jgi.p|Nanoce1779_2|533892, mRNA_9977 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|533892
Unique NamemRNA_9977
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length741
Alignment locationscaffold_49:70313..71496 +

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Properties
Property NameValue
TranscriptId533978
TrackFilteredModels2
ProteinId533892
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:70313..71496 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|533892gene_9977Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|533892mRNA_9977-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9977CDS_9977Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9977 ID=mRNA_9977|Name=jgi.p|Nanoce1779_2|533892|organism=Nannochloropsis oceanica|type=mRNA|length=741bp
ATGTCGGGCCGGGACTCCCAGTACGACCACCACATCACCATCTTCTCGCC
GCAAGGTCGTTTATATCAGATTGAGTATGCATTCAAGGCAGCGAACAGCG
ATGGGCTCACATCGGTAGCCGTGCGGGGGAAAGACTGTGTCGCCGTCGTC
ACGCAGAAGAAGGTGCCTGACCGTTTGATTGATCCGTCCTCTGTCTCGAA
CATTTACCAAATCACGGACAAAGTCGGCGCAGTCATGACAGGCATGACGA
CAGATAGCCGGGCACAGGTCACGCGTCTGCGCTCAGAGGCTCACGAGTTC
CGATTTAAGTATGGCTACGACATTCCAGTTCACGTGCTTGCGAAGCGGAT
TGCGGACATTGCCCAGGTGTACACTCAACAAGCCTCCATGCGCGCCCTGG
CCACCGTGTGCATGCTCGTGGGCGTGGACGATGAGCGCGGACCCCAGCTG
TACAAGGTTGATCCGGCGGGGCACTTTTTCCCCTTCAAGGCGACTGCTGC
GGGCGTGAAGCAAGACGAGGCTATCAATTGGTTGGAGAAGAAGGTTTCGG
AGATGAGCACGATGGACACAGACAGTACCGTGCAGATGGCGATTATGGCC
CTGCAGTCCGTCTTGTCGACTGATTTCCGGGGGACAGAGATCGAGGTGGG
GGTGGTAGAGGGGGTGAACGGGTTCTTTCACACTTTGAAAGAGGAAGAGA
TTGATATGCACTTGACGGCGATTACCGAGAGGGATGCGTAA
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protein sequence of jgi.p|Nanoce1779_2|533892

>mRNA_9977-protein ID=mRNA_9977-protein|Name=jgi.p|Nanoce1779_2|533892|organism=Nannochloropsis oceanica|type=polypeptide|length=247bp
MSGRDSQYDHHITIFSPQGRLYQIEYAFKAANSDGLTSVAVRGKDCVAVV
TQKKVPDRLIDPSSVSNIYQITDKVGAVMTGMTTDSRAQVTRLRSEAHEF
RFKYGYDIPVHVLAKRIADIAQVYTQQASMRALATVCMLVGVDDERGPQL
YKVDPAGHFFPFKATAAGVKQDEAINWLEKKVSEMSTMDTDSTVQMAIMA
LQSVLSTDFRGTEIEVGVVEGVNGFFHTLKEEEIDMHLTAITERDA*
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mRNA from alignment at scaffold_49:70313..71496+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9977 ID=mRNA_9977|Name=jgi.p|Nanoce1779_2|533892|organism=Nannochloropsis oceanica|type=mRNA|length=1184bp|location=Sequence derived from alignment at scaffold_49:70313..71496+ (Nannochloropsis oceanica)
ATGTCGGGCCGGGACTCCCAGTACGACCACCACATCACCATCTTCTCGCC
GCAAGGTCGTTTATATCAGATTGAGTATGCATTCAAGGCAGCGAACAGCG
ATGGGCTCACATCGGTAGCCGTGCGGGGGAAAGACTGTGTCGCCGTCGTC
ACGCAGAAGAAGGTGCCTGACCGTTTGATTGGTACGTTGGCCTTGCGGTC
AGCAGGCTATAGTTTGATCCCTCGGGAGAGTGGGGCCTTGGATACCCGTG
CTTGGGTGGTGATGACGACAGGATTCGCACCGACATCAGACGTTCACCGT
CCCTTCCCTCCTCGCCGTCCTCCCCTCTCTCTCCTCCCCCCCTCAGATCC
GTCCTCTGTCTCGAACATTTACCAAATCACGGACAAAGTCGGCGCAGTCA
TGACAGGCATGACGACAGATAGCCGGGCACAGGTCACGCGTCTGCGCTCA
GAGGCTCACGAGTTCCGATTTAAGTATGGCTACGACATTCCAGTTCACGT
GCTTGCGAAGCGGATTGCGGACATTGCCCAGGTAACCTCCCCCCCTTCCT
CCCCCCCTCCCTTTCTTCGCCCGTTCATCTCTCTCTGTGCCCTGAATCGT
CCGCCCGCGGTGTGCACAGGTATACTCATCGGCCATCCCCCCATCCCTCC
CTCCCTTCCTCCCTTCCCTCCCCCCTTAGGTGTACACTCAACAAGCCTCC
ATGCGCGCCCTGGCCACCGTGTGCATGCTCGTGGGCGTGGACGATGAGCG
CGGACCCCAGCTGTACAAGGTTGATCCGGCGGGGCACTTTTTCCCCTTCA
AGGTAAGGAGAGATCTGAAAGGAGGGAGGGAGGGAGGGAAGGAGAGAGGC
AGAGAGCGTCCGAATAAAGCGGAACAGCCCAGCTGACGCTCCTCCCTCTT
CCTTCCTCTTACCTTCCATCTTCCTTAAATAGGCGACTGCTGCGGGCGTG
AAGCAAGACGAGGCTATCAATTGGTTGGAGAAGAAGGTTTCGGAGATGAG
CACGATGGACACAGACAGTACCGTGCAGATGGCGATTATGGCCCTGCAGT
CCGTCTTGTCGACTGATTTCCGGGGGACAGAGATCGAGGTGGGGGTGGTA
GAGGGGGTGAACGGGTTCTTTCACACTTTGAAAGAGGAAGAGATTGATAT
GCACTTGACGGCGATTACCGAGAGGGATGCGTAA
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Coding sequence (CDS) from alignment at scaffold_49:70313..71496+

>mRNA_9977 ID=mRNA_9977|Name=jgi.p|Nanoce1779_2|533892|organism=Nannochloropsis oceanica|type=CDS|length=2964bp|location=Sequence derived from alignment at scaffold_49:70313..71496+ (Nannochloropsis oceanica)
ATGTCGGGCCGGGACTCCCAGTACGACCACCACATCACCATCTTCTCGCC
GCAAGGTCGTTTATATCAGATTGAGTATGCATTCAAGGCAGCGAACAGCG
ATGGGCTCACATCGGTAGCCGTGCGGGGGAAAGACTGTGTCGCCGTCGTC
ACGCAGAAGAAGGTGCCTGACCGTTTGATTGATCCGTCCTCTGTCTCGAA
CATTTACCAAATCACGGACAAAGTCGGCGCAGTCATGACAGGCATGACGA
CAGATAGCCGGGCACAGGTCACGCGTCTGCGCTCAGAGGCTCACGAGTTC
CGATTTAAGTATGGCTACGACATTCCAGTTCACGTGCTTGCGAAGCGGAT
TGCGGACATTGCCCAGGTGTACACTCAACAAGCCTCCATGCGCGCCCTGG
CCACCGTGTGCATGCTCGTGGGCGTGGACGATGAGCGCGGACCCCAGCTG
TACAAGGTTGATCCGGCGGGGCACTTTTTCCCCTTCAAGGCGACTGCTGC
GGGCGTGAAGCAAGACGAGGCTATCAATTGGTTGGAGAAGAAGGTTTCGG
AGATGAGCACGATGGACACAGACAGTACCGTGCAGATGGCGATTATGGCC
CTGCAGTCCGTCTTGTCGACTGATTTCCGGGGGACAGAGATCGAGGTGGG
GGTGGTAGAGGGGGTGAACGGGTTCTTTCACACTTTGAAAGAGGAAGAGA
TTGATATGCACTTGACGGCGATTACCGAGAGGGATGCGTAAATGTCGGGC
CGGGACTCCCAGTACGACCACCACATCACCATCTTCTCGCCGCAAGGTCG
TTTATATCAGATTGAGTATGCATTCAAGGCAGCGAACAGCGATGGGCTCA
CATCGGTAGCCGTGCGGGGGAAAGACTGTGTCGCCGTCGTCACGCAGAAG
AAGGTGCCTGACCGTTTGATTGATCCGTCCTCTGTCTCGAACATTTACCA
AATCACGGACAAAGTCGGCGCAGTCATGACAGGCATGACGACAGATAGCC
GGGCACAGGTCACGCGTCTGCGCTCAGAGGCTCACGAGTTCCGATTTAAG
TATGGCTACGACATTCCAGTTCACGTGCTTGCGAAGCGGATTGCGGACAT
TGCCCAGGTGTACACTCAACAAGCCTCCATGCGCGCCCTGGCCACCGTGT
GCATGCTCGTGGGCGTGGACGATGAGCGCGGACCCCAGCTGTACAAGGTT
GATCCGGCGGGGCACTTTTTCCCCTTCAAGGCGACTGCTGCGGGCGTGAA
GCAAGACGAGGCTATCAATTGGTTGGAGAAGAAGGTTTCGGAGATGAGCA
CGATGGACACAGACAGTACCGTGCAGATGGCGATTATGGCCCTGCAGTCC
GTCTTGTCGACTGATTTCCGGGGGACAGAGATCGAGGTGGGGGTGGTAGA
GGGGGTGAACGGGTTCTTTCACACTTTGAAAGAGGAAGAGATTGATATGC
ACTTGACGGCGATTACCGAGAGGGATGCGTAAATGTCGGGCCGGGACTCC
CAGTACGACCACCACATCACCATCTTCTCGCCGCAAGGTCGTTTATATCA
GATTGAGTATGCATTCAAGGCAGCGAACAGCGATGGGCTCACATCGGTAG
CCGTGCGGGGGAAAGACTGTGTCGCCGTCGTCACGCAGAAGAAGGTGCCT
GACCGTTTGATTGATCCGTCCTCTGTCTCGAACATTTACCAAATCACGGA
CAAAGTCGGCGCAGTCATGACAGGCATGACGACAGATAGCCGGGCACAGG
TCACGCGTCTGCGCTCAGAGGCTCACGAGTTCCGATTTAAGTATGGCTAC
GACATTCCAGTTCACGTGCTTGCGAAGCGGATTGCGGACATTGCCCAGGT
GTACACTCAACAAGCCTCCATGCGCGCCCTGGCCACCGTGTGCATGCTCG
TGGGCGTGGACGATGAGCGCGGACCCCAGCTGTACAAGGTTGATCCGGCG
GGGCACTTTTTCCCCTTCAAGGCGACTGCTGCGGGCGTGAAGCAAGACGA
GGCTATCAATTGGTTGGAGAAGAAGGTTTCGGAGATGAGCACGATGGACA
CAGACAGTACCGTGCAGATGGCGATTATGGCCCTGCAGTCCGTCTTGTCG
ACTGATTTCCGGGGGACAGAGATCGAGGTGGGGGTGGTAGAGGGGGTGAA
CGGGTTCTTTCACACTTTGAAAGAGGAAGAGATTGATATGCACTTGACGG
CGATTACCGAGAGGGATGCGTAAATGTCGGGCCGGGACTCCCAGTACGAC
CACCACATCACCATCTTCTCGCCGCAAGGTCGTTTATATCAGATTGAGTA
TGCATTCAAGGCAGCGAACAGCGATGGGCTCACATCGGTAGCCGTGCGGG
GGAAAGACTGTGTCGCCGTCGTCACGCAGAAGAAGGTGCCTGACCGTTTG
ATTGATCCGTCCTCTGTCTCGAACATTTACCAAATCACGGACAAAGTCGG
CGCAGTCATGACAGGCATGACGACAGATAGCCGGGCACAGGTCACGCGTC
TGCGCTCAGAGGCTCACGAGTTCCGATTTAAGTATGGCTACGACATTCCA
GTTCACGTGCTTGCGAAGCGGATTGCGGACATTGCCCAGGTGTACACTCA
ACAAGCCTCCATGCGCGCCCTGGCCACCGTGTGCATGCTCGTGGGCGTGG
ACGATGAGCGCGGACCCCAGCTGTACAAGGTTGATCCGGCGGGGCACTTT
TTCCCCTTCAAGGCGACTGCTGCGGGCGTGAAGCAAGACGAGGCTATCAA
TTGGTTGGAGAAGAAGGTTTCGGAGATGAGCACGATGGACACAGACAGTA
CCGTGCAGATGGCGATTATGGCCCTGCAGTCCGTCTTGTCGACTGATTTC
CGGGGGACAGAGATCGAGGTGGGGGTGGTAGAGGGGGTGAACGGGTTCTT
TCACACTTTGAAAGAGGAAGAGATTGATATGCACTTGACGGCGATTACCG
AGAGGGATGCGTAA
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Synonyms
Publications