jgi.p|Nanoce1779_2|610382, mRNA_9992 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|610382
Unique NamemRNA_9992
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length758
Alignment locationscaffold_49:117971..119889 -

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Properties
Property NameValue
TranscriptId610468
TrackFilteredModels2
ProteinId610382
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:117971..119889 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610382gene_9992Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610382mRNA_9992-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9992CDS_9992Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9992 ID=mRNA_9992|Name=jgi.p|Nanoce1779_2|610382|organism=Nannochloropsis oceanica|type=mRNA|length=758bp
AGACTCGCGGCCAAGATTTTCATTCGCGAGCTAGGTAGACGACGCACGGG
CAAGAGTTATGAGTGCAGGCGGCATCGATGACGCCCTCAAGAAGTACAAG
GCCCTGGAGGCCGAGACGCAGGAGCTCATGGCCCGGAGGCAACTAGCAAT
GCAGCAAGCAAATGAGAATGGCATGGTGCAGCAGGAGTTAGAGGCCTTGG
AAAGCGGCGACAACGTCTTTAAAATGATGGGGCCCGTGCTGTTACGTGTG
GAGGTGGAGGACGCCAAGCAAAATGTGGAAAAGCGGTTGGAATTGATCAA
GGGCTCGATGGAGGACTTTGACGGAAAGATTCAGGCCAAGCAAAAGGAGG
CTGAGGAGCTCGGCAGCAAGATCATGGGCATGCAACAAGAATTACAAGCC
AAGACAGCCGATGCCGCCCGGGCTGCAGCCGCGGGTGCCTTGAAAGGGGT
CATGGGTTAAAGGAATACAATGCATGCGTGTGTGTTTGCATGTGTGGGTG
TACAAAGAACCAAAACGCCATTTATTACATTTTTGGATGCGCGAAGACAC
GTCATTTCAACTGTATGGCAGGCGTTTCTTTACCTGCCTTTTCCTTTACC
TGGAACCTGTCCTTGTTGAGTCCTACCCGCGATTAACATTTCTTCCATCC
TATGGGGAGTTAAGTGCCTGAGTACCTCTCTATGATGGGGGTGGGGGCGT
TCCGTTTTGACTGTGTGCGTGCTACATATGCCGAAAATATTTGAGTATCC
GATTTTCA
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protein sequence of jgi.p|Nanoce1779_2|610382

>mRNA_9992-protein ID=mRNA_9992-protein|Name=jgi.p|Nanoce1779_2|610382|organism=Nannochloropsis oceanica|type=polypeptide|length=134bp
MSAGGIDDALKKYKALEAETQELMARRQLAMQQANENGMVQQELEALESG
DNVFKMMGPVLLRVEVEDAKQNVEKRLELIKGSMEDFDGKIQAKQKEAEE
LGSKIMGMQQELQAKTADAARAAAAGALKGVMG*
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mRNA from alignment at scaffold_49:117971..119889-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9992 ID=mRNA_9992|Name=jgi.p|Nanoce1779_2|610382|organism=Nannochloropsis oceanica|type=mRNA|length=1919bp|location=Sequence derived from alignment at scaffold_49:117971..119889- (Nannochloropsis oceanica)
AGACTCGCGGCCAAGATTTTCATTCGCGAGCTAGGTAGACGACGCACGGG
CAAGAGTTATGAGTGCAGGCGGCATCGATGACGCCCTCAAGAAGTACAAG
GCCCTGGAGGCCGAGACGCAGGAGCTCATGGCCCGGAGGCAACTAGCAAT
GCAGCAAGCAAATGAGAATGGCATGGTGCAGCAGGTAGGGGAGTGGGGAG
AGGATGAAGGGTGGGAGGATGAAGAGGAAGGAGAATGACGAGGTATCTGA
TCATCGGACAAGATGCACGACTTTCGTTTTGGAGGTCGCTGCAAGCGATG
GAGAGGGGAGGACTGGAGGGAGAGACGGGAGGACGTATGGGAAGGAAATA
AGGGACAACGGTCTTCGATCGAGCCGTGTTTCGACTCCAAGATGTAGCGC
TGTGAGGCGGCTTGGCTTAGCAGACATATACATGGCGAGCGGGAGAGGCG
AAGGGAGATGATAGAAGCACTAGTTGGGCAGGCCGAGAAGAAAAGGACGG
GCAATTGTGTTTCTTTTGCCGCATGGATTCAACCGTGTCGAACTTACAAG
TTTCTCCACCAGTGATGGTGCTAAATGGAAATACGGATACACCTCGACAC
TGGTGTATCTGTGGCTTGGATGGCTGAAGTCGTTGCCGCCATGGGCAGGT
CTTATGACCGTCTGTTGGCCAGCCCTATAATTCCTTAATCCACTCCCTCT
CTGAGATGACTGAAGGGGGTAATAGAGATGAGAAGAACGATAACGAATCC
AAGCACAATTTTTAAAAGGGGAAGGATGATAAGAATGGAAGCACGTGGAA
TATCAGTCAAGCCATCACCTACAATTCCGATTGTCCCTTCATCGTCCACT
CCTCCACTTACACTTATGCCCAGAAAATCACCCACGCACAATTTGTCTGA
AATTCTATTCAACCCTCCTTAACCTCTTCGTACTGTTATTCTCACCGCCA
CCCAACCGCCCACAACATGAAAAATACAGGAGTTAGAGGCCTTGGAAAGC
GGCGACAACGTCTTTAAAATGATGGGGCCCGTGCTGTTACGTGTGGAGGT
GGAGGACGCCAAGCAAAATGTGGAAAAGCGGTTGGAATTGATCAAGGGCT
CGATGTTAGTTGAAGGGGGAAAGAGGGAGAGAAGGAACGAGGGATGGTGC
AATGGGGGCAACGCAGTAGTCTACAAATGATCTCGTTTCTCATTTTTTCT
CTTGTATCATTCAGGGAGGACTTTGACGGAAAGATTCAGGCCAAGCAAAA
GGAGGCTGAGGAGCTCGGCAGCAAGGTAAGCTAATCTTGTATAAAACTGT
GAAACTACACGTGTACGTGTGCAGAGTAGTGTGCGTGCATCTGCTTTCGA
CCAAGAGTTGTGCCCTGCTATCAGTCAATCTGGCTTCCGCGCATTTCGTT
TTGTCTTGGACTGGATAAAGGAGGCTACCAGCGATTCACTCTCCACTGTC
GTAGATGTTCTCATAATCTCACAATGCCACCCTCCTTTCCTCCCTCCTTC
CTTTCCTCCCTCCTCCTCTCTCCCTTCCTAGATCATGGGCATGCAACAAG
AATTACAAGCCAAGACAGCCGATGCCGCCCGGGCTGCAGCCGCGGGTGCC
TTGAAAGGGGTCATGGGTTAAAGGAATACAATGCATGCGTGTGTGTTTGC
ATGTGTGGGTGTACAAAGAACCAAAACGCCATTTATTACATTTTTGGATG
CGCGAAGACACGTCATTTCAACTGTATGGCAGGCGTTTCTTTACCTGCCT
TTTCCTTTACCTGGAACCTGTCCTTGTTGAGTCCTACCCGCGATTAACAT
TTCTTCCATCCTATGGGGAGTTAAGTGCCTGAGTACCTCTCTATGATGGG
GGTGGGGGCGTTCCGTTTTGACTGTGTGCGTGCTACATATGCCGAAAATA
TTTGAGTATCCGATTTTCA
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Coding sequence (CDS) from alignment at scaffold_49:117971..119889-

>mRNA_9992 ID=mRNA_9992|Name=jgi.p|Nanoce1779_2|610382|organism=Nannochloropsis oceanica|type=CDS|length=1608bp|location=Sequence derived from alignment at scaffold_49:117971..119889- (Nannochloropsis oceanica)
ATCATGGGCATGCAACAAGAATTACAAGCCAAGACAGCCGATGCCGCCCG
GGCTGCAGCCGCGGGTGCCTTGAAAGGGGTCATGGGTTAAGGAGGACTTT
GACGGAAAGATTCAGGCCAAGCAAAAGGAGGCTGAGGAGCTCGGCAGCAA
GGAGTTAGAGGCCTTGGAAAGCGGCGACAACGTCTTTAAAATGATGGGGC
CCGTGCTGTTACGTGTGGAGGTGGAGGACGCCAAGCAAAATGTGGAAAAG
CGGTTGGAATTGATCAAGGGCTCGATATGAGTGCAGGCGGCATCGATGAC
GCCCTCAAGAAGTACAAGGCCCTGGAGGCCGAGACGCAGGAGCTCATGGC
CCGGAGGCAACTAGCAATGCAGCAAGCAAATGAGAATGGCATGGTGCAGC
AGATCATGGGCATGCAACAAGAATTACAAGCCAAGACAGCCGATGCCGCC
CGGGCTGCAGCCGCGGGTGCCTTGAAAGGGGTCATGGGTTAAGGAGGACT
TTGACGGAAAGATTCAGGCCAAGCAAAAGGAGGCTGAGGAGCTCGGCAGC
AAGGAGTTAGAGGCCTTGGAAAGCGGCGACAACGTCTTTAAAATGATGGG
GCCCGTGCTGTTACGTGTGGAGGTGGAGGACGCCAAGCAAAATGTGGAAA
AGCGGTTGGAATTGATCAAGGGCTCGATATGAGTGCAGGCGGCATCGATG
ACGCCCTCAAGAAGTACAAGGCCCTGGAGGCCGAGACGCAGGAGCTCATG
GCCCGGAGGCAACTAGCAATGCAGCAAGCAAATGAGAATGGCATGGTGCA
GCAGATCATGGGCATGCAACAAGAATTACAAGCCAAGACAGCCGATGCCG
CCCGGGCTGCAGCCGCGGGTGCCTTGAAAGGGGTCATGGGTTAAGGAGGA
CTTTGACGGAAAGATTCAGGCCAAGCAAAAGGAGGCTGAGGAGCTCGGCA
GCAAGGAGTTAGAGGCCTTGGAAAGCGGCGACAACGTCTTTAAAATGATG
GGGCCCGTGCTGTTACGTGTGGAGGTGGAGGACGCCAAGCAAAATGTGGA
AAAGCGGTTGGAATTGATCAAGGGCTCGATATGAGTGCAGGCGGCATCGA
TGACGCCCTCAAGAAGTACAAGGCCCTGGAGGCCGAGACGCAGGAGCTCA
TGGCCCGGAGGCAACTAGCAATGCAGCAAGCAAATGAGAATGGCATGGTG
CAGCAGATCATGGGCATGCAACAAGAATTACAAGCCAAGACAGCCGATGC
CGCCCGGGCTGCAGCCGCGGGTGCCTTGAAAGGGGTCATGGGTTAAGGAG
GACTTTGACGGAAAGATTCAGGCCAAGCAAAAGGAGGCTGAGGAGCTCGG
CAGCAAGGAGTTAGAGGCCTTGGAAAGCGGCGACAACGTCTTTAAAATGA
TGGGGCCCGTGCTGTTACGTGTGGAGGTGGAGGACGCCAAGCAAAATGTG
GAAAAGCGGTTGGAATTGATCAAGGGCTCGATATGAGTGCAGGCGGCATC
GATGACGCCCTCAAGAAGTACAAGGCCCTGGAGGCCGAGACGCAGGAGCT
CATGGCCCGGAGGCAACTAGCAATGCAGCAAGCAAATGAGAATGGCATGG
TGCAGCAG
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Synonyms
Publications