jgi.p|Nanoce1779_2|624176, mRNA_9985 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|624176
Unique NamemRNA_9985
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length867
Alignment locationscaffold_49:98708..100005 -

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Properties
Property NameValue
TranscriptId624262
TrackFilteredModels2
ProteinId624176
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:98708..100005 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|624176gene_9985Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|624176mRNA_9985-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9985CDS_9985Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9985 ID=mRNA_9985|Name=jgi.p|Nanoce1779_2|624176|organism=Nannochloropsis oceanica|type=mRNA|length=867bp
ATGGGTTGCAGCATGGTGTCCCATCTGCTCGGCGCAGGGTACCACTGCAC
CATCTACAACCGAAGCCCTTCGAAATGCATTCCCTCGAAAGCTAAGGGCG
CGGTCATTGCTACCTCACCCAAAGCCGTCGCTGAGCAAGCTGACGTCGTC
TTTGTCATCGTTGGCTTTCCCACGGACGTGCGCGAGGTGGTCCTGGGGCA
TGATGGAGTCTTTGCGGGATTAAAGCGAGGGGGGGTCTTAATCGATTGCA
CTACCTCCACTCCGAGCCTGGCGCAAGAGATCTACACACAAGGGCAACAA
AAAGGTGTGGCCACCATTGATGCCCCCGTGTCGGGCGGGGACATAGGCGC
CAAGACAGCGGAATTGTCATTTATGTTGGGGGGGGACAAAGAGGCTGTGG
AGAGGTCACGGCCATTACTTGATCTGATGGGGAAAAATGCCAGGTATATG
GGAGGAGCGGGTAGTGGACAACATACCAAGATGGTGAATCAGATTTTGAT
TGCAAATACTATGATTGGCGTCTGCGAAGGTCTTTTATACGCGCAGAGAG
TGGGGCTGGACCTGACTGATATCATCGCGGCCGTGGGTGCTGGAGCGGCA
GGTAGCTTCAGCATCAATAACCTGGGCCCGCGGATGGTACGTCGTGATTT
CGCCCCAGGTTTCTACGTCGACCATTTTCTCAAGGACTTAGGCATCGCCC
TCGAGGAGGCGCGGAGGATGAACCTCGCCTTACCGGGGCTGGCCCTCGCC
AATCAAATGTACGTAGCGTTGAAGGCGCAGGGAGGAGGGAGACTTGGCAC
GCAGGGACTGCTGCTCGTCCTGGAACGACTGAACGGTCTGCAGCAGAAGG
AGGAGAATGAGGGGTAG
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protein sequence of jgi.p|Nanoce1779_2|624176

>mRNA_9985-protein ID=mRNA_9985-protein|Name=jgi.p|Nanoce1779_2|624176|organism=Nannochloropsis oceanica|type=polypeptide|length=289bp
MGCSMVSHLLGAGYHCTIYNRSPSKCIPSKAKGAVIATSPKAVAEQADVV
FVIVGFPTDVREVVLGHDGVFAGLKRGGVLIDCTTSTPSLAQEIYTQGQQ
KGVATIDAPVSGGDIGAKTAELSFMLGGDKEAVERSRPLLDLMGKNARYM
GGAGSGQHTKMVNQILIANTMIGVCEGLLYAQRVGLDLTDIIAAVGAGAA
GSFSINNLGPRMVRRDFAPGFYVDHFLKDLGIALEEARRMNLALPGLALA
NQMYVALKAQGGGRLGTQGLLLVLERLNGLQQKEENEG*
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mRNA from alignment at scaffold_49:98708..100005-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9985 ID=mRNA_9985|Name=jgi.p|Nanoce1779_2|624176|organism=Nannochloropsis oceanica|type=mRNA|length=1298bp|location=Sequence derived from alignment at scaffold_49:98708..100005- (Nannochloropsis oceanica)
ATGGGTTGCAGCATGGTGTCCCATCTGCTCGGCGCAGGGTACCACTGCAC
CATCTACAACCGAAGCCCTTCGAAATGCATTCCCTCGAAAGCTAAGGGCG
CGGTCATTGCTACCTCACCCAAAGCCGTCGCTGAGCAAGCTGACGTCGTC
TTTGTCATCGTTGGCTTTCCCACGGACGTGCGCGAGGTGGTCCTGGGGCA
TGATGGAGTCTTTGCGGGATTAAAGCGAGGGGGGGTCTTAATCGATTGCA
CTACCTCCACTCCGAGCCTGGCGCAAGAGATCTACACACAAGGGCAACAA
AAAGGTGTGGCCACCATTGATGCCCCCGTGTCGGGCGGGGACATAGGCGC
CAAGACAGCGGAATTGTCATTTATGTTGGGGGGGGACAAAGAGGCTGTGG
AGAGGTCACGGCCATTACTTGATCTGATGGGGAAAAATGCCAGGTATATG
GGAGGAGCGGGTAGTGGACAACATACCAAGATGGTGAATCAGATTTTGAT
TGCAAATACTATGATTGGTACGTCGGGGGGGGGGGAGAGGAAGGGAGGGG
GGAATTGCGTAGATTTGGGAATCTTACTTCTTTTTCACTTTTTCCTTCCA
TCTATCCTTCCCACTCATTTATGCGTAGGCGTCTGCGAAGGTCTTTTATA
CGCGCAGAGAGTGGGGCTGGACCTGACTGATATCATCGCGGCCGTGGGTG
CTGGAGCGGCAGGTAGCTTCAGCATCAATAACCTGGGCCCGCGGATGGTA
CGTCGCGTCGCCGTTGCTCTCGCCGGTGAATTCCCCTCATTCCTCCGAGC
AACCTGAAGTCGAATAGAGCGCGTGTGCGTGATTTCCTCTTCCTGAACGT
TGTTCTTTACTTGTCCTTTGTCACACACTTCCTCGTCCGCTCTCCTCCTC
TCCTCCTCCTCTCTCTCTCCTCTCTCTCCTCATCTCTGCTCCTCCTCTTT
GCTCCTCGTCCTCACTCCTTTCCTAACTCCTTTCCCTTCTGACCCCTTCA
CTCATCCCTTCTCCCCCCTCCTCTCTCCTCTCCCTCCTCCCACCTCTCCT
CCTCGCTCTTCCTCCAGGTACGTCGTGATTTCGCCCCAGGTTTCTACGTC
GACCATTTTCTCAAGGACTTAGGCATCGCCCTCGAGGAGGCGCGGAGGAT
GAACCTCGCCTTACCGGGGCTGGCCCTCGCCAATCAAATGTACGTAGCGT
TGAAGGCGCAGGGAGGAGGGAGACTTGGCACGCAGGGACTGCTGCTCGTC
CTGGAACGACTGAACGGTCTGCAGCAGAAGGAGGAGAATGAGGGGTAG
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Coding sequence (CDS) from alignment at scaffold_49:98708..100005-

>mRNA_9985 ID=mRNA_9985|Name=jgi.p|Nanoce1779_2|624176|organism=Nannochloropsis oceanica|type=CDS|length=2601bp|location=Sequence derived from alignment at scaffold_49:98708..100005- (Nannochloropsis oceanica)
GTACGTCGTGATTTCGCCCCAGGTTTCTACGTCGACCATTTTCTCAAGGA
CTTAGGCATCGCCCTCGAGGAGGCGCGGAGGATGAACCTCGCCTTACCGG
GGCTGGCCCTCGCCAATCAAATGTACGTAGCGTTGAAGGCGCAGGGAGGA
GGGAGACTTGGCACGCAGGGACTGCTGCTCGTCCTGGAACGACTGAACGG
TCTGCAGCAGAAGGAGGAGAATGAGGGGTAGGCGTCTGCGAAGGTCTTTT
ATACGCGCAGAGAGTGGGGCTGGACCTGACTGATATCATCGCGGCCGTGG
GTGCTGGAGCGGCAGGTAGCTTCAGCATCAATAACCTGGGCCCGCGGATG
ATGGGTTGCAGCATGGTGTCCCATCTGCTCGGCGCAGGGTACCACTGCAC
CATCTACAACCGAAGCCCTTCGAAATGCATTCCCTCGAAAGCTAAGGGCG
CGGTCATTGCTACCTCACCCAAAGCCGTCGCTGAGCAAGCTGACGTCGTC
TTTGTCATCGTTGGCTTTCCCACGGACGTGCGCGAGGTGGTCCTGGGGCA
TGATGGAGTCTTTGCGGGATTAAAGCGAGGGGGGGTCTTAATCGATTGCA
CTACCTCCACTCCGAGCCTGGCGCAAGAGATCTACACACAAGGGCAACAA
AAAGGTGTGGCCACCATTGATGCCCCCGTGTCGGGCGGGGACATAGGCGC
CAAGACAGCGGAATTGTCATTTATGTTGGGGGGGGACAAAGAGGCTGTGG
AGAGGTCACGGCCATTACTTGATCTGATGGGGAAAAATGCCAGGTATATG
GGAGGAGCGGGTAGTGGACAACATACCAAGATGGTGAATCAGATTTTGAT
TGCAAATACTATGATTGGTACGTCGTGATTTCGCCCCAGGTTTCTACGTC
GACCATTTTCTCAAGGACTTAGGCATCGCCCTCGAGGAGGCGCGGAGGAT
GAACCTCGCCTTACCGGGGCTGGCCCTCGCCAATCAAATGTACGTAGCGT
TGAAGGCGCAGGGAGGAGGGAGACTTGGCACGCAGGGACTGCTGCTCGTC
CTGGAACGACTGAACGGTCTGCAGCAGAAGGAGGAGAATGAGGGGTAGGC
GTCTGCGAAGGTCTTTTATACGCGCAGAGAGTGGGGCTGGACCTGACTGA
TATCATCGCGGCCGTGGGTGCTGGAGCGGCAGGTAGCTTCAGCATCAATA
ACCTGGGCCCGCGGATGATGGGTTGCAGCATGGTGTCCCATCTGCTCGGC
GCAGGGTACCACTGCACCATCTACAACCGAAGCCCTTCGAAATGCATTCC
CTCGAAAGCTAAGGGCGCGGTCATTGCTACCTCACCCAAAGCCGTCGCTG
AGCAAGCTGACGTCGTCTTTGTCATCGTTGGCTTTCCCACGGACGTGCGC
GAGGTGGTCCTGGGGCATGATGGAGTCTTTGCGGGATTAAAGCGAGGGGG
GGTCTTAATCGATTGCACTACCTCCACTCCGAGCCTGGCGCAAGAGATCT
ACACACAAGGGCAACAAAAAGGTGTGGCCACCATTGATGCCCCCGTGTCG
GGCGGGGACATAGGCGCCAAGACAGCGGAATTGTCATTTATGTTGGGGGG
GGACAAAGAGGCTGTGGAGAGGTCACGGCCATTACTTGATCTGATGGGGA
AAAATGCCAGGTATATGGGAGGAGCGGGTAGTGGACAACATACCAAGATG
GTGAATCAGATTTTGATTGCAAATACTATGATTGGTACGTCGTGATTTCG
CCCCAGGTTTCTACGTCGACCATTTTCTCAAGGACTTAGGCATCGCCCTC
GAGGAGGCGCGGAGGATGAACCTCGCCTTACCGGGGCTGGCCCTCGCCAA
TCAAATGTACGTAGCGTTGAAGGCGCAGGGAGGAGGGAGACTTGGCACGC
AGGGACTGCTGCTCGTCCTGGAACGACTGAACGGTCTGCAGCAGAAGGAG
GAGAATGAGGGGTAGGCGTCTGCGAAGGTCTTTTATACGCGCAGAGAGTG
GGGCTGGACCTGACTGATATCATCGCGGCCGTGGGTGCTGGAGCGGCAGG
TAGCTTCAGCATCAATAACCTGGGCCCGCGGATGATGGGTTGCAGCATGG
TGTCCCATCTGCTCGGCGCAGGGTACCACTGCACCATCTACAACCGAAGC
CCTTCGAAATGCATTCCCTCGAAAGCTAAGGGCGCGGTCATTGCTACCTC
ACCCAAAGCCGTCGCTGAGCAAGCTGACGTCGTCTTTGTCATCGTTGGCT
TTCCCACGGACGTGCGCGAGGTGGTCCTGGGGCATGATGGAGTCTTTGCG
GGATTAAAGCGAGGGGGGGTCTTAATCGATTGCACTACCTCCACTCCGAG
CCTGGCGCAAGAGATCTACACACAAGGGCAACAAAAAGGTGTGGCCACCA
TTGATGCCCCCGTGTCGGGCGGGGACATAGGCGCCAAGACAGCGGAATTG
TCATTTATGTTGGGGGGGGACAAAGAGGCTGTGGAGAGGTCACGGCCATT
ACTTGATCTGATGGGGAAAAATGCCAGGTATATGGGAGGAGCGGGTAGTG
GACAACATACCAAGATGGTGAATCAGATTTTGATTGCAAATACTATGATT
G
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Synonyms
Publications