jgi.p|Nanoce1779_2|674640, mRNA_9980 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|674640
Unique Name	mRNA_9980
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1476
Alignment location	scaffold_49:78449..80657 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	674726
Track	FilteredModels2
ProteinId	674640

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_49	supercontig	scaffold_49:78449..80657 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|674640	gene_9980	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|674640	mRNA_9980-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9980	CDS_9980	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_49:78449..80657+
coding sequence from alignment at scaffold_49:78449..80657+

mRNA sequence

>mRNA_9980 ID=mRNA_9980|Name=jgi.p|Nanoce1779_2|674640|organism=Nannochloropsis oceanica|type=mRNA|length=1476bp
GTCCCTTCCCTGGCACACTCACGGGCAAAACCACAAGACGATGCGCGCAG
AAATCGTGCTAGCTGCAACAAAGCTTTTAAACGAGCATGTATAGTGTCCC
CGCAAGTGAAATATTTTCGCTTGCCGTGGCAGCCACTTCTCTAGTTCTTC
CTGCCTCCCTCCTCTCCTTCCCTATGAGACGACGGACCCTATGTGACATC
GCCTACCTAACACGTCTCGGCGGAACTTGCAAATCTACGACGTCCTTCTC
TTTACATGCCCTTGATTTCCTTGTGGACTAGTACACACCTGCCTGCCTTA
ACACCACCTATTGTACTTGGAGTGGTTTGCTTTTGTCTTTTTGCCCCTCC
GTCCAAGGCCCGTTAATCTCCCCCAGCAGATGTCAATTCAGATAAGCAAG
GGAGCCGAAAAGGCAAGAACGAGACGACGTGGACACGTCCGTATATCTTT
AACCTTCTTCCGCTAAATCGCATTCTCTGTCCTCCCAGACATACACCGTC
TCACTCAAGTTCTGATAATTGCTCGTCTCCCTTCCTCTCTCCTTTCCCTC
CTCCCCCCTTCCCTCTTGCCACATCCATACAGCGGCCCCCAGAAAAGGAA
TCTAAAATGGCTTCTACTTCCACTACCGCCACTCCCCCCCTTACGGGCCC
GGTCAAGAAGGCCGAGAACCTGCAACTTGCTGGCGCTCCCTCGGGTGCGG
GTGGCAGCCCCGTAGCGAATGGGTGTGTGCCTAGGTTCGGTGCGATGACA
AAATTTCAAAGCCCTCGCTTGTACTTCCTGGGCTTGACACCCCGCACCAA
GGCGACGTTGGGCACGGAGGATTACACGGAGGCCTTGCGGGAAATGCGGG
GAATCTTTCCGGAGGCCCAAGACTCGGACATGGTCCCGTTTATCCGCATC
TGCAAAGGCGTCGTCAAGGAAGCCAGTAAGATGTACGGGGATTGCCTGAC
GTGGCGCTCGACCATGCTGCCCGTCAGCAGAGACTCGTGCCTCTCGGTGT
TGCAGCGTGGGATGTTCTTCTTCCACGGTGAGGACAAGGAGGGGCGGCCT
CTGGGCTACCTGACGATGCGCGGGCATGACCCAAAGACTCGGGATTTGGA
CCAGTGCTTACGGGCCATCATTTACCAGTGCGAGGCCCTGATTGCGAGCA
AGGAGGGGAAGGAGTTTCAGGTGACCATCATCCTGGACCGCAACGGGACA
ACGAAGCAGAACCAGGATTCGGACATGATGAAGCTCTTCTTTGCCCTCTT
CTCGGAGCGCTACCCTGACAAGCTGCGCCGTGTGTTGGTGTGCCCTGCGA
ATTTCATGTTTAATACCTTCTGGTCCGTGATTAAGTATTCTATGCCCGAG
CGTGTGAGGAACAAGGTGACCATGTGTAACAACGAGGCGGCCTTGACTCA
GTTTGTGGACCCCGAGCAACTCATTGATTCCTTAGGGGGGAAGGATGCCT
ATGACCCCACCAAGGCGGATTTTTAA

protein sequence of jgi.p|Nanoce1779_2|674640

>mRNA_9980-protein ID=mRNA_9980-protein|Name=jgi.p|Nanoce1779_2|674640|organism=Nannochloropsis oceanica|type=polypeptide|length=290bp
MASTSTTATPPLTGPVKKAENLQLAGAPSGAGGSPVANGCVPRFGAMTKF
QSPRLYFLGLTPRTKATLGTEDYTEALREMRGIFPEAQDSDMVPFIRICK
GVVKEASKMYGDCLTWRSTMLPVSRDSCLSVLQRGMFFFHGEDKEGRPLG
YLTMRGHDPKTRDLDQCLRAIIYQCEALIASKEGKEFQVTIILDRNGTTK
QNQDSDMMKLFFALFSERYPDKLRRVLVCPANFMFNTFWSVIKYSMPERV
RNKVTMCNNEAALTQFVDPEQLIDSLGGKDAYDPTKADF*

mRNA from alignment at scaffold_49:78449..80657+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9980 ID=mRNA_9980|Name=jgi.p|Nanoce1779_2|674640|organism=Nannochloropsis oceanica|type=mRNA|length=2209bp|location=Sequence derived from alignment at scaffold_49:78449..80657+ (Nannochloropsis oceanica)
GTCCCTTCCCTGGCACACTCACGGGCAAAACCACAAGACGATGCGCGCAG
AAATCGTGCTAGCTGCAACAAAGCTTTTAAACGAGCATGTATAGTGTCCC
CGCAAGTGAAATATTTTCGCTTGCCGTGGCAGCCACTTCTCTAGTTCTTC
CTGCCTCCCTCCTCTCCTTCCCTATGAGACGACGGACCCTATGTGACATC
GCCTACCTAACACGTCTCGGCGGAACTTGCAAATCTACGACGTCCTTCTC
TTTACATGCCCTTGATTTCCTTGTGGACTAGTACACACCTGCCTGCCTTA
ACACCACCTATTGTACTTGGAGTGGTTTGCTTTTGTCTTTTTGCCCCTCC
GTCCAAGGCCCGTTAATCTCCCCCAGCAGATGTCAATTCAGATAAGCAAG
GGAGCCGAAAAGGCAAGAACGAGACGACGTGGACACGTCCGTATATCTTT
AACCTTCTTCCGCTAAATCGCATTCTCTGTCCTCCCAGACATACACCGTC
TCACTCAAGTTCTGATAATTGCTCGTCTCCCTTCCTCTCTCCTTTCCCTC
CTCCCCCCTTCCCTCTTGCCACATCCATACAGCGGCCCCCAGAAAAGGAA
TCTAAAATGGCTTCTACTTCCACTACCGCCACTCCCCCCCTTACGGGCCC
GGTCAAGAAGGCCGAGAACCTGCAACTTGCTGGCGCTCCCTCGGGTGCGG
GTGGCAGCCCCGTAGCGAATGGGTGTGTGCCTAGGTTCGGTGCGATGACA
AAATTTCAAAGCCCTCGCTTGTACTTCCTGGGCTTGACACCCCGCACCAA
GGCGACGTTGGGCACGGAGGATTACACGGAGGCCTTGCGGGAAATGCGGG
GAATCTTTCCGGAGGTAGGATGAGAGGGAGAGGGGGAGGGAGGGAGGGAG
GGAAGGATTGAGAGGGAGGGAGGGAGTATGGGGGAAGGAGGAGGCGGAGA
TGGAAATCGGTGAGCGAGTCTTTCCTAATGTCAAAGAAGAAGGGAGGATA
GCGGATAGACCACGGAGGGAGAGAAGCACGCATTGATTGCAGCAAAGATG
TAAAGGCATGCATGCACTCTCTCACGTCCCTCACCCTTTCTTCATTTCCT
TCCATCCAGGCCCAAGACTCGGACATGGTCCCGTTTATCCGCATCTGCAA
AGGCGTCGTCAAGGAAGCCAGTAAGATGTACGGGGATTGCCTGACGTGGC
GCTCGACCATGCTGCCCGTCAGCAGAGACTCGTGCCTCTCGGTGTTGCAG
CGTGGGATGTTCTTCTTCCACGGTGAGGACAAGGAGGGGCGGCCTCTGGG
CTACCTGACGATGCGCGGGCATGACCCAAAGACTCGGGATTTGGACCAGT
GCTTACGGGCCATCATTTACCAGTGCGAGGCCCTGATTGCGAGCAAGGAG
GGGAAGGAGTTTCAGGTACGTGTCTGTCGGGAGGGGTATGTAGTTTGAAG
CTCTTATTTTATAGATTATGAAAAGATTTAATTTATGGTTTGTTAACTCA
AGGAGATATTTCTACTTCGTGGCCAATGTGTTATGGGTCTTGGGGGTTCT
GCCTCGTATATTCTTCTCCCCTGTCGAAATCTCCACCATCTTGGCAAGCA
CACTCAATCCCTCCCTCCCTTTCCCCCCTCTCTCTCTCCCTCCCTCCCTC
CCCTCTTCCCCAAGGTGACCATCATCCTGGACCGCAACGGGACAACGAAG
CAGAACCAGGATTCGGACATGATGAAGCTCTTCTTTGCCCTCTTCTCGGA
GCGCTACCCTGGTAAGGAGAAGGGGAGGGAGGGACTGAAGGAAGGAGGGG
GGGCGGCAATTTGGGAGTAAAAGAACACAGTCCATCCAAATCCCTCCCTC
CCTCCCTCCCTCCTCTCCTCATTTTCAAACAAAGAGACTGTACCGTATTT
TGGTAGAGCCCGTCGTACCTCTTCTCCAAACTCCAAACTCATCCCTCCCC
CCCCAACCTCCCTCCCTCCCTCCCTCCCTCCCTGCTTTCCACCCCTCCAG
ACAAGCTGCGCCGTGTGTTGGTGTGCCCTGCGAATTTCATGTTTAATACC
TTCTGGTCCGTGATTAAGTATTCTATGCCCGAGCGTGTGAGGAACAAGGT
GACCATGTGTAACAACGAGGCGGCCTTGACTCAGTTTGTGGACCCCGAGC
AACTCATTGATTCCTTAGGGGGGAAGGATGCCTATGACCCCACCAAGGCG
GATTTTTAA

Coding sequence (CDS) from alignment at scaffold_49:78449..80657+

>mRNA_9980 ID=mRNA_9980|Name=jgi.p|Nanoce1779_2|674640|organism=Nannochloropsis oceanica|type=CDS|length=3480bp|location=Sequence derived from alignment at scaffold_49:78449..80657+ (Nannochloropsis oceanica)
ATGGCTTCTACTTCCACTACCGCCACTCCCCCCCTTACGGGCCCGGTCAA
GAAGGCCGAGAACCTGCAACTTGCTGGCGCTCCCTCGGGTGCGGGTGGCA
GCCCCGTAGCGAATGGGTGTGTGCCTAGGTTCGGTGCGATGACAAAATTT
CAAAGCCCTCGCTTGTACTTCCTGGGCTTGACACCCCGCACCAAGGCGAC
GTTGGGCACGGAGGATTACACGGAGGCCTTGCGGGAAATGCGGGGAATCT
TTCCGGAGGCCCAAGACTCGGACATGGTCCCGTTTATCCGCATCTGCAAA
GGCGTCGTCAAGGAAGCCAGTAAGATGTACGGGGATTGCCTGACGTGGCG
CTCGACCATGCTGCCCGTCAGCAGAGACTCGTGCCTCTCGGTGTTGCAGC
GTGGGATGTTCTTCTTCCACGGTGAGGACAAGGAGGGGCGGCCTCTGGGC
TACCTGACGATGCGCGGGCATGACCCAAAGACTCGGGATTTGGACCAGTG
CTTACGGGCCATCATTTACCAGTGCGAGGCCCTGATTGCGAGCAAGGAGG
GGAAGGAGTTTCAGGTGACCATCATCCTGGACCGCAACGGGACAACGAAG
CAGAACCAGGATTCGGACATGATGAAGCTCTTCTTTGCCCTCTTCTCGGA
GCGCTACCCTGACAAGCTGCGCCGTGTGTTGGTGTGCCCTGCGAATTTCA
TGTTTAATACCTTCTGGTCCGTGATTAAGTATTCTATGCCCGAGCGTGTG
AGGAACAAGGTGACCATGTGTAACAACGAGGCGGCCTTGACTCAGTTTGT
GGACCCCGAGCAACTCATTGATTCCTTAGGGGGGAAGGATGCCTATGACC
CCACCAAGGCGGATTTTTAAATGGCTTCTACTTCCACTACCGCCACTCCC
CCCCTTACGGGCCCGGTCAAGAAGGCCGAGAACCTGCAACTTGCTGGCGC
TCCCTCGGGTGCGGGTGGCAGCCCCGTAGCGAATGGGTGTGTGCCTAGGT
TCGGTGCGATGACAAAATTTCAAAGCCCTCGCTTGTACTTCCTGGGCTTG
ACACCCCGCACCAAGGCGACGTTGGGCACGGAGGATTACACGGAGGCCTT
GCGGGAAATGCGGGGAATCTTTCCGGAGGCCCAAGACTCGGACATGGTCC
CGTTTATCCGCATCTGCAAAGGCGTCGTCAAGGAAGCCAGTAAGATGTAC
GGGGATTGCCTGACGTGGCGCTCGACCATGCTGCCCGTCAGCAGAGACTC
GTGCCTCTCGGTGTTGCAGCGTGGGATGTTCTTCTTCCACGGTGAGGACA
AGGAGGGGCGGCCTCTGGGCTACCTGACGATGCGCGGGCATGACCCAAAG
ACTCGGGATTTGGACCAGTGCTTACGGGCCATCATTTACCAGTGCGAGGC
CCTGATTGCGAGCAAGGAGGGGAAGGAGTTTCAGGTGACCATCATCCTGG
ACCGCAACGGGACAACGAAGCAGAACCAGGATTCGGACATGATGAAGCTC
TTCTTTGCCCTCTTCTCGGAGCGCTACCCTGACAAGCTGCGCCGTGTGTT
GGTGTGCCCTGCGAATTTCATGTTTAATACCTTCTGGTCCGTGATTAAGT
ATTCTATGCCCGAGCGTGTGAGGAACAAGGTGACCATGTGTAACAACGAG
GCGGCCTTGACTCAGTTTGTGGACCCCGAGCAACTCATTGATTCCTTAGG
GGGGAAGGATGCCTATGACCCCACCAAGGCGGATTTTTAAATGGCTTCTA
CTTCCACTACCGCCACTCCCCCCCTTACGGGCCCGGTCAAGAAGGCCGAG
AACCTGCAACTTGCTGGCGCTCCCTCGGGTGCGGGTGGCAGCCCCGTAGC
GAATGGGTGTGTGCCTAGGTTCGGTGCGATGACAAAATTTCAAAGCCCTC
GCTTGTACTTCCTGGGCTTGACACCCCGCACCAAGGCGACGTTGGGCACG
GAGGATTACACGGAGGCCTTGCGGGAAATGCGGGGAATCTTTCCGGAGGC
CCAAGACTCGGACATGGTCCCGTTTATCCGCATCTGCAAAGGCGTCGTCA
AGGAAGCCAGTAAGATGTACGGGGATTGCCTGACGTGGCGCTCGACCATG
CTGCCCGTCAGCAGAGACTCGTGCCTCTCGGTGTTGCAGCGTGGGATGTT
CTTCTTCCACGGTGAGGACAAGGAGGGGCGGCCTCTGGGCTACCTGACGA
TGCGCGGGCATGACCCAAAGACTCGGGATTTGGACCAGTGCTTACGGGCC
ATCATTTACCAGTGCGAGGCCCTGATTGCGAGCAAGGAGGGGAAGGAGTT
TCAGGTGACCATCATCCTGGACCGCAACGGGACAACGAAGCAGAACCAGG
ATTCGGACATGATGAAGCTCTTCTTTGCCCTCTTCTCGGAGCGCTACCCT
GACAAGCTGCGCCGTGTGTTGGTGTGCCCTGCGAATTTCATGTTTAATAC
CTTCTGGTCCGTGATTAAGTATTCTATGCCCGAGCGTGTGAGGAACAAGG
TGACCATGTGTAACAACGAGGCGGCCTTGACTCAGTTTGTGGACCCCGAG
CAACTCATTGATTCCTTAGGGGGGAAGGATGCCTATGACCCCACCAAGGC
GGATTTTTAAATGGCTTCTACTTCCACTACCGCCACTCCCCCCCTTACGG
GCCCGGTCAAGAAGGCCGAGAACCTGCAACTTGCTGGCGCTCCCTCGGGT
GCGGGTGGCAGCCCCGTAGCGAATGGGTGTGTGCCTAGGTTCGGTGCGAT
GACAAAATTTCAAAGCCCTCGCTTGTACTTCCTGGGCTTGACACCCCGCA
CCAAGGCGACGTTGGGCACGGAGGATTACACGGAGGCCTTGCGGGAAATG
CGGGGAATCTTTCCGGAGGCCCAAGACTCGGACATGGTCCCGTTTATCCG
CATCTGCAAAGGCGTCGTCAAGGAAGCCAGTAAGATGTACGGGGATTGCC
TGACGTGGCGCTCGACCATGCTGCCCGTCAGCAGAGACTCGTGCCTCTCG
GTGTTGCAGCGTGGGATGTTCTTCTTCCACGGTGAGGACAAGGAGGGGCG
GCCTCTGGGCTACCTGACGATGCGCGGGCATGACCCAAAGACTCGGGATT
TGGACCAGTGCTTACGGGCCATCATTTACCAGTGCGAGGCCCTGATTGCG
AGCAAGGAGGGGAAGGAGTTTCAGGTGACCATCATCCTGGACCGCAACGG
GACAACGAAGCAGAACCAGGATTCGGACATGATGAAGCTCTTCTTTGCCC
TCTTCTCGGAGCGCTACCCTGACAAGCTGCGCCGTGTGTTGGTGTGCCCT
GCGAATTTCATGTTTAATACCTTCTGGTCCGTGATTAAGTATTCTATGCC
CGAGCGTGTGAGGAACAAGGTGACCATGTGTAACAACGAGGCGGCCTTGA
CTCAGTTTGTGGACCCCGAGCAACTCATTGATTCCTTAGGGGGGAAGGAT
GCCTATGACCCCACCAAGGCGGATTTTTAA

Synonyms

Publications