rna10000, rna10000 (mRNA) Nannochloropsis gaditana

Overview
Namerna10000
Unique Namerna10000
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2232
Alignment locationKK037259.1:98382..99197 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100826g1.7069.mrna
Orig protein idgnl|cribi|Naga_100826g1.7069
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037259.1supercontigKK037259.1:98382..99197 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100826g1gene9702Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10000rna10000-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20704.1cds9969Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10000 ID=rna10000|Name=rna10000|organism=Nannochloropsis gaditana|type=mRNA|length=2232bp
CAGAAAATGGGACCACCAAGTGTGGATTGATACGGACAGAGAAGTGAACA
TGCGAGAGCCTGCACGCTAAAAAACGAAAACTTCCCGTCAGTCAAAAGGC
AGCAAAGCAACGGCTCCGCTTCCGTGATCGGGTTTATTTTAAAGGCAATA
TGAAATATTTCATTAAAGAGGTCATAAATGCGTGTTTTATTCGCAAACAA
CACCGCGGTACAAAGATTCTATTAACCCAAGAGCAGTATAGAGAGACTCG
ACGAACGTGTACTTTGACATAAAAGCACACGATAATATCAAGTCCTTCGG
CTTTTTCGGCTGCCCAACGGATGCACAGAAGAGCAGAGGCCCATTGCGAG
GAAGACGAAGGTTTGGTTCTCCGAATTTGTAGCTTTCATGGCTTCGAATG
CATGATGAGTCGTTGTCAAAGTAATTCTGCCTCCATCACAGGTGGAATGC
GGTCGTCGTTTGCAGCCCGACGGCGGGATGCTTTGGGATATCGGGTTCCC
GGAACGACGCTTCGCCTTCCTTATTCGTGGACGCTCGCTATGTTCGTCGG
GGTGGTCTGTATGCTGGCAGTGGTCATTTTTGCCGGTCGTTCCCTCACTG
TGGTGGGAGGGATCGATAATGAGAGAGAGGATGCGGGTTTGTACCCAGTG
TTGTCATGGACAGGTCATGGTAAGGACAAGAAGGCTCTGAAGGCCTCGGA
CGAGCAAGTCCTCCGACAAGAACTCCAGGAGTTGGAAGCGCGGATGGATG
AGCTCGAACGGGCGCGACGATCCATGCCGCGACCGCCGTTGACAACGACG
CATCATGTCTTGGAGGCCATGGAGGGGCAACATGCGGTGGAAAAGGCACG
CACAGACTCGAAACCCGTGCCCGGAGATGCTGACGACCACGAGCAAAAAA
GCGCCCAACATAAAATTAACCCCGCCGTACTCGGCACGGACAAGGCTGCG
GCCCACGGCGCGTTGGCCGCCAGCACGCAAACCCTCGGACCTGGACATAG
CCCCGAGGCGAAAGAGGGGGAGCATCTCCCTCCCCGTCAGGACCTGGAAA
AAGCGGACTCGCACGCGACAAACAACCCCCCTGCCACGGAAAGCGCGGCA
GCGTACGACAGTGACACTAGCCCCGTGCCTCTAGTGGACCCCACGGTCCT
GGGCCGGGACCCGCCCGCGTTGGACCATGCCGATATGCCGGGACTGTGCG
CGCACAAATCCGATGGGGATGAGGATGTTTTGCGCCGGATAGACGTCTGG
CCCTCGGCCGAGAAAGGGAAGCCACGCATCCTGTGTTTCAGCTACACCCT
GTCCACGGCCCACGCCGGCCCGGTTCAGAACCTCCGGAGGACTTGGGCAC
AGCGGTGCGACGGCTATGTGGCCTTCAGCAACCAGACGGACCCTCTCATC
CCGTCCGTGGACCTCAAGCACAAAGGCCCCGAGGCGTACGCGAACATGTG
GCAAAAGCTGCGGGCGGCCTGGATCTATTTGCACAAGCACCATCTCCAGG
ACTACGATTATTTCTTGGCGGGCGGGGACGACATCTTTGTGGTGGTGGAG
AACCTCCGCCGGTACCTCCTCTCGCCCGAAATCCTTGCGGCTACGAAGGA
GGGCACTGAACCCATCTTTCTCGGGCGGCCTTTTCGGCCGCCTGGCAGCG
ACATCGCCTTCAATTCTGGAGGCGCGGGTTTTGTCCTGAATGCGCCCGCC
CTCGACGTCTTGGGAAAAGAATTGCTCGGGCACGGAAAGAAGAAGCGTCT
GTGCCGCCCCAATCAGGTTGGCTTCTGGGAGGACGTGAACGTGGCCTTTT
GCCTGCACGAAGGCGGGGTCCACGTCTACAACGGCACCCAGGACGCCCAC
GGACGGGAACGTTTCCTCCCTTTCAAGCCAGGGCACCACCTTCGGTACCG
GGTGCCGCCTAAGCCGGACTGGTACGCTGTGTACACGAAGGAATGGGGTT
TAAAAACGGGTTTGGACTGTTGTTCGACGGAGGCCATCACTTTCCATTAC
GTAAAAGGGGATGATATGAAACGGTATCATGCCATCGTACACGGCATGTG
TCCCAATATCAAAGCCAGTGAGGGCGAGGTGGCACAGAGGGCTGTCGACG
CACGGAGATGAGGGAAATGGCGGAGGGTGTGGGGATTGTTTTGTAAAAAC
GACATAACTTTCGAAGTCACGTGCCGGTTATTGAGAAAATCCCACACGAA
AGTGCAATAGAAACTAGAAACTTTTCTTGAAT
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protein sequence of rna10000

>rna10000-protein ID=rna10000-protein|Name=rna10000|organism=Nannochloropsis gaditana|type=polypeptide|length=125bp
MESGDSSQVEPSTDARTTREATKEGLAGQKGPRKREGRGGIGIADPVSAN
GWLANEEVEVDEGGGEPGGKREVNTWAEGREVDMKQADGTVELQRRKRGR
RRDGGEDSDGGTREAGVALPRRDPS
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mRNA from alignment at KK037259.1:98382..99197+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10000 ID=rna10000|Name=rna10000|organism=Nannochloropsis gaditana|type=mRNA|length=816bp|location=Sequence derived from alignment at KK037259.1:98382..99197+ (Nannochloropsis gaditana)
ACAGGACGTACGCTTACCTCTTGGACTTTTTGAGACGAGGCTTGTGGCTT
GTACTGTAGTTGTTGGGATTGGGAAGCCGTGACGGAATTTTTCCGAGCAG
TCCCCCGACATCTGTCCTTgttcctccactgcccggaggagaaaggcgca
CAGTGGACTAGAaaacggggaaggaaaaaaaaattgtAAAGCAAGCACCC
TGAAATTTTCCGACAGCGGGGCGTCTTTTGGAAAAATCACGCGGTCGCAC
CTTACTTGTCGGAATCATGGCAGAATCAAACCAGAGGTGATGCACTGTCC
CTGCCTTTATTGTCCGCGTGCCCTTCAAAAATCCACGACATAGGCGCAAG
TAGACAGACACGTTGACATAGCCAGGAAATAGAGGGTGGCCGCGAAAatg
ggtggggaagagggcggtaGGAGGTAACGCGGACAAGGCGGATGGAGAGC
GGCGACAGCAGTCAGGTCGAGCCCTCGACCGATGCCAGGACGACAAGGGA
AGCCACAAAAGAAGGTCTTGCGGGCCAAAAAGGACCACGGAagcgcgaag
gaaggggcggcaTAGGTATTGCGGACCCCGTGAGCGCAAATGGGTGGCTG
GCGaatgaggaggtggaggtggatgagggtggaggggagccaggtgggaa
aagggaggtAAACACCTGggccgaagggagggaggtggacatgAAACAAG
CGGATGGTACGGTGGAAttgcagaggaggaagcggggcagAAGAcgcgac
ggaggggaggactcAGACGGGGGTACCAGAGAGGCAGgagtcgccctccc
ccgtcgtGACCCGAGT
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Coding sequence (CDS) from alignment at KK037259.1:98382..99197+

>rna10000 ID=rna10000|Name=rna10000|organism=Nannochloropsis gaditana|type=CDS|length=375bp|location=Sequence derived from alignment at KK037259.1:98382..99197+ (Nannochloropsis gaditana)
ATGGAGAGCGGCGACAGCAGTCAGGTCGAGCCCTCGACCGATGCCAGGAC
GACAAGGGAAGCCACAAAAGAAGGTCTTGCGGGCCAAAAAGGACCACGGA
agcgcgaaggaaggggcggcaTAGGTATTGCGGACCCCGTGAGCGCAAAT
GGGTGGCTGGCGaatgaggaggtggaggtggatgagggtggaggggagcc
aggtgggaaaagggaggtAAACACCTGggccgaagggagggaggtggaca
tgAAACAAGCGGATGGTACGGTGGAAttgcagaggaggaagcggggcagA
AGAcgcgacggaggggaggactcAGACGGGGGTACCAGAGAGGCAGgagt
cgccctcccccgtcgtGACCCGAGT
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Synonyms
Publications