jgi.p|Nanoce1779_2|633962, mRNA_9986 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|633962
Unique NamemRNA_9986
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length951
Alignment locationscaffold_49:100756..101706 +

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Properties
Property NameValue
TranscriptId634048
TrackFilteredModels2
ProteinId633962
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:100756..101706 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|633962gene_9986Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|633962mRNA_9986-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9986CDS_9986Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9986 ID=mRNA_9986|Name=jgi.p|Nanoce1779_2|633962|organism=Nannochloropsis oceanica|type=mRNA|length=951bp
GGTGGACGTGTCTGGAAGGCTTCCCTCTTTCTAAAAAGATGTCTTGAGCA
GGAGAAAATCACACCAAGCCTGGGCGGGCTGGCGGTACTGGACGTCGGCG
CGGGGATTGGAGCATTGGGTCTAGCTTGTGCGCTCGCGCGCCCTGTGCCT
CCAGCCTTTGTGGCTTTGACAGATAAGCAATGCTTGATGCCTTTACTGTA
TCGAAATGTGGAAGTTGCCCGGCTAGTAGCGGATGGTGCTTCTCCTGATG
ATGCTGTTGCTATTGCTGCCGCTGCTGCGGCTGGTAAAATCAGTGGTGCT
GCAGTGTTGGCGCCGCCGGTTGAGATTACCGCGATGGGTAAGGCCGTTGT
GGGAGGAGGGGGAGGAATAGATACGTATATAAAAATAAAAAATGAGGAGA
GACAAGTACCAAGAGACGAAAAAGGGCAGGAAAAAGGGGAAAAGGGTGGA
GGGCAAAGAGGTGCCTGTCGAGTAGTCGCCTCTCCCTTAGACTGGTTAGA
GCATGGCAATGGCCCCCAAAGCAAGGCTCTGCTTCACCTTCTCCACGCTG
AGACAGGAAAGAGGCATTTTGATTTGATATTGGTAGCGGATTGTGTGTAT
TACCCGCAATTGTATAGGCCATTGGTCGAGGCGTTGGCGGGAATGGCAGG
TGAGGAAACGAAGGTGGCGATCGTGAATGATGACGGAAGGACGGATGCCG
CTGGGGTGGAAAAAACCACAGGGAGGAGGTGGGATGAAGAGTTTTTTGAT
TTACTGAAAGAGAAATTTATGTGGGGGAAGGAGGAGGGAGGGAAGGAGGG
GAAGGGAGAGGATAGGCTGTATCCCGAGGCGAAGAAAGAGGAGGGGGGAG
GGGGGCCGTTTCGAGTGGTGGTTGCGAAGAGGAGGAGAGTGGAGGAGGAA
AAGGAGGAAGAAAGGAGAGGAATGAGGGGGAAAGGAGAAAGACGTGAGTG
A
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protein sequence of jgi.p|Nanoce1779_2|633962

>mRNA_9986-protein ID=mRNA_9986-protein|Name=jgi.p|Nanoce1779_2|633962|organism=Nannochloropsis oceanica|type=polypeptide|length=255bp
MPLLYRNVEVARLVADGASPDDAVAIAAAAAAGKISGAAVLAPPVEITAM
GKAVVGGGGGIDTYIKIKNEERQVPRDEKGQEKGEKGGGQRGACRVVASP
LDWLEHGNGPQSKALLHLLHAETGKRHFDLILVADCVYYPQLYRPLVEAL
AGMAGEETKVAIVNDDGRTDAAGVEKTTGRRWDEEFFDLLKEKFMWGKEE
GGKEGKGEDRLYPEAKKEEGGGGPFRVVVAKRRRVEEEKEEERRGMRGKG
ERRE*
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mRNA from alignment at scaffold_49:100756..101706+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9986 ID=mRNA_9986|Name=jgi.p|Nanoce1779_2|633962|organism=Nannochloropsis oceanica|type=mRNA|length=951bp|location=Sequence derived from alignment at scaffold_49:100756..101706+ (Nannochloropsis oceanica)
GGTGGACGTGTCTGGAAGGCTTCCCTCTTTCTAAAAAGATGTCTTGAGCA
GGAGAAAATCACACCAAGCCTGGGCGGGCTGGCGGTACTGGACGTCGGCG
CGGGGATTGGAGCATTGGGTCTAGCTTGTGCGCTCGCGCGCCCTGTGCCT
CCAGCCTTTGTGGCTTTGACAGATAAGCAATGCTTGATGCCTTTACTGTA
TCGAAATGTGGAAGTTGCCCGGCTAGTAGCGGATGGTGCTTCTCCTGATG
ATGCTGTTGCTATTGCTGCCGCTGCTGCGGCTGGTAAAATCAGTGGTGCT
GCAGTGTTGGCGCCGCCGGTTGAGATTACCGCGATGGGTAAGGCCGTTGT
GGGAGGAGGGGGAGGAATAGATACGTATATAAAAATAAAAAATGAGGAGA
GACAAGTACCAAGAGACGAAAAAGGGCAGGAAAAAGGGGAAAAGGGTGGA
GGGCAAAGAGGTGCCTGTCGAGTAGTCGCCTCTCCCTTAGACTGGTTAGA
GCATGGCAATGGCCCCCAAAGCAAGGCTCTGCTTCACCTTCTCCACGCTG
AGACAGGAAAGAGGCATTTTGATTTGATATTGGTAGCGGATTGTGTGTAT
TACCCGCAATTGTATAGGCCATTGGTCGAGGCGTTGGCGGGAATGGCAGG
TGAGGAAACGAAGGTGGCGATCGTGAATGATGACGGAAGGACGGATGCCG
CTGGGGTGGAAAAAACCACAGGGAGGAGGTGGGATGAAGAGTTTTTTGAT
TTACTGAAAGAGAAATTTATGTGGGGGAAGGAGGAGGGAGGGAAGGAGGG
GAAGGGAGAGGATAGGCTGTATCCCGAGGCGAAGAAAGAGGAGGGGGGAG
GGGGGCCGTTTCGAGTGGTGGTTGCGAAGAGGAGGAGAGTGGAGGAGGAA
AAGGAGGAAGAAAGGAGAGGAATGAGGGGGAAAGGAGAAAGACGTGAGTG
A
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Coding sequence (CDS) from alignment at scaffold_49:100756..101706+

>mRNA_9986 ID=mRNA_9986|Name=jgi.p|Nanoce1779_2|633962|organism=Nannochloropsis oceanica|type=CDS|length=765bp|location=Sequence derived from alignment at scaffold_49:100756..101706+ (Nannochloropsis oceanica)
ATGCCTTTACTGTATCGAAATGTGGAAGTTGCCCGGCTAGTAGCGGATGG
TGCTTCTCCTGATGATGCTGTTGCTATTGCTGCCGCTGCTGCGGCTGGTA
AAATCAGTGGTGCTGCAGTGTTGGCGCCGCCGGTTGAGATTACCGCGATG
GGTAAGGCCGTTGTGGGAGGAGGGGGAGGAATAGATACGTATATAAAAAT
AAAAAATGAGGAGAGACAAGTACCAAGAGACGAAAAAGGGCAGGAAAAAG
GGGAAAAGGGTGGAGGGCAAAGAGGTGCCTGTCGAGTAGTCGCCTCTCCC
TTAGACTGGTTAGAGCATGGCAATGGCCCCCAAAGCAAGGCTCTGCTTCA
CCTTCTCCACGCTGAGACAGGAAAGAGGCATTTTGATTTGATATTGGTAG
CGGATTGTGTGTATTACCCGCAATTGTATAGGCCATTGGTCGAGGCGTTG
GCGGGAATGGCAGGTGAGGAAACGAAGGTGGCGATCGTGAATGATGACGG
AAGGACGGATGCCGCTGGGGTGGAAAAAACCACAGGGAGGAGGTGGGATG
AAGAGTTTTTTGATTTACTGAAAGAGAAATTTATGTGGGGGAAGGAGGAG
GGAGGGAAGGAGGGGAAGGGAGAGGATAGGCTGTATCCCGAGGCGAAGAA
AGAGGAGGGGGGAGGGGGGCCGTTTCGAGTGGTGGTTGCGAAGAGGAGGA
GAGTGGAGGAGGAAAAGGAGGAAGAAAGGAGAGGAATGAGGGGGAAAGGA
GAAAGACGTGAGTGA
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Synonyms
Publications