jgi.p|Nanoce1779_2|610367, mRNA_9988 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|610367
Unique Name	mRNA_9988
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1667
Alignment location	scaffold_49:106190..107856 -

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Properties


Property Name	Value
TranscriptId	610453
Track	FilteredModels2
ProteinId	610367

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_49	supercontig	scaffold_49:106190..107856 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|610367	gene_9988	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|610367	mRNA_9988-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9988	CDS_9988	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_49:106190..107856-
coding sequence from alignment at scaffold_49:106190..107856-

mRNA sequence

>mRNA_9988 ID=mRNA_9988|Name=jgi.p|Nanoce1779_2|610367|organism=Nannochloropsis oceanica|type=mRNA|length=1667bp
TGACAGAGGCGGAGGCAGGGCTATTTGAAGGAGCGAGGGAGGGGGGGAGG
GGGGGAGGGATCCCAGCGTTCTTGAAGAAGAGGAAGGAGCTGAGGCATGG
TGTGAGGAACGAGGAGGGCGAGTCGATGACTGCGCGACGGGGAGGGAGTG
ATGGAGCGGTAAGGAGTGGATTGCGAGCAGCAGTAGTCACTGCGGTGCGG
CGGGTGCTGTCGTCTACATCATTTTCGTCCATGGAAAAGTGGTGATGCTG
TTTGTGATGATAAGTTTTGAAAATGGAAAAAAAGTGTGAGTACATAAGCG
GTAGGAGAGACTAGCTCTCACGGCGACGACACTTTAGATAAGAATGCGAT
CCCAACGACAGAACTGCATTGTAATTTGTGTATAAGTTTAAAGTAGGGCA
GCCTCCAGGCCAGGGATTCCTTACTCACCTGCCCCTAGATTAAAAAGCAA
GTGTTTTGTAAGAGAAAGAACAAAAAATGAAACCTCCCCCTTATCTCGAG
CAAAATCAAGTACCCCTTTTGTTGCCATTCCCTCATTTTAATGACCCTCA
AGCGCATCTGATTGCTCCTAACTTATCATCCGAGGTATCTGTGGTGAGTT
TGTGGCCTAGTAGCACATATCAAGGGATGTAGAAGCACGGCAAACCTCTA
CTTTGGTCCGACCTCCTTTGCCGTGGATCAAAACGACTCACACGCTCACC
ACACCAGACACACACATCAAACACTCAGTCTCGTTCATAGGCCAGGAGCA
CGTATGGCAAGGCCCGCTGCTATCTCCACCGCAGCAGCTGGATCCACCTC
CACCTCTACCTCCTCTTCCGCCTCCTCCTCGACAGGCAACAATCCATCGA
GCAGCAATAGCACTGCCACTCCCACAATTCACCAAGTCTTCGACCGCCGC
CTGAATTTCAGTAACATATCTACCGATGCCTCCCTTTACTCCATGCTTCG
GGCGTGGGTGCAAGACGACCCGCTGCGGCAACCGCCATGGTATTTTCACG
TCAAGCAGGAAGGGAGGGAGGGAGGAAGGGCCCTCCATTCGTCGCCCCCT
TCATCTCTATACTTTTCGTCTTCGATGGTAGAAGGAGGACAAGAAATAGG
GGAAATAGGAGGGTTCTTCCTTCCACCCCCCTTGCCAGAGACGGCCATGA
CGCTGCTGAAAGGGTCTGTCGCTCCTGCTGCTCCTCTTTCTCCCTCTTCT
TCTCCTGCACCTCTCGCTGCTGGCATTGCTGCCAAAGGTACCACCATTTC
TACAAGCAGCAGGACGATGAACAGAGACCGTAAGTCGGCACCAGCACCAG
CAGCAGCGGCACCACCACCGCTACCAGCACCAGCACCAACATCAGCAGGC
TTGGCTATTAATGGGTTGCAGCACGTTCCAACGGAAATCCTTCTGGATCT
TCACGTGGGCTTCTTCCGGCAGGTCAGAAAAGGTTTGGTCAAAGTGAGAG
AGAGGAGGGTGGGGAGGTTTCGGCATCGGTTGGCGTTGTTGGGGTTGGTG
GGAGGGAAAAGAAAGAGGACGAGAAGGAGGGAGGGAACGATGGTGGATGA
GCGGATACAGGAGTAGGGGGAAAAGAGAGAAAGTGAGGGGATAGGAGGGA
GGGAGGAAGGAGGTGATGGGGAAAGGGGCGAGTGATACCCCGAGGGGGGG
AACCTCGGGAATGAGAG

protein sequence of jgi.p|Nanoce1779_2|610367

>mRNA_9988-protein ID=mRNA_9988-protein|Name=jgi.p|Nanoce1779_2|610367|organism=Nannochloropsis oceanica|type=polypeptide|length=271bp
MARPAAISTAAAGSTSTSTSSSASSSTGNNPSSSNSTATPTIHQVFDRRL
NFSNISTDASLYSMLRAWVQDDPLRQPPWYFHVKQEGREGGRALHSSPPS
SLYFSSSMVEGGQEIGEIGGFFLPPPLPETAMTLLKGSVAPAAPLSPSSS
PAPLAAGIAAKGTTISTSSRTMNRDRKSAPAPAAAAPPPLPAPAPTSAGL
AINGLQHVPTEILLDLHVGFFRQVRKGLVKVRERRVGRFRHRLALLGLVG
GKRKRTRRREGTMVDERIQE*

mRNA from alignment at scaffold_49:106190..107856-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9988 ID=mRNA_9988|Name=jgi.p|Nanoce1779_2|610367|organism=Nannochloropsis oceanica|type=mRNA|length=1667bp|location=Sequence derived from alignment at scaffold_49:106190..107856- (Nannochloropsis oceanica)
TGACAGAGGCGGAGGCAGGGCTATTTGAAGGAGCGAGGGAGGGGGGGAGG
GGGGGAGGGATCCCAGCGTTCTTGAAGAAGAGGAAGGAGCTGAGGCATGG
TGTGAGGAACGAGGAGGGCGAGTCGATGACTGCGCGACGGGGAGGGAGTG
ATGGAGCGGTAAGGAGTGGATTGCGAGCAGCAGTAGTCACTGCGGTGCGG
CGGGTGCTGTCGTCTACATCATTTTCGTCCATGGAAAAGTGGTGATGCTG
TTTGTGATGATAAGTTTTGAAAATGGAAAAAAAGTGTGAGTACATAAGCG
GTAGGAGAGACTAGCTCTCACGGCGACGACACTTTAGATAAGAATGCGAT
CCCAACGACAGAACTGCATTGTAATTTGTGTATAAGTTTAAAGTAGGGCA
GCCTCCAGGCCAGGGATTCCTTACTCACCTGCCCCTAGATTAAAAAGCAA
GTGTTTTGTAAGAGAAAGAACAAAAAATGAAACCTCCCCCTTATCTCGAG
CAAAATCAAGTACCCCTTTTGTTGCCATTCCCTCATTTTAATGACCCTCA
AGCGCATCTGATTGCTCCTAACTTATCATCCGAGGTATCTGTGGTGAGTT
TGTGGCCTAGTAGCACATATCAAGGGATGTAGAAGCACGGCAAACCTCTA
CTTTGGTCCGACCTCCTTTGCCGTGGATCAAAACGACTCACACGCTCACC
ACACCAGACACACACATCAAACACTCAGTCTCGTTCATAGGCCAGGAGCA
CGTATGGCAAGGCCCGCTGCTATCTCCACCGCAGCAGCTGGATCCACCTC
CACCTCTACCTCCTCTTCCGCCTCCTCCTCGACAGGCAACAATCCATCGA
GCAGCAATAGCACTGCCACTCCCACAATTCACCAAGTCTTCGACCGCCGC
CTGAATTTCAGTAACATATCTACCGATGCCTCCCTTTACTCCATGCTTCG
GGCGTGGGTGCAAGACGACCCGCTGCGGCAACCGCCATGGTATTTTCACG
TCAAGCAGGAAGGGAGGGAGGGAGGAAGGGCCCTCCATTCGTCGCCCCCT
TCATCTCTATACTTTTCGTCTTCGATGGTAGAAGGAGGACAAGAAATAGG
GGAAATAGGAGGGTTCTTCCTTCCACCCCCCTTGCCAGAGACGGCCATGA
CGCTGCTGAAAGGGTCTGTCGCTCCTGCTGCTCCTCTTTCTCCCTCTTCT
TCTCCTGCACCTCTCGCTGCTGGCATTGCTGCCAAAGGTACCACCATTTC
TACAAGCAGCAGGACGATGAACAGAGACCGTAAGTCGGCACCAGCACCAG
CAGCAGCGGCACCACCACCGCTACCAGCACCAGCACCAACATCAGCAGGC
TTGGCTATTAATGGGTTGCAGCACGTTCCAACGGAAATCCTTCTGGATCT
TCACGTGGGCTTCTTCCGGCAGGTCAGAAAAGGTTTGGTCAAAGTGAGAG
AGAGGAGGGTGGGGAGGTTTCGGCATCGGTTGGCGTTGTTGGGGTTGGTG
GGAGGGAAAAGAAAGAGGACGAGAAGGAGGGAGGGAACGATGGTGGATGA
GCGGATACAGGAGTAGGGGGAAAAGAGAGAAAGTGAGGGGATAGGAGGGA
GGGAGGAAGGAGGTGATGGGGAAAGGGGCGAGTGATACCCCGAGGGGGGG
AACCTCGGGAATGAGAG

Coding sequence (CDS) from alignment at scaffold_49:106190..107856-

>mRNA_9988 ID=mRNA_9988|Name=jgi.p|Nanoce1779_2|610367|organism=Nannochloropsis oceanica|type=CDS|length=813bp|location=Sequence derived from alignment at scaffold_49:106190..107856- (Nannochloropsis oceanica)
ATGGCAAGGCCCGCTGCTATCTCCACCGCAGCAGCTGGATCCACCTCCAC
CTCTACCTCCTCTTCCGCCTCCTCCTCGACAGGCAACAATCCATCGAGCA
GCAATAGCACTGCCACTCCCACAATTCACCAAGTCTTCGACCGCCGCCTG
AATTTCAGTAACATATCTACCGATGCCTCCCTTTACTCCATGCTTCGGGC
GTGGGTGCAAGACGACCCGCTGCGGCAACCGCCATGGTATTTTCACGTCA
AGCAGGAAGGGAGGGAGGGAGGAAGGGCCCTCCATTCGTCGCCCCCTTCA
TCTCTATACTTTTCGTCTTCGATGGTAGAAGGAGGACAAGAAATAGGGGA
AATAGGAGGGTTCTTCCTTCCACCCCCCTTGCCAGAGACGGCCATGACGC
TGCTGAAAGGGTCTGTCGCTCCTGCTGCTCCTCTTTCTCCCTCTTCTTCT
CCTGCACCTCTCGCTGCTGGCATTGCTGCCAAAGGTACCACCATTTCTAC
AAGCAGCAGGACGATGAACAGAGACCGTAAGTCGGCACCAGCACCAGCAG
CAGCGGCACCACCACCGCTACCAGCACCAGCACCAACATCAGCAGGCTTG
GCTATTAATGGGTTGCAGCACGTTCCAACGGAAATCCTTCTGGATCTTCA
CGTGGGCTTCTTCCGGCAGGTCAGAAAAGGTTTGGTCAAAGTGAGAGAGA
GGAGGGTGGGGAGGTTTCGGCATCGGTTGGCGTTGTTGGGGTTGGTGGGA
GGGAAAAGAAAGAGGACGAGAAGGAGGGAGGGAACGATGGTGGATGAGCG
GATACAGGAGTAG

Synonyms

Publications