jgi.p|Nanoce1779_2|610391, mRNA_9994 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|610391
Unique NamemRNA_9994
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length765
Alignment locationscaffold_49:122242..123006 +

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Properties
Property NameValue
TranscriptId610477
TrackFilteredModels2
ProteinId610391
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:122242..123006 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610391gene_9994Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610391mRNA_9994-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9994CDS_9994Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9994 ID=mRNA_9994|Name=jgi.p|Nanoce1779_2|610391|organism=Nannochloropsis oceanica|type=mRNA|length=765bp
ACAGCCTGCAGGGTGCAGAAAGGGCTACTTCATATGCCTTCATCTGCCTC
CTGAGCCTTGTGTCCCGTCCTTTATGACAACAAGCACCCTGACAAGCGCT
CGCCTGCATCTTCCTCCCTTCTCCCACTTTGGCACCTGGCTTCCATCGTC
GCTCCATCACCAACCCAGGTCTCCACTCACTGATACTCTTCGCGATCAGG
AACTCTGATGGCTCGTTGCATGATTCGCGGAGTGCGGCCTCCCCCCGCTC
CACTCCCTCGCCCGACATTTGATGCCTATGTCTCTCCTCCCGCTGAGGAG
GTCCTGTGCTCAATCTGCATGCAGGTCCTCCATCGACCCCTCACCAGGCC
CTGCAACCACATCTTCTGTCTCAACTGCATTCATAACTGGGCTACGTAAG
CATCCCACGTGTCCCTTCGATCGCTCCGAGCTCAAGCGTGATGACCTCAG
GCCTGCCTCTGATGATATGCAAGCGATTCTCCAGGCCCTAGACTGTCCGG
TGTCCCATCCATTAAGATCGGTGCTACTTCATTGTCGACTCAAAGACTTG
CTTGCGCGCACACATACAACTTGAATGTCGGGTGCCTAAATGGCTTAAGC
CCTGGCCCTGTGTCGCCACGACAGATGTTGCAAGAAACGAGGCAGTTGTT
GAAGAGGCGCAGAAACAGCAGCCGCAGCCGCAGCAGCAGTCGCAGCAGCA
GCAACAGCAGCAGGGTTTGAATGTCAGAGCGCCTACTGCCTCTCGTCAAC
GTAGGTGGCAGGTGC
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protein sequence of jgi.p|Nanoce1779_2|610391

>mRNA_9994-protein ID=mRNA_9994-protein|Name=jgi.p|Nanoce1779_2|610391|organism=Nannochloropsis oceanica|type=polypeptide|length=64bp
MARCMIRGVRPPPAPLPRPTFDAYVSPPAEEVLCSICMQVLHRPLTRPCN
HIFCLNCIHNWAT*
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mRNA from alignment at scaffold_49:122242..123006+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9994 ID=mRNA_9994|Name=jgi.p|Nanoce1779_2|610391|organism=Nannochloropsis oceanica|type=mRNA|length=765bp|location=Sequence derived from alignment at scaffold_49:122242..123006+ (Nannochloropsis oceanica)
ACAGCCTGCAGGGTGCAGAAAGGGCTACTTCATATGCCTTCATCTGCCTC
CTGAGCCTTGTGTCCCGTCCTTTATGACAACAAGCACCCTGACAAGCGCT
CGCCTGCATCTTCCTCCCTTCTCCCACTTTGGCACCTGGCTTCCATCGTC
GCTCCATCACCAACCCAGGTCTCCACTCACTGATACTCTTCGCGATCAGG
AACTCTGATGGCTCGTTGCATGATTCGCGGAGTGCGGCCTCCCCCCGCTC
CACTCCCTCGCCCGACATTTGATGCCTATGTCTCTCCTCCCGCTGAGGAG
GTCCTGTGCTCAATCTGCATGCAGGTCCTCCATCGACCCCTCACCAGGCC
CTGCAACCACATCTTCTGTCTCAACTGCATTCATAACTGGGCTACGTAAG
CATCCCACGTGTCCCTTCGATCGCTCCGAGCTCAAGCGTGATGACCTCAG
GCCTGCCTCTGATGATATGCAAGCGATTCTCCAGGCCCTAGACTGTCCGG
TGTCCCATCCATTAAGATCGGTGCTACTTCATTGTCGACTCAAAGACTTG
CTTGCGCGCACACATACAACTTGAATGTCGGGTGCCTAAATGGCTTAAGC
CCTGGCCCTGTGTCGCCACGACAGATGTTGCAAGAAACGAGGCAGTTGTT
GAAGAGGCGCAGAAACAGCAGCCGCAGCCGCAGCAGCAGTCGCAGCAGCA
GCAACAGCAGCAGGGTTTGAATGTCAGAGCGCCTACTGCCTCTCGTCAAC
GTAGGTGGCAGGTGC
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Coding sequence (CDS) from alignment at scaffold_49:122242..123006+

>mRNA_9994 ID=mRNA_9994|Name=jgi.p|Nanoce1779_2|610391|organism=Nannochloropsis oceanica|type=CDS|length=192bp|location=Sequence derived from alignment at scaffold_49:122242..123006+ (Nannochloropsis oceanica)
ATGGCTCGTTGCATGATTCGCGGAGTGCGGCCTCCCCCCGCTCCACTCCC
TCGCCCGACATTTGATGCCTATGTCTCTCCTCCCGCTGAGGAGGTCCTGT
GCTCAATCTGCATGCAGGTCCTCCATCGACCCCTCACCAGGCCCTGCAAC
CACATCTTCTGTCTCAACTGCATTCATAACTGGGCTACGTAA
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Synonyms
Publications