCTTATCACGGAGCGGGACGCACTTAAG
GAGCAACGAAGATCACGGCCTTGAATGGTTTCGTTTGAATCTCATTTCTT
TGAGGATTTCACTATCGACCCTCAGCGAATCAACACAGAAGCAAGCCCCG
GCATGATGGTTTCTTCTTCCGTCTTCAGATCCTCGCATAGACGACAAGGC
AGGCGCCACATGCTTGCACGACCTTCCTTTGCGTGTATGTTTCTGCTGCT
TGCCGtggtcctccttctttgcccCGTCATTGTGGGAGCTGCGGAGGAAG
CAGCACCACCTGCTGTTGTGGAAGCTGAGAAGCCTGATGCCGGTGAAAAG
AAAGACAAACCGGCGGCAGCCCCGGAGGCGAGTAAGCCGGAGGATGAAGC
ACCGAAAGACGCCCCTGCTCCAGCTGAGCCCGcgaaagaagaggcggcca
agGCGGAAGCGGACGTCCAACCGCCGCCCGCCAAAGTCGAGGCACCTTCC
GCGGAGGTGCCTGAGCAGAAGGCTCCGGCACCGgagcaggcggcggcggc
gaaggaggtgacAGAACTGAAAGCCGCCCTCGAAGCTTCCCAGAAGGAAA
CACAGGCTGCCGCCGAAGCGTCCAAGAAGCaattggaagaaaaagaggcc
cAGAAATCAGCGACCGAGACCAAATTGAAGGAGTTGGAAGGACAACACGC
TGGCCTTATCACGGAGCGGGACGCACTTAAGGAGCAACGAAGATCACGGC
CTTGAATGGTTTCGTTTGAATCTCATTTCTTTGAGGATTTCACTATCGAC
CCTCAGCGAATCAACACAGAAGCAAGCCCCGGCATGATGGTTTCTTCTTC
CGTCTTCAGATCCTCGCATAGACGACAAGGCAGGCGCCACATGCTTGCAC
GACCTTCCTTTGCGTGTATGTTTCTGCTGCTTGCCGtggtcctccttctt
tgcccCGTCATTGTGGGAGCTGCGGAGGAAGCAGCACCACCTGCTGTTGT
GGAAGCTGAGAAGCCTGATGCCGGTGAAAAGAAAGACAAACCGGCGGCAG
CCCCGGAGGCGAGTAAGCCGGAGGATGAAGCACCGAAAGACGCCCCTGCT
CCAGCTGAGCCCGcgaaagaagaggcggccaagGCGGAAGCGGACGTCCA
ACCGCCGCCCGCCAAAGTCGAGGCACCTTCCGCGGAGGTGCCTGAGCAGA
AGGCTCCGGCACCGgagcaggcggcggcggcgaaggaggtgacAGAACTG
AAAGCCGCCCTCGAAGCTTCCCAGAAGGAAACACAGGCTGCCGCCGAAGC
GTCCAAGAAGCaattggaagaaaaagaggcccAGAAATCAGCGACCGAGA
CCAAATTGAAGGAGTTGGAAGGACAACACGCTGGCCTTATCACGGAGCGG
GACGCACTTAAGGAGCAACGAAGATCACGGCCTTGAATGGTTTCGTTTGA
ATCTCATTTCTTTGAGGATTTCACTATCGACCCTCAGCGAATCAACACAG
AAGCAAGCCCCGGCATGATGGTTTCTTCTTCCGTCTTCAGATCCTCGCAT
AGACGACAAGGCAGGCGCCACATGCTTGCACGACCTTCCTTTGCGTGTAT
GTTTCTGCTGCTTGCCGtggtcctccttctttgcccCGTCATTGTGGGAG
CTGCGGAGGAAGCAGCACCACCTGCTGTTGTGGAAGCTGAGAAGCCTGAT
GCCGGTGAAAAGAAAGACAAACCGGCGGCAGCCCCGGAGGCGAGTAAGCC
GGAGGATGAAGCACCGAAAGACGCCCCTGCTCCAGCTGAGCCCGcgaaag
aagaggcggccaagGCGGAAGCGGACGTCCAACCGCCGCCCGCCAAAGTC
GAGGCACCTTCCGCGGAGGTGCCTGAGCAGAAGGCTCCGGCACCGgagca
ggcggcggcggcgaaggaggtgacAGAACTGAAAGCCGCCCTCGAAGCTT
CCCAGAAGGAAACACAGGCTGCCGCCGAAGCGTCCAAGAAGCaattggaa
gaaaaagaggcccAGAAATCAGCGACCGAGACCAAATTGAAGGAGTTGGA
AGGACAACACGCTGGCCTTATCACGGAGCGGGACGCACTTAAGGAGCAAC
GAAGATCACGGCCTTGA

Synonyms

Publications