jgi.p|Nanoce1779_2|574967, mRNA_998 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|574967
Unique Name	mRNA_998
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1063
Alignment location	scaffold_2:971186..972796 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	575053
Track	FilteredModels2
ProteinId	574967

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:971186..972796 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574967	gene_998	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574967	mRNA_998-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_998	CDS_998	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:971186..972796+
coding sequence from alignment at scaffold_2:971186..972796+

mRNA sequence

>mRNA_998 ID=mRNA_998|Name=jgi.p|Nanoce1779_2|574967|organism=Nannochloropsis oceanica|type=mRNA|length=1063bp
AGCACAATGAGCAGCAACAGCAGTAGCAGCAGCAGCAACAAGGCAGTGGT
TGCCTTGGCGGAGGAGCTCAAACTTAAGGGCATCGAAACGTACAGGACGG
GTAAGCCCTCCCTCCCTCGACGCCCTCCTTCCCTCTTTGCCTGACTTCAA
AGAGGACCACCTTCTCAGCGCTGAATGAAACGAGGGCACTCAAGTTATAA
GTTGTCCTCCTTCTCCTCCTCCCTTTGTCCCTTGTCTTTGACCTTTTCCC
CACCACCTTTGGTAATCATTTCTTCCTATCCTTCCAGAATTTCCTCGCAA
AATCGTTCTGATGAGCAGCCTCCTTAGCAACGAACTCCTGAAAATGGAGA
ATGATGCCGTGCTGCCCCCGGAGTCGGAAGTGACGCCTGTTATACATCCC
ATACCAACAACGAGTGAAACAGCCGCAGCTGGAGGAAGGGAGGGAGAGGC
GGCGGGAGGGGCTCGGAGGAAGAAACGGAAGATGGATGTAGCAGTGGCAC
ATACCGCAATTGCGCACTCCGACTCGGAGGAGGAGTCCGAGGACGAAATG
GGCCATTTGAATGGGCGGCATGTGCATGCGCATTGGGATTACACTCATGA
TTTTGCGGTGCCTTGTAACAAGACAATCATCAAGGTGATCGAGTTGCTGC
GGAAGGAGTGGAAAGAGGCCATTGAACTGGTGGGAGCGGTGAAGCTTTGG
ATTCAACTAAGCATCCCGCCGATTGAGTCGGGGGGACAGTTCCACGTGGG
CGTGCAAGAGGAGTGTGTCCAAGAGCTCAATCGCTTTGAGGATGTGGCTT
ACAACTACCTCGAGTCCCCCACAAAGTATTTTCAAACCCGAGCCAAGCTC
GGCGCCAAGCTATCGCGACATCGCTCTGTTTTCGACTATCGACAATCTCT
GCTCGAGGCCGACTCGTTGGAGTACCTGAATTTAAAGATGGCAGCGACGG
AGCTGCGAAACTCGTATCTGGTCGCCTATGACTTGCTCTCCAAGAACGAA
GACAAGCTCTCGACCAAGAATCAGAGCTTCGGCTCACATATGACCATCTA
GATGGAGGGAGGG

protein sequence of jgi.p|Nanoce1779_2|574967

>mRNA_998-protein ID=mRNA_998-protein|Name=jgi.p|Nanoce1779_2|574967|organism=Nannochloropsis oceanica|type=polypeptide|length=247bp
MSSLLSNELLKMENDAVLPPESEVTPVIHPIPTTSETAAAGGREGEAAGG
ARRKKRKMDVAVAHTAIAHSDSEEESEDEMGHLNGRHVHAHWDYTHDFAV
PCNKTIIKVIELLRKEWKEAIELVGAVKLWIQLSIPPIESGGQFHVGVQE
ECVQELNRFEDVAYNYLESPTKYFQTRAKLGAKLSRHRSVFDYRQSLLEA
DSLEYLNLKMAATELRNSYLVAYDLLSKNEDKLSTKNQSFGSHMTI*

mRNA from alignment at scaffold_2:971186..972796+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_998 ID=mRNA_998|Name=jgi.p|Nanoce1779_2|574967|organism=Nannochloropsis oceanica|type=mRNA|length=1611bp|location=Sequence derived from alignment at scaffold_2:971186..972796+ (Nannochloropsis oceanica)
AGCACAATGAGCAGCAACAGCAGTAGCAGCAGCAGCAACAAGGCAGTGGT
TGCCTTGGCGGAGGAGCTCAAACTTAAGGGCATCGAAACGTACAGGACGG
GTAAGCCCTCCCTCCCTCGACGCCCTCCTTCCCTCTTTGCCTGACTTCAA
AGAGGACCACCTTCTCAGCGCTGAATGAAACGAGGGCACTCAAGTTATAA
GTTGTCCTCCTTCTCCTCCTCCCTTTGTCCCTTGTCTTTGACCTTTTCCC
CACCACCTTTGGTAATCATTTCTTCCTATCCTTCCAGAATTTCCTCGCAA
AATCGTTCTGATGAGCAGCCTCCTTAGCAACGAACTCCTGAAAATGGAGA
ATGATGCCGTGCTGCCCCCGGAGTCGGAAGTGACGCCTGTTATACATCCC
ATACCAACAACGAGTGAAACAGCCGCAGCTGGAGGAAGGGAGGGAGAGGC
GGCGGGAGGGGCTCGGAGGAAGAAACGGAAGATGGATGTAGCAGTGGCAC
ATACCGCAATTGCGCACTCCGACTCGGAGGAGGAGTCCGAGGACGAAATG
GGCCATTTGAATGGGCGGCATGTGCATGCGCATTGGGATTACACTCATGA
TTTTGCGGTGCCTTGTAACAAGACAATCATCAAGGTGGGCACCACTTCCC
CACCCCACCGCACTAGCTCTTCCCTTTTTCCATACCTTCCTCCTTCCCTT
CATTCACTTCCCGACGTCCATGCTCTCACTCGCCAATCAATCTCTCTCAA
CATTCTATCCAGGTGATCGAGTTGCTGCGGAAGGAGTGGAAAGAGGCCAT
TGAACTGGTGGGAGCGGTGAAGCTTTGGATTCAACTAAGCATCCCGCCGA
TTGAGTCGGGGGGACAGTTCCACGTGGGCGTGCAAGAGGAGTGTGTCCAA
GAGCTCAATCGCTTTGAGGATGTGGTACGTCTTGTTAAGAGGACGGCCAA
GAGGGGGGGAATTTGGCGTGGCGAGGCAGAGGGCGGCAAGGGTCTATGCG
GGAGAGCTCGGGTGTGTGTAGGCATGAGAGAGGCAGCGACTTTGATAGTA
CATTTAAAAGACTGGCGGAAGAAATCGACCCCATTGAGAATCCCCCCCCC
CCCTTCTCACTCACTTAAGGCCTAGTTGGAAACTCCCATGGTAATGCTCA
CCGTATTGACTCTTTCCTCTTTCCCCCCTCCCCCTTACACAGGCTTACAA
CTACCTCGAGTCCCCCACAAAGTATTTTCAAACCCGAGCCAAGCTCGGCG
CCAAGCTATCGCGACATCGCTCTGTTTTCGACTATCGACAATCTCTGCTC
GAGGCCGACTCGTTGGAGTACCTGAATTTAAAGATGGCAGCGACGGAGCT
GCGAAACTCGGTACGTGTCTTTCCTTGAGTGGCGCGTTGAGATGGGATCG
GAAATGGAAAGCTCAATCACCCATCCATCTTAATCACCCATCCGGCGTCT
TGTGTATCCGCATGCCTGCTCAACCTCTTTTCCACTCTTCGTCCCTCACT
CCGGCTCCACAGTATCTGGTCGCCTATGACTTGCTCTCCAAGAACGAAGA
CAAGCTCTCGACCAAGAATCAGAGCTTCGGCTCACATATGACCATCTAGA
TGGAGGGAGGG

Coding sequence (CDS) from alignment at scaffold_2:971186..972796+

>mRNA_998 ID=mRNA_998|Name=jgi.p|Nanoce1779_2|574967|organism=Nannochloropsis oceanica|type=CDS|length=2964bp|location=Sequence derived from alignment at scaffold_2:971186..972796+ (Nannochloropsis oceanica)
ATGAGCAGCCTCCTTAGCAACGAACTCCTGAAAATGGAGAATGATGCCGT
GCTGCCCCCGGAGTCGGAAGTGACGCCTGTTATACATCCCATACCAACAA
CGAGTGAAACAGCCGCAGCTGGAGGAAGGGAGGGAGAGGCGGCGGGAGGG
GCTCGGAGGAAGAAACGGAAGATGGATGTAGCAGTGGCACATACCGCAAT
TGCGCACTCCGACTCGGAGGAGGAGTCCGAGGACGAAATGGGCCATTTGA
ATGGGCGGCATGTGCATGCGCATTGGGATTACACTCATGATTTTGCGGTG
CCTTGTAACAAGACAATCATCAAGGTGATCGAGTTGCTGCGGAAGGAGTG
GAAAGAGGCCATTGAACTGGTGGGAGCGGTGAAGCTTTGGATTCAACTAA
GCATCCCGCCGATTGAGTCGGGGGGACAGTTCCACGTGGGCGTGCAAGAG
GAGTGTGTCCAAGAGCTCAATCGCTTTGAGGATGTGGCTTACAACTACCT
CGAGTCCCCCACAAAGTATTTTCAAACCCGAGCCAAGCTCGGCGCCAAGC
TATCGCGACATCGCTCTGTTTTCGACTATCGACAATCTCTGCTCGAGGCC
GACTCGTTGGAGTACCTGAATTTAAAGATGGCAGCGACGGAGCTGCGAAA
CTCGTATCTGGTCGCCTATGACTTGCTCTCCAAGAACGAAGACAAGCTCT
CGACCAAGAATCAGAGCTTCGGCTCACATATGACCATCTAGATGAGCAGC
CTCCTTAGCAACGAACTCCTGAAAATGGAGAATGATGCCGTGCTGCCCCC
GGAGTCGGAAGTGACGCCTGTTATACATCCCATACCAACAACGAGTGAAA
CAGCCGCAGCTGGAGGAAGGGAGGGAGAGGCGGCGGGAGGGGCTCGGAGG
AAGAAACGGAAGATGGATGTAGCAGTGGCACATACCGCAATTGCGCACTC
CGACTCGGAGGAGGAGTCCGAGGACGAAATGGGCCATTTGAATGGGCGGC
ATGTGCATGCGCATTGGGATTACACTCATGATTTTGCGGTGCCTTGTAAC
AAGACAATCATCAAGGTGATCGAGTTGCTGCGGAAGGAGTGGAAAGAGGC
CATTGAACTGGTGGGAGCGGTGAAGCTTTGGATTCAACTAAGCATCCCGC
CGATTGAGTCGGGGGGACAGTTCCACGTGGGCGTGCAAGAGGAGTGTGTC
CAAGAGCTCAATCGCTTTGAGGATGTGGCTTACAACTACCTCGAGTCCCC
CACAAAGTATTTTCAAACCCGAGCCAAGCTCGGCGCCAAGCTATCGCGAC
ATCGCTCTGTTTTCGACTATCGACAATCTCTGCTCGAGGCCGACTCGTTG
GAGTACCTGAATTTAAAGATGGCAGCGACGGAGCTGCGAAACTCGTATCT
GGTCGCCTATGACTTGCTCTCCAAGAACGAAGACAAGCTCTCGACCAAGA
ATCAGAGCTTCGGCTCACATATGACCATCTAGATGAGCAGCCTCCTTAGC
AACGAACTCCTGAAAATGGAGAATGATGCCGTGCTGCCCCCGGAGTCGGA
AGTGACGCCTGTTATACATCCCATACCAACAACGAGTGAAACAGCCGCAG
CTGGAGGAAGGGAGGGAGAGGCGGCGGGAGGGGCTCGGAGGAAGAAACGG
AAGATGGATGTAGCAGTGGCACATACCGCAATTGCGCACTCCGACTCGGA
GGAGGAGTCCGAGGACGAAATGGGCCATTTGAATGGGCGGCATGTGCATG
CGCATTGGGATTACACTCATGATTTTGCGGTGCCTTGTAACAAGACAATC
ATCAAGGTGATCGAGTTGCTGCGGAAGGAGTGGAAAGAGGCCATTGAACT
GGTGGGAGCGGTGAAGCTTTGGATTCAACTAAGCATCCCGCCGATTGAGT
CGGGGGGACAGTTCCACGTGGGCGTGCAAGAGGAGTGTGTCCAAGAGCTC
AATCGCTTTGAGGATGTGGCTTACAACTACCTCGAGTCCCCCACAAAGTA
TTTTCAAACCCGAGCCAAGCTCGGCGCCAAGCTATCGCGACATCGCTCTG
TTTTCGACTATCGACAATCTCTGCTCGAGGCCGACTCGTTGGAGTACCTG
AATTTAAAGATGGCAGCGACGGAGCTGCGAAACTCGTATCTGGTCGCCTA
TGACTTGCTCTCCAAGAACGAAGACAAGCTCTCGACCAAGAATCAGAGCT
TCGGCTCACATATGACCATCTAGATGAGCAGCCTCCTTAGCAACGAACTC
CTGAAAATGGAGAATGATGCCGTGCTGCCCCCGGAGTCGGAAGTGACGCC
TGTTATACATCCCATACCAACAACGAGTGAAACAGCCGCAGCTGGAGGAA
GGGAGGGAGAGGCGGCGGGAGGGGCTCGGAGGAAGAAACGGAAGATGGAT
GTAGCAGTGGCACATACCGCAATTGCGCACTCCGACTCGGAGGAGGAGTC
CGAGGACGAAATGGGCCATTTGAATGGGCGGCATGTGCATGCGCATTGGG
ATTACACTCATGATTTTGCGGTGCCTTGTAACAAGACAATCATCAAGGTG
ATCGAGTTGCTGCGGAAGGAGTGGAAAGAGGCCATTGAACTGGTGGGAGC
GGTGAAGCTTTGGATTCAACTAAGCATCCCGCCGATTGAGTCGGGGGGAC
AGTTCCACGTGGGCGTGCAAGAGGAGTGTGTCCAAGAGCTCAATCGCTTT
GAGGATGTGGCTTACAACTACCTCGAGTCCCCCACAAAGTATTTTCAAAC
CCGAGCCAAGCTCGGCGCCAAGCTATCGCGACATCGCTCTGTTTTCGACT
ATCGACAATCTCTGCTCGAGGCCGACTCGTTGGAGTACCTGAATTTAAAG
ATGGCAGCGACGGAGCTGCGAAACTCGTATCTGGTCGCCTATGACTTGCT
CTCCAAGAACGAAGACAAGCTCTCGACCAAGAATCAGAGCTTCGGCTCAC
ATATGACCATCTAG

Synonyms

Publications