jgi.p|Nanoce1779_2|547574, mRNA_9978 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|547574
Unique Name	mRNA_9978
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1788
Alignment location	scaffold_49:70304..72633 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	547660
Track	FilteredModels2
ProteinId	547574

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_49	supercontig	scaffold_49:70304..72633 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|547574	gene_9978	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|547574	mRNA_9978-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9978	CDS_9978	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_49:70304..72633+
coding sequence from alignment at scaffold_49:70304..72633+

mRNA sequence

>mRNA_9978 ID=mRNA_9978|Name=jgi.p|Nanoce1779_2|547574|organism=Nannochloropsis oceanica|type=mRNA|length=1788bp
AGCCAAACCATGTCGGGCCGGGACTCCCAGTACGACCACCACATCACCAT
CTTCTCGCCGCAAGGTCGTTTATATCAGATTGAGTATGCATTCAAGGCAG
CGAACAGCGATGGGCTCACATCGGTAGCCGTGCGGGGGAAAGACTGTGTC
GCCGTCGTCACGCAGAAGAAGGTGCCTGACCGTTTGATTGATCCGTCCTC
TGTCTCGAACATTTACCAAATCACGGACAAAGTCGGCGCAGTCATGACAG
GCATGACGACAGATAGCCGGGCACAGGTCACGCGTCTGCGCTCAGAGGCT
CACGAGTTCCGATTTAAGTATGGCTACGACATTCCAGTTCACGTGCTTGC
GAAGCGGATTGCGGACATTGCCCAGGTGTACACTCAACAAGCCTCCATGC
GCGCCCTGGCCACCGTGTGCATGCTCGTGGGCGTGGACGATGAGCGCGGA
CCCCAGCTGTACAAGGTTGATCCGGCGGGGCACTTTTTCCCCTTCAAGGC
GACTGCTGCGGGCGTGAAGCAAGACGAGGCTATCAATTGGTTGGAGAAGA
AGGTTTCGGAGATGAGCACGATGGACACAGACAGTACCGTGCAGATGGCG
ATTATGGCCCTGCAGTCCGTCTTGTCGACTGATTTCCGGGGGACAGAGAT
CGAGGTGGGGGTGGTAGAGGGGGTGAACGGGTTCTTTCACACTTTGAAAG
AGGAAGAGATTGATATGCACTTGACGGCGATTACCGAGAGGGATGCGTAA
GCGTGGCAAGGGGGAGGAGAAAGAGGGAGGGAGGTTGGGGAAGGGAGGGG
GAGGTAGATAGACGGGGGGAAGACAGGGTAAAATGTAAGAGGTGGGCTGA
AGTTGATCCCACCTGTGTCTGAAGAAAGAAGAGAAGAAGAAGGAAAAGGG
AGGCGCTAGTTCCACGATTGACGTTGCTGGTTGAACTTTCCCCCTCCCTA
CTTTTCTCTGGGAAGAAATAGAGGAGCCAGCACGGAGCACCAGTGCTCAA
GGCTTTAATTTTCGTCAATCTCCCGATGCAAAAGGGTCAATTTATCATAT
CGAGGTGTGGTGTATTTGTATGCATCTTGAGTCACACTCTGTCGAAGGTA
CGGCTGTCACTTTTTTGTCGCTCAGCTTGCGCCACGCCTCCACGCGCGGC
GCACGACCTCCTCCTTCTTCCTTGCCCACTTGTGTCTCTTCCTGCTTATA
ACTCATCCACCACTAACTACCACCACGACCACACAGGTATAGTCACAAAC
ATCATTATGTCACTGAGAAGAAGTTACCGCCCGTGGTGGCTGTCTCTGCT
ACTTCTCCTCCTCCTGCCCACCGTTGCGTCGAGCTTCTTCATCCACGTGC
GGCCCCGGAGTCTCCAAGTCCCTTCCACACAGACGCACCAAGCTCCTTCC
TCAACCGGCTTAGGCCACTTCAACCTCCCCTCCCCCCCGCCCTTCCTCCT
CAGCCTCGTCCGCCGTTCCGCCCGACAGCATGAACACGGTAAGGACTGCA
ACCACGACCATGGCCCTTGTTCCTCGTCAGTTCCTGTCACTGTGATTTCG
GGTCTGCCTGGTGCAGGCAAGACGACCTTGCTTCGACACCTCTTGAGGGA
GGGAGGGGGACGAGGGCCTGAGGAAGGGCGGCGAAAGGTAGGAGTGGTGA
TGGCTCAGAGCACGGGGCTGCAGGAGCTGTTGAAAGAGATTGATGGAGAG
GAAGGAACGGAAGACGATGTGATCGTGTGCAGCACTGTGGGGGGGAGGAC
GGGAAGGAGGGAGGGAACGGGGGCGGGTCATCTGCTAG

protein sequence of jgi.p|Nanoce1779_2|547574

>mRNA_9978-protein ID=mRNA_9978-protein|Name=jgi.p|Nanoce1779_2|547574|organism=Nannochloropsis oceanica|type=polypeptide|length=254bp
MQKGQFIISRCGVFVCILSHTLSKVRLSLFCRSACATPPRAAHDLLLLPC
PLVSLPAYNSSTTNYHHDHTGIVTNIIMSLRRSYRPWWLSLLLLLLLPTV
ASSFFIHVRPRSLQVPSTQTHQAPSSTGLGHFNLPSPPPFLLSLVRRSAR
QHEHGKDCNHDHGPCSSSVPVTVISGLPGAGKTTLLRHLLREGGGRGPEE
GRRKVGVVMAQSTGLQELLKEIDGEEGTEDDVIVCSTVGGRTGRREGTGA
GHLL

mRNA from alignment at scaffold_49:70304..72633+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9978 ID=mRNA_9978|Name=jgi.p|Nanoce1779_2|547574|organism=Nannochloropsis oceanica|type=mRNA|length=2330bp|location=Sequence derived from alignment at scaffold_49:70304..72633+ (Nannochloropsis oceanica)
AGCCAAACCATGTCGGGCCGGGACTCCCAGTACGACCACCACATCACCAT
CTTCTCGCCGCAAGGTCGTTTATATCAGATTGAGTATGCATTCAAGGCAG
CGAACAGCGATGGGCTCACATCGGTAGCCGTGCGGGGGAAAGACTGTGTC
GCCGTCGTCACGCAGAAGAAGGTGCCTGACCGTTTGATTGGTACGTTGGC
CTTGCGGTCAGCAGGCTATAGTTTGATCCCTCGGGAGAGTGGGGCCTTGG
ATACCCGTGCTTGGGTGGTGATGACGACAGGATTCGCACCGACATCAGAC
GTTCACCGTCCCTTCCCTCCTCGCCGTCCTCCCCTCTCTCTCCTCCCCCC
CTCAGATCCGTCCTCTGTCTCGAACATTTACCAAATCACGGACAAAGTCG
GCGCAGTCATGACAGGCATGACGACAGATAGCCGGGCACAGGTCACGCGT
CTGCGCTCAGAGGCTCACGAGTTCCGATTTAAGTATGGCTACGACATTCC
AGTTCACGTGCTTGCGAAGCGGATTGCGGACATTGCCCAGGTAACCTCCC
CCCCTTCCTCCCCCCCTCCCTTTCTTCGCCCGTTCATCTCTCTCTGTGCC
CTGAATCGTCCGCCCGCGGTGTGCACAGGTATACTCATCGGCCATCCCCC
CATCCCTCCCTCCCTTCCTCCCTTCCCTCCCCCCTTAGGTGTACACTCAA
CAAGCCTCCATGCGCGCCCTGGCCACCGTGTGCATGCTCGTGGGCGTGGA
CGATGAGCGCGGACCCCAGCTGTACAAGGTTGATCCGGCGGGGCACTTTT
TCCCCTTCAAGGTAAGGAGAGATCTGAAAGGAGGGAGGGAGGGAGGGAAG
GAGAGAGGCAGAGAGCGTCCGAATAAAGCGGAACAGCCCAGCTGACGCTC
CTCCCTCTTCCTTCCTCTTACCTTCCATCTTCCTTAAATAGGCGACTGCT
GCGGGCGTGAAGCAAGACGAGGCTATCAATTGGTTGGAGAAGAAGGTTTC
GGAGATGAGCACGATGGACACAGACAGTACCGTGCAGATGGCGATTATGG
CCCTGCAGTCCGTCTTGTCGACTGATTTCCGGGGGACAGAGATCGAGGTG
GGGGTGGTAGAGGGGGTGAACGGGTTCTTTCACACTTTGAAAGAGGAAGA
GATTGATATGCACTTGACGGCGATTACCGAGAGGGATGCGTAAGCGTGGC
AAGGGGGAGGAGAAAGAGGGAGGGAGGTTGGGGAAGGGAGGGGGAGGTAG
ATAGACGGGGGGAAGACAGGGTAAAATGTAAGAGGTGGGCTGAAGTTGAT
CCCACCTGTGTCTGAAGAAAGAAGAGAAGAAGAAGGAAAAGGGAGGCGCT
AGTTCCACGATTGACGTTGCTGGTTGAACTTTCCCCCTCCCTACTTTTCT
CTGGGAAGAAATAGAGGAGCCAGCACGGAGCACCAGTGCTCAAGGCTTTA
ATTTTCGTCAATCTCCCGATGCAAAAGGGTCAATTTATCATATCGAGGTG
TGGTGTATTTGTATGCATCTTGAGTCACACTCTGTCGAAGGTACGGCTGT
CACTTTTTTGTCGCTCAGCTTGCGCCACGCCTCCACGCGCGGCGCACGAC
CTCCTCCTTCTTCCTTGCCCACTTGTGTCTCTTCCTGCTTATAACTCATC
CACCACTAACTACCACCACGACCACACAGGTATAGTCACAAACATCATTA
TGTCACTGAGAAGAAGTTACCGCCCGTGGTGGCTGTCTCTGCTACTTCTC
CTCCTCCTGCCCACCGTTGCGTCGAGCTTCTTCATCCACGTGCGGCCCCG
GAGTCTCCAAGTCCCTTCCACACAGACGCACCAAGGTGAATCTAAACTCA
CCCAGATATGTTTATTGACTTTATTCCTCCCCTCCACCCCTATTGTCTCT
CTCACACATCTGCCATCCTCAATACACCCTCCAGCTCCTTCCTCAACCGG
CTTAGGCCACTTCAACCTCCCCTCCCCCCCGCCCTTCCTCCTCAGCCTCG
TCCGCCGTTCCGCCCGACAGCATGAACACGGTAAGGACTGCAACCACGAC
CATGGCCCTTGTTCCTCGTCAGTTCCTGTCACTGTGATTTCGGGTCTGCC
TGGTGCAGGCAAGACGACCTTGCTTCGACACCTCTTGAGGGAGGGAGGGG
GACGAGGGCCTGAGGAAGGGCGGCGAAAGGTAGGAGTGGTGATGGCTCAG
AGCACGGGGCTGCAGGAGCTGTTGAAAGAGATTGATGGAGAGGAAGGAAC
GGAAGACGATGTGATCGTGTGCAGCACTGTGGGGGGGAGGACGGGAAGGA
GGGAGGGAACGGGGGCGGGTCATCTGCTAG

Coding sequence (CDS) from alignment at scaffold_49:70304..72633+

>mRNA_9978 ID=mRNA_9978|Name=jgi.p|Nanoce1779_2|547574|organism=Nannochloropsis oceanica|type=CDS|length=1524bp|location=Sequence derived from alignment at scaffold_49:70304..72633+ (Nannochloropsis oceanica)
ATGCAAAAGGGTCAATTTATCATATCGAGGTGTGGTGTATTTGTATGCAT
CTTGAGTCACACTCTGTCGAAGGTACGGCTGTCACTTTTTTGTCGCTCAG
CTTGCGCCACGCCTCCACGCGCGGCGCACGACCTCCTCCTTCTTCCTTGC
CCACTTGTGTCTCTTCCTGCTTATAACTCATCCACCACTAACTACCACCA
CGACCACACAGGTATAGTCACAAACATCATTATGTCACTGAGAAGAAGTT
ACCGCCCGTGGTGGCTGTCTCTGCTACTTCTCCTCCTCCTGCCCACCGTT
GCGTCGAGCTTCTTCATCCACGTGCGGCCCCGGAGTCTCCAAGTCCCTTC
CACACAGACGCACCAAGCTCCTTCCTCAACCGGCTTAGGCCACTTCAACC
TCCCCTCCCCCCCGCCCTTCCTCCTCAGCCTCGTCCGCCGTTCCGCCCGA
CAGCATGAACACGGTAAGGACTGCAACCACGACCATGGCCCTTGTTCCTC
GTCAGTTCCTGTCACTGTGATTTCGGGTCTGCCTGGTGCAGGCAAGACGA
CCTTGCTTCGACACCTCTTGAGGGAGGGAGGGGGACGAGGGCCTGAGGAA
GGGCGGCGAAAGGTAGGAGTGGTGATGGCTCAGAGCACGGGGCTGCAGGA
GCTGTTGAAAGAGATTGATGGAGAGGAAGGAACGGAAGACGATGTGATCG
TGTGCAGCACTGTGGGGGGGAGGACGGGAAGGAGGGAGGGAACGGGGGCG
GGTCATCTGCTAATGCAAAAGGGTCAATTTATCATATCGAGGTGTGGTGT
ATTTGTATGCATCTTGAGTCACACTCTGTCGAAGGTACGGCTGTCACTTT
TTTGTCGCTCAGCTTGCGCCACGCCTCCACGCGCGGCGCACGACCTCCTC
CTTCTTCCTTGCCCACTTGTGTCTCTTCCTGCTTATAACTCATCCACCAC
TAACTACCACCACGACCACACAGGTATAGTCACAAACATCATTATGTCAC
TGAGAAGAAGTTACCGCCCGTGGTGGCTGTCTCTGCTACTTCTCCTCCTC
CTGCCCACCGTTGCGTCGAGCTTCTTCATCCACGTGCGGCCCCGGAGTCT
CCAAGTCCCTTCCACACAGACGCACCAAGCTCCTTCCTCAACCGGCTTAG
GCCACTTCAACCTCCCCTCCCCCCCGCCCTTCCTCCTCAGCCTCGTCCGC
CGTTCCGCCCGACAGCATGAACACGGTAAGGACTGCAACCACGACCATGG
CCCTTGTTCCTCGTCAGTTCCTGTCACTGTGATTTCGGGTCTGCCTGGTG
CAGGCAAGACGACCTTGCTTCGACACCTCTTGAGGGAGGGAGGGGGACGA
GGGCCTGAGGAAGGGCGGCGAAAGGTAGGAGTGGTGATGGCTCAGAGCAC
GGGGCTGCAGGAGCTGTTGAAAGAGATTGATGGAGAGGAAGGAACGGAAG
ACGATGTGATCGTGTGCAGCACTGTGGGGGGGAGGACGGGAAGGAGGGAG
GGAACGGGGGCGGGTCATCTGCTA

Synonyms

Publications