jgi.p|Nanoce1779_2|610390, mRNA_9993 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|610390
Unique Name	mRNA_9993
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	936
Alignment location	scaffold_49:120245..121713 +

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Properties


Property Name	Value
TranscriptId	610476
Track	FilteredModels2
ProteinId	610390

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_49	supercontig	scaffold_49:120245..121713 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|610390	gene_9993	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|610390	mRNA_9993-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9993	CDS_9993	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_49:120245..121713+
coding sequence from alignment at scaffold_49:120245..121713+

mRNA sequence

>mRNA_9993 ID=mRNA_9993|Name=jgi.p|Nanoce1779_2|610390|organism=Nannochloropsis oceanica|type=mRNA|length=936bp
ACAGAACCACAGCGCCATCCACGATGCTGGCCCGGGCAGTCCAAGTGGCC
GTGAGGTGCCGGGGGGGCGCCGTGGCAGCCCTTCGAAATGGGAGCATCCC
CGCCGTTGTCGCCACTGCTCCCATTCGATGCCTTGCCAGCACTCCAGTCA
CGGAAACGGACGAATACATCATCTTCCCTCGCGAGGCTCCCGGCCTGGAC
TACAAGCTAAACTGGTCGTTGAACGGCGACGATGTCACACCGGCCGGCAA
TGCCTACCGTAATTTAGACGCATCTCAATTGAAGGGGAAGAAGGCAGGAA
AGGAGGGAGGGAAGGAGGTCAAGCTGCTCGAGGCAGGGGATACGGTGCCT
TTCGAGACGTTTGATGCACATTTGGCGGATGTGAAGGCGACGTTGGAAAA
AGCCACCGATTTGTATGTAGAAGATGGCTCCAGCAAAGGCGGTGCTTTTA
ACGTGCGTGTCATAGCCGACAGCCCCGCCTACGCCCTGGCTGCAAAGGCT
TTGTTGGAACAAGCACAAACCAGAAGTAGCTCCTGGCCATTCACCAAGAG
TGTGGTTGTGTATGCTGCGGGGGGCGCCAAGGCGTTTGCTGGCGTGATGT
TTTCGGGGGGGAAGGCAGGGGAGGTGACTGGTGCGACGGTGGCGTTGGGT
GGCGTCCCGGCCACGGCAATCAAGAGTGCGATGAGCCTGGTGGCGGAAGC
GATGAAGAAGTGAAGGCCATCACATCACAAAGAACAAGAGGGTGGCCATT
TTATAGCAGATTGTTGAAATAGTGCAGTGATTGTGTGGCTCCGCTAGGGG
GAAGGGAGGAGGGAGGGAAGGATAGAGGAAGGGAGGAGGGAGCTGCAGAC
TTGTGTATGACTGATGATTTACGTGCCCGGTGGCGGACGAAGGACACGAT
AAAGAAAGAAAAGACGAAACTCACATGAGGTACTCG

protein sequence of jgi.p|Nanoce1779_2|610390

>mRNA_9993-protein ID=mRNA_9993-protein|Name=jgi.p|Nanoce1779_2|610390|organism=Nannochloropsis oceanica|type=polypeptide|length=230bp
MLARAVQVAVRCRGGAVAALRNGSIPAVVATAPIRCLASTPVTETDEYII
FPREAPGLDYKLNWSLNGDDVTPAGNAYRNLDASQLKGKKAGKEGGKEVK
LLEAGDTVPFETFDAHLADVKATLEKATDLYVEDGSSKGGAFNVRVIADS
PAYALAAKALLEQAQTRSSSWPFTKSVVVYAAGGAKAFAGVMFSGGKAGE
VTGATVALGGVPATAIKSAMSLVAEAMKK*

mRNA from alignment at scaffold_49:120245..121713+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9993 ID=mRNA_9993|Name=jgi.p|Nanoce1779_2|610390|organism=Nannochloropsis oceanica|type=mRNA|length=1469bp|location=Sequence derived from alignment at scaffold_49:120245..121713+ (Nannochloropsis oceanica)
ACAGAACCACAGCGCCATCCACGATGCTGGCCCGGGCAGTCCAAGTGGCC
GTGAGGTGCCGGGGGGGCGCCGTGGCAGCCCTTCGAAATGGGAGCATCCC
CGCCGTTGTCGCCACTGCTCCCATTCGATGCCTTGCCAGCACTCCAGTCA
CGGTAAGCACGATAAACGCCCTGCTAAACCTCCCTATCGCCTATCTTGTC
GCCGTCCTCTGCCCCGTCTTTCTGTTATCGGGGGGTGTGAGACCAGGGGC
ATGAATCGAACGCGTGACTGGTCGTTGGACAAGCCCGCTTAACCCTCTCA
TCCCTCCCTCCTCCCCTCCTTCCTTCCCGCCGATTTCCCATCCTGCTTTC
CCCCCTTCCTAGGAAACGGACGAATACATCATCTTCCCTCGCGAGGCTCC
CGGCCTGGACTACAAGCTAAACTGGTCGTTGAACGGCGACGATGTCACAC
CGGCCGGCAATGCCTACCGTAATTTAGACGCATCTCAATTGAAGGGGAAG
AAGGCAGGAAAGGAGGGAGGGAAGGAGGTCAAGCTGCTCGAGGCAGGGGA
TACGGTGCCTTTCGAGACGTTTGATGCACATTTGGCGGATGTGAAGGCGA
CGTTGGTAAGGAAAAATATTGGAAATTTAGGGAGAGAGAGGGAGAGAGGG
GAAGGAGGATGGGAAGAAAGCAAGCTGAGTGTGATTGCAACATGCACGCA
TAATACCTTAACCCTCTCCTTTCCTCCTGCCTTCCTCCCTTCCTTCCTCC
CTCCTTTGCTTGCAGGAAAAAGCCACCGATTTGTATGTAGAAGATGGCTC
CAGCAAAGGCGGTGCTTTTAACGTGCGTGTCATAGCCGACAGCCCCGCCT
ACGCCCTGGCTGCAAAGGCTTTGTTGGAACAAGCACAAACCAGAAGTAGC
TCCTGGCCATTCACCAAGAGTGTGGTTGTGTATGCTGCGGGGGGCGCCAA
GGCGTTTGCTGGCGTGATGTTTTCGGGGGGGAAGGCAGGGGAGGTGACTG
GTAAGGGGGGAGATCGGCGAGGGAGGGAGGGAGGAAGGGAGGGGGTGTTA
ATGCAGATGTGGGAGAGGAATTCAGCGATTAGCCCAGCGTTTGCGCAACA
ATTTATGTGTTGAAAATACAGAATTTCTCAACGCATCCACCCTCTCTTCA
CAACTTGCGACAGGTGCGACGGTGGCGTTGGGTGGCGTCCCGGCCACGGC
AATCAAGAGTGCGATGAGCCTGGTGGCGGAAGCGATGAAGAAGTGAAGGC
CATCACATCACAAAGAACAAGAGGGTGGCCATTTTATAGCAGATTGTTGA
AATAGTGCAGTGATTGTGTGGCTCCGCTAGGGGGAAGGGAGGAGGGAGGG
AAGGATAGAGGAAGGGAGGAGGGAGCTGCAGACTTGTGTATGACTGATGA
TTTACGTGCCCGGTGGCGGACGAAGGACACGATAAAGAAAGAAAAGACGA
AACTCACATGAGGTACTCG

Coding sequence (CDS) from alignment at scaffold_49:120245..121713+

>mRNA_9993 ID=mRNA_9993|Name=jgi.p|Nanoce1779_2|610390|organism=Nannochloropsis oceanica|type=CDS|length=2760bp|location=Sequence derived from alignment at scaffold_49:120245..121713+ (Nannochloropsis oceanica)
ATGCTGGCCCGGGCAGTCCAAGTGGCCGTGAGGTGCCGGGGGGGCGCCGT
GGCAGCCCTTCGAAATGGGAGCATCCCCGCCGTTGTCGCCACTGCTCCCA
TTCGATGCCTTGCCAGCACTCCAGTCACGGAAACGGACGAATACATCATC
TTCCCTCGCGAGGCTCCCGGCCTGGACTACAAGCTAAACTGGTCGTTGAA
CGGCGACGATGTCACACCGGCCGGCAATGCCTACCGTAATTTAGACGCAT
CTCAATTGAAGGGGAAGAAGGCAGGAAAGGAGGGAGGGAAGGAGGTCAAG
CTGCTCGAGGCAGGGGATACGGTGCCTTTCGAGACGTTTGATGCACATTT
GGCGGATGTGAAGGCGACGTTGGAAAAAGCCACCGATTTGTATGTAGAAG
ATGGCTCCAGCAAAGGCGGTGCTTTTAACGTGCGTGTCATAGCCGACAGC
CCCGCCTACGCCCTGGCTGCAAAGGCTTTGTTGGAACAAGCACAAACCAG
AAGTAGCTCCTGGCCATTCACCAAGAGTGTGGTTGTGTATGCTGCGGGGG
GCGCCAAGGCGTTTGCTGGCGTGATGTTTTCGGGGGGGAAGGCAGGGGAG
GTGACTGGTGCGACGGTGGCGTTGGGTGGCGTCCCGGCCACGGCAATCAA
GAGTGCGATGAGCCTGGTGGCGGAAGCGATGAAGAAGTGAATGCTGGCCC
GGGCAGTCCAAGTGGCCGTGAGGTGCCGGGGGGGCGCCGTGGCAGCCCTT
CGAAATGGGAGCATCCCCGCCGTTGTCGCCACTGCTCCCATTCGATGCCT
TGCCAGCACTCCAGTCACGGAAACGGACGAATACATCATCTTCCCTCGCG
AGGCTCCCGGCCTGGACTACAAGCTAAACTGGTCGTTGAACGGCGACGAT
GTCACACCGGCCGGCAATGCCTACCGTAATTTAGACGCATCTCAATTGAA
GGGGAAGAAGGCAGGAAAGGAGGGAGGGAAGGAGGTCAAGCTGCTCGAGG
CAGGGGATACGGTGCCTTTCGAGACGTTTGATGCACATTTGGCGGATGTG
AAGGCGACGTTGGAAAAAGCCACCGATTTGTATGTAGAAGATGGCTCCAG
CAAAGGCGGTGCTTTTAACGTGCGTGTCATAGCCGACAGCCCCGCCTACG
CCCTGGCTGCAAAGGCTTTGTTGGAACAAGCACAAACCAGAAGTAGCTCC
TGGCCATTCACCAAGAGTGTGGTTGTGTATGCTGCGGGGGGCGCCAAGGC
GTTTGCTGGCGTGATGTTTTCGGGGGGGAAGGCAGGGGAGGTGACTGGTG
CGACGGTGGCGTTGGGTGGCGTCCCGGCCACGGCAATCAAGAGTGCGATG
AGCCTGGTGGCGGAAGCGATGAAGAAGTGAATGCTGGCCCGGGCAGTCCA
AGTGGCCGTGAGGTGCCGGGGGGGCGCCGTGGCAGCCCTTCGAAATGGGA
GCATCCCCGCCGTTGTCGCCACTGCTCCCATTCGATGCCTTGCCAGCACT
CCAGTCACGGAAACGGACGAATACATCATCTTCCCTCGCGAGGCTCCCGG
CCTGGACTACAAGCTAAACTGGTCGTTGAACGGCGACGATGTCACACCGG
CCGGCAATGCCTACCGTAATTTAGACGCATCTCAATTGAAGGGGAAGAAG
GCAGGAAAGGAGGGAGGGAAGGAGGTCAAGCTGCTCGAGGCAGGGGATAC
GGTGCCTTTCGAGACGTTTGATGCACATTTGGCGGATGTGAAGGCGACGT
TGGAAAAAGCCACCGATTTGTATGTAGAAGATGGCTCCAGCAAAGGCGGT
GCTTTTAACGTGCGTGTCATAGCCGACAGCCCCGCCTACGCCCTGGCTGC
AAAGGCTTTGTTGGAACAAGCACAAACCAGAAGTAGCTCCTGGCCATTCA
CCAAGAGTGTGGTTGTGTATGCTGCGGGGGGCGCCAAGGCGTTTGCTGGC
GTGATGTTTTCGGGGGGGAAGGCAGGGGAGGTGACTGGTGCGACGGTGGC
GTTGGGTGGCGTCCCGGCCACGGCAATCAAGAGTGCGATGAGCCTGGTGG
CGGAAGCGATGAAGAAGTGAATGCTGGCCCGGGCAGTCCAAGTGGCCGTG
AGGTGCCGGGGGGGCGCCGTGGCAGCCCTTCGAAATGGGAGCATCCCCGC
CGTTGTCGCCACTGCTCCCATTCGATGCCTTGCCAGCACTCCAGTCACGG
AAACGGACGAATACATCATCTTCCCTCGCGAGGCTCCCGGCCTGGACTAC
AAGCTAAACTGGTCGTTGAACGGCGACGATGTCACACCGGCCGGCAATGC
CTACCGTAATTTAGACGCATCTCAATTGAAGGGGAAGAAGGCAGGAAAGG
AGGGAGGGAAGGAGGTCAAGCTGCTCGAGGCAGGGGATACGGTGCCTTTC
GAGACGTTTGATGCACATTTGGCGGATGTGAAGGCGACGTTGGAAAAAGC
CACCGATTTGTATGTAGAAGATGGCTCCAGCAAAGGCGGTGCTTTTAACG
TGCGTGTCATAGCCGACAGCCCCGCCTACGCCCTGGCTGCAAAGGCTTTG
TTGGAACAAGCACAAACCAGAAGTAGCTCCTGGCCATTCACCAAGAGTGT
GGTTGTGTATGCTGCGGGGGGCGCCAAGGCGTTTGCTGGCGTGATGTTTT
CGGGGGGGAAGGCAGGGGAGGTGACTGGTGCGACGGTGGCGTTGGGTGGC
GTCCCGGCCACGGCAATCAAGAGTGCGATGAGCCTGGTGGCGGAAGCGAT
GAAGAAGTGA

Synonyms

Publications