jgi.p|Nanoce1779_2|610392, mRNA_9995 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|610392
Unique NamemRNA_9995
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1310
Alignment locationscaffold_49:123013..124322 +

Link to JBrowse

Properties
Property NameValue
TranscriptId610478
TrackFilteredModels2
ProteinId610392
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:123013..124322 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610392gene_9995Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610392mRNA_9995-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9995CDS_9995Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9995 ID=mRNA_9995|Name=jgi.p|Nanoce1779_2|610392|organism=Nannochloropsis oceanica|type=mRNA|length=1310bp
GGCAAGTGCAAAATGCGAGTCGTGTGAGAAAGAGAATCACAAGTTACACC
TGCAGTAGCAGCAGCAGCAGCAGCAGTAGCAGCAGTAGCAGCAGTAGCAT
ATTTACTCAACAGCGGCAAGAGCAGCAGCTGCTTCAAGAAAAGGAACATC
AAGCATACCATTGGTCACACCACCGTCCTGTCCAGACCCCCACCGCTCGA
TCTGGCTTCAAAAGCGGCACCAGCAAAAGCAGCAAAAGCAAGAATGCCAA
CAGCAGTAGCGGTAGCTCCGGCAGCAGAAGCCTTCCCAGCTTACTTTCTT
CTCCTCATCGATACATGCGGGAGCTGGAGGAGCAATGCTTACTGACATCA
CAAGACCACGGCGCCGGACTTTCATGGCCACTGAAGATTTTCCCGCTGGC
ATCATTTACTCCTTTATCTTATAGCATCATTACCAACAGCAGTAGTAGTA
GCAGCATCAGAAGTTGTAGCGATATTAACAGCCGCAGCATTTTCCGATTT
GGACAAAAGCTGAAGTGCAGTCCTTCTTCCTGCCCGGGGAGTGCGCAGCC
TATCATCTTCGCCCTCTCTTCACAAACACCTTTCCAGCCGAAACCGTTTC
TCGTCTTTGCTTCACGGGATTCTGTGCACGTTTTTCTTCTCTTCCTCTTC
CTTCTCGCGTGGCGACGGTCTGTAGCAGCAGAAGTAAGGGTCGTTGCACC
ACTAGAAGAGTGCTCGCACTTCCAGCAACAACAGCAGGAACAGCAGTTGG
GGCAGCACCCTCGCCTTGAGGGGAGGGGCTCGTCAAGGTCCTTTTCTCTC
TTCACCCCGTCTCCCTCCTCATCTTCATTTTCAAACAGCACCATATCATC
GCCCGCAGCATCCTCCTCCTTCTCCTCTTCCTCCTCCTCCCCCTCAATCT
TCTCTTTCTCCCCCTTCTCTCCATCGTCGCCGCTATTAAAGCCTTATTGT
ATTTGCCTTAGGACGGACACGACCACCAGCGTTTATCTTTGGTGAGGGTC
CGATTGAGGGAGCGAGGGATGGAGGGCAAGGAAGTGAGATGGTTGGGATG
GATCGTTGGGCTGTACATGTGTATGAATCCTGGCTCTAACCCTCAGGCAT
GACCTGTTAGAAACTGGATGGGGAGGACGTTGGACAAGATAGTGTGTGCA
GCGTGTTTAAGAAGAGGGTGAGGAACAGCTTCACGGGAAAGTAAGGCTTT
CGGTTCCTTTTCTCGATTCTCGGTTAGCAATATAGTTTATCCCCTCCTTA
TTCCTTTTTTGATTCGTGTCTGTTTGAGCGGGAAAACTTCCGCATTGGCT
CTCTATATTT
back to top

protein sequence of jgi.p|Nanoce1779_2|610392

>mRNA_9995-protein ID=mRNA_9995-protein|Name=jgi.p|Nanoce1779_2|610392|organism=Nannochloropsis oceanica|type=polypeptide|length=227bp
MRELEEQCLLTSQDHGAGLSWPLKIFPLASFTPLSYSIITNSSSSSSIRS
CSDINSRSIFRFGQKLKCSPSSCPGSAQPIIFALSSQTPFQPKPFLVFAS
RDSVHVFLLFLFLLAWRRSVAAEVRVVAPLEECSHFQQQQQEQQLGQHPR
LEGRGSSRSFSLFTPSPSSSSFSNSTISSPAASSSFSSSSSSPSIFSFSP
FSPSSPLLKPYCICLRTDTTTSVYLW*
back to top

mRNA from alignment at scaffold_49:123013..124322+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9995 ID=mRNA_9995|Name=jgi.p|Nanoce1779_2|610392|organism=Nannochloropsis oceanica|type=mRNA|length=1310bp|location=Sequence derived from alignment at scaffold_49:123013..124322+ (Nannochloropsis oceanica)
GGCAAGTGCAAAATGCGAGTCGTGTGAGAAAGAGAATCACAAGTTACACC
TGCAGTAGCAGCAGCAGCAGCAGCAGTAGCAGCAGTAGCAGCAGTAGCAT
ATTTACTCAACAGCGGCAAGAGCAGCAGCTGCTTCAAGAAAAGGAACATC
AAGCATACCATTGGTCACACCACCGTCCTGTCCAGACCCCCACCGCTCGA
TCTGGCTTCAAAAGCGGCACCAGCAAAAGCAGCAAAAGCAAGAATGCCAA
CAGCAGTAGCGGTAGCTCCGGCAGCAGAAGCCTTCCCAGCTTACTTTCTT
CTCCTCATCGATACATGCGGGAGCTGGAGGAGCAATGCTTACTGACATCA
CAAGACCACGGCGCCGGACTTTCATGGCCACTGAAGATTTTCCCGCTGGC
ATCATTTACTCCTTTATCTTATAGCATCATTACCAACAGCAGTAGTAGTA
GCAGCATCAGAAGTTGTAGCGATATTAACAGCCGCAGCATTTTCCGATTT
GGACAAAAGCTGAAGTGCAGTCCTTCTTCCTGCCCGGGGAGTGCGCAGCC
TATCATCTTCGCCCTCTCTTCACAAACACCTTTCCAGCCGAAACCGTTTC
TCGTCTTTGCTTCACGGGATTCTGTGCACGTTTTTCTTCTCTTCCTCTTC
CTTCTCGCGTGGCGACGGTCTGTAGCAGCAGAAGTAAGGGTCGTTGCACC
ACTAGAAGAGTGCTCGCACTTCCAGCAACAACAGCAGGAACAGCAGTTGG
GGCAGCACCCTCGCCTTGAGGGGAGGGGCTCGTCAAGGTCCTTTTCTCTC
TTCACCCCGTCTCCCTCCTCATCTTCATTTTCAAACAGCACCATATCATC
GCCCGCAGCATCCTCCTCCTTCTCCTCTTCCTCCTCCTCCCCCTCAATCT
TCTCTTTCTCCCCCTTCTCTCCATCGTCGCCGCTATTAAAGCCTTATTGT
ATTTGCCTTAGGACGGACACGACCACCAGCGTTTATCTTTGGTGAGGGTC
CGATTGAGGGAGCGAGGGATGGAGGGCAAGGAAGTGAGATGGTTGGGATG
GATCGTTGGGCTGTACATGTGTATGAATCCTGGCTCTAACCCTCAGGCAT
GACCTGTTAGAAACTGGATGGGGAGGACGTTGGACAAGATAGTGTGTGCA
GCGTGTTTAAGAAGAGGGTGAGGAACAGCTTCACGGGAAAGTAAGGCTTT
CGGTTCCTTTTCTCGATTCTCGGTTAGCAATATAGTTTATCCCCTCCTTA
TTCCTTTTTTGATTCGTGTCTGTTTGAGCGGGAAAACTTCCGCATTGGCT
CTCTATATTT
back to top

Coding sequence (CDS) from alignment at scaffold_49:123013..124322+

>mRNA_9995 ID=mRNA_9995|Name=jgi.p|Nanoce1779_2|610392|organism=Nannochloropsis oceanica|type=CDS|length=681bp|location=Sequence derived from alignment at scaffold_49:123013..124322+ (Nannochloropsis oceanica)
ATGCGGGAGCTGGAGGAGCAATGCTTACTGACATCACAAGACCACGGCGC
CGGACTTTCATGGCCACTGAAGATTTTCCCGCTGGCATCATTTACTCCTT
TATCTTATAGCATCATTACCAACAGCAGTAGTAGTAGCAGCATCAGAAGT
TGTAGCGATATTAACAGCCGCAGCATTTTCCGATTTGGACAAAAGCTGAA
GTGCAGTCCTTCTTCCTGCCCGGGGAGTGCGCAGCCTATCATCTTCGCCC
TCTCTTCACAAACACCTTTCCAGCCGAAACCGTTTCTCGTCTTTGCTTCA
CGGGATTCTGTGCACGTTTTTCTTCTCTTCCTCTTCCTTCTCGCGTGGCG
ACGGTCTGTAGCAGCAGAAGTAAGGGTCGTTGCACCACTAGAAGAGTGCT
CGCACTTCCAGCAACAACAGCAGGAACAGCAGTTGGGGCAGCACCCTCGC
CTTGAGGGGAGGGGCTCGTCAAGGTCCTTTTCTCTCTTCACCCCGTCTCC
CTCCTCATCTTCATTTTCAAACAGCACCATATCATCGCCCGCAGCATCCT
CCTCCTTCTCCTCTTCCTCCTCCTCCCCCTCAATCTTCTCTTTCTCCCCC
TTCTCTCCATCGTCGCCGCTATTAAAGCCTTATTGTATTTGCCTTAGGAC
GGACACGACCACCAGCGTTTATCTTTGGTGA
back to top
Synonyms
Publications