rna100, rna100 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna100
Unique Name	rna100
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1708
Alignment location	CM002455.1:266835..268976 +

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Properties


Property Name	Value
Product	protein of unknown function DUF4033
Orig transcript id	gnl\|cribi\|Naga_100033g24.8410.mrna
Orig protein id	gnl\|cribi\|Naga_100033g24.8410
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:266835..268976 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100033g24	gene97	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna100	rna100-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30571.1	cds100	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:266835..268976+
coding sequence from alignment at CM002455.1:266835..268976+

mRNA sequence

>rna100 ID=rna100|Name=rna100|organism=Nannochloropsis gaditana|type=mRNA|length=1708bp
CATTTTCAACACTGTCAGGTGCAGAGAGGCATCCACAGTCCTGGGAGACA
GCGTGGGAATTCTCGGGCGTGGGATATGTGTCCAGACAGACGACGAAACT
CCTCGCTGAGTTCCTTTGGAGAGCGCCCATAGACCCCCCCCCGAGAGGTC
TTGCGTGGCGATCCAGGCACATTCACACGTCCATCGTCCACTCACCCGTG
ACCAGGGCATTCACAGGCAAAATGGAAAGAGCCGTGCGGGTCCGAGGCCG
GGACTTTCCTTCCAGCAGCCTTTGTGTGGTCAGCGCAACACAGAGAGCGT
CAGCTTCCTCAACAAGCCACAACGGGGGTCGGGAGGTGATCAAGATCGAG
ATACCAGCAGCTTGGTCAAAACCACGGAGTACTTACAGAAGGAGGCACTT
GCGGCTGATTGCCACCCATTTTTTCGTCTTAATTGTCTTGTGTGTCATCA
TAGGGCGTGCGTGTGCTTTTGCACCATTACATACCAGACGTATTGCCCTG
CCTACGTCCCCTTTTGCGTCTCGTCCACCTCCCAACTTCCGCAGATTTCT
TTTTGGTTTTGGCGGTAAAGACAGTCAAACGAATAAAAATAGTGGAAACT
CATCTTTGAAGCCAAAACCTTTTGCCCCAGAGCGCATGGTTAAATACAAC
GACGACATATTTGCGAAGATCTGGATATTTTTGTTCACCGGAAAAATTGC
GGCTGTAGTCGGTGCACCCTCTCCCCGTAACTTTATCCCGTACGAGGAAT
ACGTTCGTCTCTCTCGGTTACTGTTAAGAGGGGGCTCGACCAAGGCGAAG
TCTGCCGTTCTCTCTGTCCTTCGCTCCATCGCCTTCCCGGGCTTTTCCTC
TATTTTTCGGGCCTTGTTTCCAGGGTCGTCGCGGCTTGCTTGTGAATTTA
ATGCGCGCGTTACGCCAATCTTTTTCAGCTGGCTGGTTGGACCAGCAAAG
GTAGAAACTTCAGAAATGCTGAACCCGGTCACCGGCGCGCGGGAGCTATG
GTCTAACAGCGTCAAGATAGAGCGGTGCAGGTATCTAGAGAGTGTGCAAT
GCAAAGGCGCGTGCGTCAGCATCTGCAAGTTACCCACGCAAACTTTCTTC
ACGGAGGACCTGGGCATGCCCGTGACGATGACGCCCAATTTTGAGGACTT
GAGCTGTACGATGACATTCGGGACTGCTCCGTTGCCTATTGCGTCAGATC
CGGTTTGCTCGGAAGGGTGCTACAAAGAGTGCTCCACTGCAGTGACGTCG
AAACGAGTTTGTCCAGTTGTGACGTCAGCAGCAGATCGAAAATAGGAAAG
AAAGTGATGGAGTTGATATTCAGAGGGTACGTGTCTTCTAAAGCACGCGC
AGGTGGAAGGGAGCTGATAAGATCTTACGTAAGGTGTTGAGAGCAGCACA
CGTCCTGTCAGTTGAGATTCAGTATGTGTACTGGTGGAGGATATTCCTTG
CGCTGCTTACTGTGGTGTCCTTTTGCCCCTCATTTTCCGATTCTGGAGGA
TGAGCATTCCGTGGGCTTAAGGGATAAGGAATCTTGCTGATGACCTCAGC
CTCCAATAAGAAATTTGATAGGGCATAGCAGAACAACTTGTCATTCATAG
TCGTACCACATGATTGTCAAGACGATCCCTGGGACTGTTATTATTTAAAC
GTACAATAGATAAAGAGTCAACGAAAGAAATCTAGAAGAATATACGCGAA
AATTTTGG

protein sequence of rna100

>rna100-protein ID=rna100-protein|Name=rna100|organism=Nannochloropsis gaditana|type=polypeptide|length=357bp
MERAVRVRGRDFPSSSLCVVSATQRASASSTSHNGGREVIKIEIPAAWSK
PRSTYRRRHLRLIATHFFVLIVLCVIIGRACAFAPLHTRRIALPTSPFAS
RPPPNFRRFLFGFGGKDSQTNKNSGNSSLKPKPFAPERMVKYNDDIFAKI
WIFLFTGKIAAVVGAPSPRNFIPYEEYVRLSRLLLRGGSTKAKSAVLSVL
RSIAFPGFSSIFRALFPGSSRLACEFNARVTPIFFSWLVGPAKVETSEML
NPVTGARELWSNSVKIERCRYLESVQCKGACVSICKLPTQTFFTEDLGMP
VTMTPNFEDLSCTMTFGTAPLPIASDPVCSEGCYKECSTAVTSKRVCPVV
TSAADRK

mRNA from alignment at CM002455.1:266835..268976+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna100 ID=rna100|Name=rna100|organism=Nannochloropsis gaditana|type=mRNA|length=2142bp|location=Sequence derived from alignment at CM002455.1:266835..268976+ (Nannochloropsis gaditana)
CATTTTCAACACTGTCAGGTGCAGAGAGGCATCCACAGTCCTGGGAGACA
GCGTGGGAATTCTCGGGCGTGGGATATGTGTCCAGACAGACGACGAAACT
CCTCGCTGAGTTCCTTTGGAGAGCGCCCATAGACCCCCCCCCGAGAGGTC
TTGCGTGGCGATCCAGGCACATTCACACGTCCATCGTCCACTCACCCGTG
ACCAGGGCATTCACAGGCAAAATGGAAAGAGCCGTGCGGGTCCGAGGCCG
GGACTTTCCTTCCAGCAGCCTTTGTGTGGTCAGCGCAACACAGAGAGCGT
CAGCTTCCTCAACAAGCCACAACGGGGGTCGGGAGGTGATCAAGATCGAG
ATACCAGCAGCTTGGTCAAAACCACGGAGTACTTACAGAAGGAGGCACTT
GCGGCTGATTGCCACCCATTTTTTCGTCTTAATTGTCTTGTGTGTCATCA
TAGGGCGTGCGTGTGCTTTTGCACCATTACATACCAGACGTATTGCCCTG
CCTACGTCCCCTTTTGcgtctcgtccacctcccaaCTTCCGCAGATTTCT
TTTTGGTTTTGGCGGTAAAGACAGTCAAACGAATAAAAATAGTGGAAACT
CATCTTTGAAGCCAAAACCTTTTGCCCCAGAGCGCATGGTTAAATACAAC
GACGACATATTTGCGAAGATCTGGATATTTTTGTTCACCGGAAAAATTGC
GGCTGTAGTCGGtgcaccctctccccgtaACTTTATCCCGTACGAGGAAT
ACGTTCGTCTCTCTCGGTTACTGTTAAGAGGGGGCTCGACCAAGGCGAAG
TCTGCCGTTCTCTCTGTCCTTcgctccatcgccttcccggGCTTTTCCTC
TATTTTTCGGGCCTTGTTTCCAGGGTCGTCGCGGCTTGCTTGTGAATTTA
ATGCGCGCGTTACGCCAATCTTTTTCAGCTGGCTGGTTGGACCAGCAAAG
GTAGAAACTTCAGAAATGCTGAACCCGGTCACGTACGTGATAGAGCACGT
AgagtggtggtgatgggaggaagggaagaagacggtgtACGATCGCGATA
TCATTCCGGCCGTTCGGTTCAATAAGAAGCTTAATATTGAATCCTACAAC
ACGTATCTTTACGTTTCCCACCCATATCTTTCCACGCACACACGCACAAT
GTACCTGTGGTACCGTAACAGCGGCGCGCGGGAGCTATGGTCTAACAGCG
TCAAGATAGAGCGGTGCAGGTATCTAGAGAGTGTGCAATGCAAAGGCGCG
TGCGTCAGCATCTGCAAGTTACCCACGCAAACTTTCTTCACGGAGGACCT
GGGCATGCCCGTGACGATGACGCCCAATTTTGAGGACTTGAGGTAGGCGA
TACAGGACAAGAACGAGGTCATACAAGGTCATGGGCAGTGGAGGGTGAGG
CATAGCACAAATTGCAATTCAAACTTGAAGCATTGTGAGTTCTTAATTTA
TCTGTCTTAaatctttttccttccaagcTGTACGATGACATTCGGGACTG
CTCCGTTGCCTATTGCGTCAGATCCGGTTTGCTCGGAAGGGTGCTACAAA
GAGTGCTCCACTGCAGTGACGTCGAAACGAGTTTGTCCAGTTGTGACGTC
AGCAGCAGATCGAAAATAGGAAAGAAAGTGATGGAGTTGATATTCAGAGG
GTACGTGTCTTCTAAAGCACGcgcaggtggaagggagcTGATAAGATCTT
ACGTAAGGTGTTGAGAGCAGCACACGTCCTGTCAGTTGAGATTCAGTATG
TGTACTGGTGGAGGATATTCCTTGCGCTGCTTACTGTGGTGTCCTTTTGC
CCCTCATTTTCCGATTCTGGAGGATGAGCATTCCGTGGGCTTAAGGGATA
AGGAATCTTGCTGATGACCTCAGCCTCCAATAAGAAATTTGATAGGGCAT
AGCAGAACAACTTGTCATTCATAGGTATGAGTTTGGCTCGCTACAGCCCG
TGCCCACAGTTCAAACTTTGTCATGTGATCCGCCTCACTAACATGTAtca
caacctcctccctccttcctgtcacaTTTTTTAGTCGTACCACATGATTG
TCAAGACGATCCCTGGGACTGTTATTATTTAAACGTACAATAGATAAAGA
GTCAACGAAAGAAATCTAGAAGAATATACGCGAAAATTTTGG

Coding sequence (CDS) from alignment at CM002455.1:266835..268976+

>rna100 ID=rna100|Name=rna100|organism=Nannochloropsis gaditana|type=CDS|length=3222bp|location=Sequence derived from alignment at CM002455.1:266835..268976+ (Nannochloropsis gaditana)
ATGGAAAGAGCCGTGCGGGTCCGAGGCCGGGACTTTCCTTCCAGCAGCCT
TTGTGTGGTCAGCGCAACACAGAGAGCGTCAGCTTCCTCAACAAGCCACA
ACGGGGGTCGGGAGGTGATCAAGATCGAGATACCAGCAGCTTGGTCAAAA
CCACGGAGTACTTACAGAAGGAGGCACTTGCGGCTGATTGCCACCCATTT
TTTCGTCTTAATTGTCTTGTGTGTCATCATAGGGCGTGCGTGTGCTTTTG
CACCATTACATACCAGACGTATTGCCCTGCCTACGTCCCCTTTTGcgtct
cgtccacctcccaaCTTCCGCAGATTTCTTTTTGGTTTTGGCGGTAAAGA
CAGTCAAACGAATAAAAATAGTGGAAACTCATCTTTGAAGCCAAAACCTT
TTGCCCCAGAGCGCATGGTTAAATACAACGACGACATATTTGCGAAGATC
TGGATATTTTTGTTCACCGGAAAAATTGCGGCTGTAGTCGGtgcaccctc
tccccgtaACTTTATCCCGTACGAGGAATACGTTCGTCTCTCTCGGTTAC
TGTTAAGAGGGGGCTCGACCAAGGCGAAGTCTGCCGTTCTCTCTGTCCTT
cgctccatcgccttcccggGCTTTTCCTCTATTTTTCGGGCCTTGTTTCC
AGGGTCGTCGCGGCTTGCTTGTGAATTTAATGCGCGCGTTACGCCAATCT
TTTTCAGCTGGCTGGTTGGACCAGCAAAGGTAGAAACTTCAGAAATGCTG
AACCCGGTCACCGGCGCGCGGGAGCTATGGTCTAACAGCGTCAAGATAGA
GCGGTGCAGGTATCTAGAGAGTGTGCAATGCAAAGGCGCGTGCGTCAGCA
TCTGCAAGTTACCCACGCAAACTTTCTTCACGGAGGACCTGGGCATGCCC
GTGACGATGACGCCCAATTTTGAGGACTTGAGcTGTACGATGACATTCGG
GACTGCTCCGTTGCCTATTGCGTCAGATCCGGTTTGCTCGGAAGGGTGCT
ACAAAGAGTGCTCCACTGCAGTGACGTCGAAACGAGTTTGTCCAGTTGTG
ACGTCAGCAGCAGATCGAAAATAGATGGAAAGAGCCGTGCGGGTCCGAGG
CCGGGACTTTCCTTCCAGCAGCCTTTGTGTGGTCAGCGCAACACAGAGAG
CGTCAGCTTCCTCAACAAGCCACAACGGGGGTCGGGAGGTGATCAAGATC
GAGATACCAGCAGCTTGGTCAAAACCACGGAGTACTTACAGAAGGAGGCA
CTTGCGGCTGATTGCCACCCATTTTTTCGTCTTAATTGTCTTGTGTGTCA
TCATAGGGCGTGCGTGTGCTTTTGCACCATTACATACCAGACGTATTGCC
CTGCCTACGTCCCCTTTTGcgtctcgtccacctcccaaCTTCCGCAGATT
TCTTTTTGGTTTTGGCGGTAAAGACAGTCAAACGAATAAAAATAGTGGAA
ACTCATCTTTGAAGCCAAAACCTTTTGCCCCAGAGCGCATGGTTAAATAC
AACGACGACATATTTGCGAAGATCTGGATATTTTTGTTCACCGGAAAAAT
TGCGGCTGTAGTCGGtgcaccctctccccgtaACTTTATCCCGTACGAGG
AATACGTTCGTCTCTCTCGGTTACTGTTAAGAGGGGGCTCGACCAAGGCG
AAGTCTGCCGTTCTCTCTGTCCTTcgctccatcgccttcccggGCTTTTC
CTCTATTTTTCGGGCCTTGTTTCCAGGGTCGTCGCGGCTTGCTTGTGAAT
TTAATGCGCGCGTTACGCCAATCTTTTTCAGCTGGCTGGTTGGACCAGCA
AAGGTAGAAACTTCAGAAATGCTGAACCCGGTCACCGGCGCGCGGGAGCT
ATGGTCTAACAGCGTCAAGATAGAGCGGTGCAGGTATCTAGAGAGTGTGC
AATGCAAAGGCGCGTGCGTCAGCATCTGCAAGTTACCCACGCAAACTTTC
TTCACGGAGGACCTGGGCATGCCCGTGACGATGACGCCCAATTTTGAGGA
CTTGAGcTGTACGATGACATTCGGGACTGCTCCGTTGCCTATTGCGTCAG
ATCCGGTTTGCTCGGAAGGGTGCTACAAAGAGTGCTCCACTGCAGTGACG
TCGAAACGAGTTTGTCCAGTTGTGACGTCAGCAGCAGATCGAAAATAGAT
GGAAAGAGCCGTGCGGGTCCGAGGCCGGGACTTTCCTTCCAGCAGCCTTT
GTGTGGTCAGCGCAACACAGAGAGCGTCAGCTTCCTCAACAAGCCACAAC
GGGGGTCGGGAGGTGATCAAGATCGAGATACCAGCAGCTTGGTCAAAACC
ACGGAGTACTTACAGAAGGAGGCACTTGCGGCTGATTGCCACCCATTTTT
TCGTCTTAATTGTCTTGTGTGTCATCATAGGGCGTGCGTGTGCTTTTGCA
CCATTACATACCAGACGTATTGCCCTGCCTACGTCCCCTTTTGcgtctcg
tccacctcccaaCTTCCGCAGATTTCTTTTTGGTTTTGGCGGTAAAGACA
GTCAAACGAATAAAAATAGTGGAAACTCATCTTTGAAGCCAAAACCTTTT
GCCCCAGAGCGCATGGTTAAATACAACGACGACATATTTGCGAAGATCTG
GATATTTTTGTTCACCGGAAAAATTGCGGCTGTAGTCGGtgcaccctctc
cccgtaACTTTATCCCGTACGAGGAATACGTTCGTCTCTCTCGGTTACTG
TTAAGAGGGGGCTCGACCAAGGCGAAGTCTGCCGTTCTCTCTGTCCTTcg
ctccatcgccttcccggGCTTTTCCTCTATTTTTCGGGCCTTGTTTCCAG
GGTCGTCGCGGCTTGCTTGTGAATTTAATGCGCGCGTTACGCCAATCTTT
TTCAGCTGGCTGGTTGGACCAGCAAAGGTAGAAACTTCAGAAATGCTGAA
CCCGGTCACCGGCGCGCGGGAGCTATGGTCTAACAGCGTCAAGATAGAGC
GGTGCAGGTATCTAGAGAGTGTGCAATGCAAAGGCGCGTGCGTCAGCATC
TGCAAGTTACCCACGCAAACTTTCTTCACGGAGGACCTGGGCATGCCCGT
GACGATGACGCCCAATTTTGAGGACTTGAGcTGTACGATGACATTCGGGA
CTGCTCCGTTGCCTATTGCGTCAGATCCGGTTTGCTCGGAAGGGTGCTAC
AAAGAGTGCTCCACTGCAGTGACGTCGAAACGAGTTTGTCCAGTTGTGAC
GTCAGCAGCAGATCGAAAATAG

Synonyms

Publications