jgi.p|Nanoce1779_2|324389, mRNA_9979 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|324389
Unique NamemRNA_9979
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1193
Alignment locationscaffold_49:75239..76431 -

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Properties
Property NameValue
TranscriptId324475
TrackFilteredModels2
ProteinId324389
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:75239..76431 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|324389gene_9979Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|324389mRNA_9979-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9979CDS_9979Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9979 ID=mRNA_9979|Name=jgi.p|Nanoce1779_2|324389|organism=Nannochloropsis oceanica|type=mRNA|length=1193bp
AGGGAGGGTGGGGTGGGCGGGACGAGTGCCAGTGGTGAGTGGAAGATTGT
TAAGAGGCGTGTTTACGTCGATGGGGGAGGAAGGGAGGAGGAGGGAAGGG
AAGGGAGAAGATGACGAAGAGGAAGAGGAGCATGACGACGAGGAGGAGGA
GGAGGAGTGGGAGGGAGAAGAAGAGGAGGCGGAGGAGGAGGAGGGGGGAG
GGGGAGGAGGAGGCGTGGCGTTTGGCTCTCGCAGAAGAACGACGGGCCAT
GCAGTCGACTGTGAGCAACCTCCCTCTTTTGGGGAGCGAGGCCATCCTCC
CTTCCCTCCCTCCCTCCCTCCCTTCCTCGTCCTCGGCCTCGGCGCTGCGG
GCGTGGAGGAAGGAAAATTTAATTCTGCCCTGGGGTCCACTTCCTGAGAA
ATGGCGAGGGATAGGGAAGATCGATCCCTCTGTGTGGGTGCTTGGGGAGG
GAGGTGAGGAAGAGGAGGAGGAAGGGGGGGAGGGGCACGACGTTTGGTTG
GAGGAAGAGGATGGGGAGGAGGAAGAAGAGGAGGGGCGGGAGGAGAGGGA
GTTCGTGCTTGCCGGGGGGCTGAGGTCGTCGTCGTCGTCAACGCTGCTCC
TGCATGAGCAGCGGCGGCAGCAGCAGCAGCAGCAGGAGGAGGGGGAGGAG
GGGGAAGGAGAGAGACGAGGACGAGGAGGAGGAGGAGTACGTCATCCTTC
TCCCTCTACTTCCTCTTTTGCTGCTATCTCTGCTCCCTTCGCCCGTCGTC
CCGATACTGTCGAGCAGGCAGGCAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAAAGGCTGCCAGATCTAACGGCGATGGTCGGGGCGTCGCTGGAGGAGCA
GGTAAAGAGTGAATACGGTCCCATGAAATTTCGGAGTTTCTTCTTCCGAG
CGCAGCCTTCTTTCCTGTCGCCGTTTACGAGGGGCATGATGGGGAGGGAG
GGAGGGAGGGAAGGAGGGAGGGAGGAAGGGAAAGAGGAGGGGGCGAGGGC
GGTGTTGTGCGACGTGTTGAGTGTACTGGACTATCACCATGGAGGGGGAG
GAATGGGGGGAAGGCGGGGAGCGTGGACACGGGGCGTGGAGAGGGAGAAC
GAGGAGGAGGAGAAGAAGGAAGAGTGAGATGGTGTATATTGATTGTTTAA
ATACCAAGGGGAGAGGGAGGTGGGTGGAAGGGAGGAAGGAAGG
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protein sequence of jgi.p|Nanoce1779_2|324389

>mRNA_9979-protein ID=mRNA_9979-protein|Name=jgi.p|Nanoce1779_2|324389|organism=Nannochloropsis oceanica|type=polypeptide|length=339bp
MTKRKRSMTTRRRRRSGREKKRRRRRRRGEGEEEAWRLALAEERRAMQST
VSNLPLLGSEAILPSLPPSLPSSSSASALRAWRKENLILPWGPLPEKWRG
IGKIDPSVWVLGEGGEEEEEEGGEGHDVWLEEEDGEEEEEEGREEREFVL
AGGLRSSSSSTLLLHEQRRQQQQQQEEGEEGEGERRGRGGGGVRHPSPST
SSFAAISAPFARRPDTVEQAGREGGREGGRERLPDLTAMVGASLEEQVKS
EYGPMKFRSFFFRAQPSFLSPFTRGMMGREGGREGGREEGKEEGARAVLC
DVLSVLDYHHGGGGMGGRRGAWTRGVERENEEEEKKEE*
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mRNA from alignment at scaffold_49:75239..76431-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9979 ID=mRNA_9979|Name=jgi.p|Nanoce1779_2|324389|organism=Nannochloropsis oceanica|type=mRNA|length=1193bp|location=Sequence derived from alignment at scaffold_49:75239..76431- (Nannochloropsis oceanica)
AGGGAGGGTGGGGTGGGCGGGACGAGTGCCAGTGGTGAGTGGAAGATTGT
TAAGAGGCGTGTTTACGTCGATGGGGGAGGAAGGGAGGAGGAGGGAAGGG
AAGGGAGAAGATGACGAAGAGGAAGAGGAGCATGACGACGAGGAGGAGGA
GGAGGAGTGGGAGGGAGAAGAAGAGGAGGCGGAGGAGGAGGAGGGGGGAG
GGGGAGGAGGAGGCGTGGCGTTTGGCTCTCGCAGAAGAACGACGGGCCAT
GCAGTCGACTGTGAGCAACCTCCCTCTTTTGGGGAGCGAGGCCATCCTCC
CTTCCCTCCCTCCCTCCCTCCCTTCCTCGTCCTCGGCCTCGGCGCTGCGG
GCGTGGAGGAAGGAAAATTTAATTCTGCCCTGGGGTCCACTTCCTGAGAA
ATGGCGAGGGATAGGGAAGATCGATCCCTCTGTGTGGGTGCTTGGGGAGG
GAGGTGAGGAAGAGGAGGAGGAAGGGGGGGAGGGGCACGACGTTTGGTTG
GAGGAAGAGGATGGGGAGGAGGAAGAAGAGGAGGGGCGGGAGGAGAGGGA
GTTCGTGCTTGCCGGGGGGCTGAGGTCGTCGTCGTCGTCAACGCTGCTCC
TGCATGAGCAGCGGCGGCAGCAGCAGCAGCAGCAGGAGGAGGGGGAGGAG
GGGGAAGGAGAGAGACGAGGACGAGGAGGAGGAGGAGTACGTCATCCTTC
TCCCTCTACTTCCTCTTTTGCTGCTATCTCTGCTCCCTTCGCCCGTCGTC
CCGATACTGTCGAGCAGGCAGGCAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAAAGGCTGCCAGATCTAACGGCGATGGTCGGGGCGTCGCTGGAGGAGCA
GGTAAAGAGTGAATACGGTCCCATGAAATTTCGGAGTTTCTTCTTCCGAG
CGCAGCCTTCTTTCCTGTCGCCGTTTACGAGGGGCATGATGGGGAGGGAG
GGAGGGAGGGAAGGAGGGAGGGAGGAAGGGAAAGAGGAGGGGGCGAGGGC
GGTGTTGTGCGACGTGTTGAGTGTACTGGACTATCACCATGGAGGGGGAG
GAATGGGGGGAAGGCGGGGAGCGTGGACACGGGGCGTGGAGAGGGAGAAC
GAGGAGGAGGAGAAGAAGGAAGAGTGAGATGGTGTATATTGATTGTTTAA
ATACCAAGGGGAGAGGGAGGTGGGTGGAAGGGAGGAAGGAAGG
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Coding sequence (CDS) from alignment at scaffold_49:75239..76431-

>mRNA_9979 ID=mRNA_9979|Name=jgi.p|Nanoce1779_2|324389|organism=Nannochloropsis oceanica|type=CDS|length=1017bp|location=Sequence derived from alignment at scaffold_49:75239..76431- (Nannochloropsis oceanica)
ATGACGAAGAGGAAGAGGAGCATGACGACGAGGAGGAGGAGGAGGAGTGG
GAGGGAGAAGAAGAGGAGGCGGAGGAGGAGGAGGGGGGAGGGGGAGGAGG
AGGCGTGGCGTTTGGCTCTCGCAGAAGAACGACGGGCCATGCAGTCGACT
GTGAGCAACCTCCCTCTTTTGGGGAGCGAGGCCATCCTCCCTTCCCTCCC
TCCCTCCCTCCCTTCCTCGTCCTCGGCCTCGGCGCTGCGGGCGTGGAGGA
AGGAAAATTTAATTCTGCCCTGGGGTCCACTTCCTGAGAAATGGCGAGGG
ATAGGGAAGATCGATCCCTCTGTGTGGGTGCTTGGGGAGGGAGGTGAGGA
AGAGGAGGAGGAAGGGGGGGAGGGGCACGACGTTTGGTTGGAGGAAGAGG
ATGGGGAGGAGGAAGAAGAGGAGGGGCGGGAGGAGAGGGAGTTCGTGCTT
GCCGGGGGGCTGAGGTCGTCGTCGTCGTCAACGCTGCTCCTGCATGAGCA
GCGGCGGCAGCAGCAGCAGCAGCAGGAGGAGGGGGAGGAGGGGGAAGGAG
AGAGACGAGGACGAGGAGGAGGAGGAGTACGTCATCCTTCTCCCTCTACT
TCCTCTTTTGCTGCTATCTCTGCTCCCTTCGCCCGTCGTCCCGATACTGT
CGAGCAGGCAGGCAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAAGGCTGC
CAGATCTAACGGCGATGGTCGGGGCGTCGCTGGAGGAGCAGGTAAAGAGT
GAATACGGTCCCATGAAATTTCGGAGTTTCTTCTTCCGAGCGCAGCCTTC
TTTCCTGTCGCCGTTTACGAGGGGCATGATGGGGAGGGAGGGAGGGAGGG
AAGGAGGGAGGGAGGAAGGGAAAGAGGAGGGGGCGAGGGCGGTGTTGTGC
GACGTGTTGAGTGTACTGGACTATCACCATGGAGGGGGAGGAATGGGGGG
AAGGCGGGGAGCGTGGACACGGGGCGTGGAGAGGGAGAACGAGGAGGAGG
AGAAGAAGGAAGAGTGA
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Synonyms
Publications