jgi.p|Nanoce1779_2|610313, mRNA_9976 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|610313
Unique Name	mRNA_9976
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1613
Alignment location	scaffold_49:67710..69654 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	610399
Track	FilteredModels2
ProteinId	610313

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_49	supercontig	scaffold_49:67710..69654 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|610313	gene_9976	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|610313	mRNA_9976-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9976	CDS_9976	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_49:67710..69654+
coding sequence from alignment at scaffold_49:67710..69654+

mRNA sequence

>mRNA_9976 ID=mRNA_9976|Name=jgi.p|Nanoce1779_2|610313|organism=Nannochloropsis oceanica|type=mRNA|length=1613bp
ACAGCAGCCCCGTCCCACCCGTACACATGGAGCTTCCCCCGTGGGAGGTA
TTACTCACACTTCTCCAAACCGGCTTAATCCTGCTGCTTTTCCTCGTCGT
TCGCCAAGTTCTCGCCTGGAAGGGCCGCAAGCACTTCCCTCCCTTGACCT
GTGGTAGCGTTCTCCTCACAGGCACCAGCAGTGGAATCGGTCGCACCGCA
GCCGTGTACCTGGCCCAGCGTGGGTTCACAGTGTTGGCTGGGGTACGCAA
GGAGAGCGATGCACAGGCGTTGCGAGAGATTGGGGTGCCCGGGATCCACC
CTGTGATTCTTGATGTGGCCAAGCTGGACAGCGTGCAGGCTTGCCATGCC
CACGTCCTCTCGCTCCTCTCCACCAAGACCATCCCCCCCCTCATGGCCGT
CATTAACAACGCTGGACTCCTTCAAGATGCCACGGTAGAATTCCACGATA
TGGACATGATGCGGCACATGTTCGACGTTAACTACTTTGGGCTCGTCACC
GTCTCCTCCGTCTTCCTACCCCTCCTCCGTGGCGCGTCTTCCTCCTCCTC
CTCCACCTCCGCCTCTTTCCCAAAAGGACGACTCATTAATATCGGCTCCG
TCGCTGGCAAGGTGTCCTTTCCTCGCTACGGGGCCTATGCCGCAAGCAAG
CACGCAGTGGAAGCCATCACCGACACGCTCCGCGCCGAGCTAACCCCAGC
CGGAGTGAGTGTCTCCTTGATCCAGCCGGGCTTCTGTCGAACGGAGTTGT
TTGTCCGCGGAGTGGCTCAACCGGAGCTACAGCAGCAGCAACAGCAGTCG
CATGTCAAGAATGATACGTCCGTGTCTCCTGCAGCCAAGAAAGCCTATCC
GTTTTTCTACACTCAAAAATTTGAAAAGAAAAACGCCGGACCGATGGAAA
ACGGCTCGGACCCTGTGGTGGTCTGTCAGGCCATGCACCATGCTCTGACC
AGCGCGTACCCCAAGACACGTTATCCCGTCGCGAAGATAAACCGAGCGAA
AGTGGCGCTGGTGTTTCTCGTGCGTCAGTTGCTTCCCGATCGCGTTTTTG
ATAAGAGCTTTCTGCTGAACGTATAAACGAGAGTGAATGTGGGAGGGAAG
GAGGGCAGGAGTGACGGAGAGGAAGGAGAGGGATGATGAGCCTCCCTTCC
GAACAATTTGAAATACGTAGATTAATTGGAGAACATTTGTGGCTGATGGA
TCGAAGGAGATAGGCATTTTGTGCGGTGTTTTGTTTCTTGAATATCGCCG
CTATGAGAGACGCCGTGATGGAGAAGGGACGCAAGTGCTTGGCACAGGAC
GGAGACACGACCATACCAGCTTATCTCGTGGAGGGAAGAGAGCGGGGGAG
AGGGTGGTGGTGCCGGTGATGGTGATGGCCAGTGTAGAGAGGGGGGAAGA
TATATTAATAGAATGAGAACAAGAATAAGTGTGAGATATAAATGAATAAT
GAAGAGAATAGAAGAAGAAAAGAGCGCGAGAGCGCGAGAGTGAGGGAAAG
AAGTAGAGACGTAATTGCCAGCCAGGTCAAGAAGAAGAGAAAAAAATTTG
AATGCAGATGCAGAAGTACGAGCAAACAACCAGAAACTCCAATTCTTACT
TTTAGAAAATTGG

protein sequence of jgi.p|Nanoce1779_2|610313

>mRNA_9976-protein ID=mRNA_9976-protein|Name=jgi.p|Nanoce1779_2|610313|organism=Nannochloropsis oceanica|type=polypeptide|length=350bp
MELPPWEVLLTLLQTGLILLLFLVVRQVLAWKGRKHFPPLTCGSVLLTGT
SSGIGRTAAVYLAQRGFTVLAGVRKESDAQALREIGVPGIHPVILDVAKL
DSVQACHAHVLSLLSTKTIPPLMAVINNAGLLQDATVEFHDMDMMRHMFD
VNYFGLVTVSSVFLPLLRGASSSSSSTSASFPKGRLINIGSVAGKVSFPR
YGAYAASKHAVEAITDTLRAELTPAGVSVSLIQPGFCRTELFVRGVAQPE
LQQQQQQSHVKNDTSVSPAAKKAYPFFYTQKFEKKNAGPMENGSDPVVVC
QAMHHALTSAYPKTRYPVAKINRAKVALVFLVRQLLPDRVFDKSFLLNV*

mRNA from alignment at scaffold_49:67710..69654+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9976 ID=mRNA_9976|Name=jgi.p|Nanoce1779_2|610313|organism=Nannochloropsis oceanica|type=mRNA|length=1945bp|location=Sequence derived from alignment at scaffold_49:67710..69654+ (Nannochloropsis oceanica)
ACAGCAGCCCCGTCCCACCCGTACACATGGAGCTTCCCCCGTGGGAGGTA
TTACTCACACTTCTCCAAACCGGCTTAATCCTGCTGCTTTTCCTCGTCGT
TCGCCAAGTTCTCGCCTGGAAGGGCCGCAAGCACTTCCCTCCCTTGACCT
GTGGTAGCGTTCTCCTCACAGGCACCAGCAGTGGAATCGGTCGCACCGCA
GCCGTGTACCTGGCCCAGCGTGGGTTCACAGTGTTGGCTGGGGTACGCAA
GGAGAGCGATGCACAGGCGTTGCGAGAGATTGGGGTGCCCGGGATCCACC
CTGTGATTCTTGATGTGGCCAAGCTGGACAGCGTGCAGGCTTGCCATGCC
CACGTCCTCTCGCTCCTCTCCACCAAGACCATCCCCCCCCTCATGGCCGT
CATTAACAACGCTGGACTCCTTCAAGATGCCACGGTAGAATTCCACGATA
TGGACATGATGCGGCACATGTTCGACGTTAACTACTTTGGGCTCGTCACC
GTCTCCTCCGTCTTCCTACCCCTCCTCCGTGGCGCGTCTTCCTCCTCCTC
CTCCACCTCCGCCTCTTTCCCAAAAGGACGACTCATTAATATCGGCTCCG
TCGCTGGCAAGGTGTCCTTTCCTCGCTACGGGGCCTATGCCGCAAGCAAG
CACGCAGTGGAAGCCATCACCGACACGCTCCGCGCCGAGCTAACCCCAGC
CGGAGTGAGTGTCTCCTTGATCCAGCCGGGCTTCTGTCGAACGGAGTTGT
TTGTCCGCGGAGTGGCTCAACCGGAGCTACAGCAGCAGCAACAGCAGTCG
CATGTCAAGAATGATACGGTGAGTGAGTGATTGATGCGTGAGGGAGGAAG
GAAGGAGGAGGAGGAGGAGGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGGGAAAAGCAGAGCAGCAAATAAGTTGACAACC
CCCTCCGCCCTCCCTCCCTCCACGCTTCCCTCCCTCGCTTAGTCCGTGTC
TCCTGCAGCCAAGAAAGCCTATCCGTTTTTCTACACTCAAAAATTTGAAA
AGAAAAACGCCGGACCGATGGAAAACGGCTCGGACCCTGTGGTGGTCTGT
CAGGCAGGAAGGGGGGGGTGAGGGAAGGGAGGGAGCGAGGAGGGAGCGGG
GAGAGGTGTTTTTAATGTACTTGCATTTCACTTCTATCTCCACCCTTCCA
CGGCTACAACCTGTGGAGCTGAACCTCCTCCTATCCTCTCATCCCTCCCT
CCTTCCCTCAGGCCATGCACCATGCTCTGACCAGCGCGTACCCCAAGACA
CGTTATCCCGTCGCGAAGATAAACCGAGCGAAAGTGGCGCTGGTGTTTCT
CGTGCGTCAGTTGCTTCCCGATCGCGTTTTTGATAAGAGCTTTCTGCTGA
ACGTATAAACGAGAGTGAATGTGGGAGGGAAGGAGGGCAGGAGTGACGGA
GAGGAAGGAGAGGGATGATGAGCCTCCCTTCCGAACAATTTGAAATACGT
AGATTAATTGGAGAACATTTGTGGCTGATGGATCGAAGGAGATAGGCATT
TTGTGCGGTGTTTTGTTTCTTGAATATCGCCGCTATGAGAGACGCCGTGA
TGGAGAAGGGACGCAAGTGCTTGGCACAGGACGGAGACACGACCATACCA
GCTTATCTCGTGGAGGGAAGAGAGCGGGGGAGAGGGTGGTGGTGCCGGTG
ATGGTGATGGCCAGTGTAGAGAGGGGGGAAGATATATTAATAGAATGAGA
ACAAGAATAAGTGTGAGATATAAATGAATAATGAAGAGAATAGAAGAAGA
AAAGAGCGCGAGAGCGCGAGAGTGAGGGAAAGAAGTAGAGACGTAATTGC
CAGCCAGGTCAAGAAGAAGAGAAAAAAATTTGAATGCAGATGCAGAAGTA
CGAGCAAACAACCAGAAACTCCAATTCTTACTTTTAGAAAATTGG

Coding sequence (CDS) from alignment at scaffold_49:67710..69654+

>mRNA_9976 ID=mRNA_9976|Name=jgi.p|Nanoce1779_2|610313|organism=Nannochloropsis oceanica|type=CDS|length=3150bp|location=Sequence derived from alignment at scaffold_49:67710..69654+ (Nannochloropsis oceanica)
ATGGAGCTTCCCCCGTGGGAGGTATTACTCACACTTCTCCAAACCGGCTT
AATCCTGCTGCTTTTCCTCGTCGTTCGCCAAGTTCTCGCCTGGAAGGGCC
GCAAGCACTTCCCTCCCTTGACCTGTGGTAGCGTTCTCCTCACAGGCACC
AGCAGTGGAATCGGTCGCACCGCAGCCGTGTACCTGGCCCAGCGTGGGTT
CACAGTGTTGGCTGGGGTACGCAAGGAGAGCGATGCACAGGCGTTGCGAG
AGATTGGGGTGCCCGGGATCCACCCTGTGATTCTTGATGTGGCCAAGCTG
GACAGCGTGCAGGCTTGCCATGCCCACGTCCTCTCGCTCCTCTCCACCAA
GACCATCCCCCCCCTCATGGCCGTCATTAACAACGCTGGACTCCTTCAAG
ATGCCACGGTAGAATTCCACGATATGGACATGATGCGGCACATGTTCGAC
GTTAACTACTTTGGGCTCGTCACCGTCTCCTCCGTCTTCCTACCCCTCCT
CCGTGGCGCGTCTTCCTCCTCCTCCTCCACCTCCGCCTCTTTCCCAAAAG
GACGACTCATTAATATCGGCTCCGTCGCTGGCAAGGTGTCCTTTCCTCGC
TACGGGGCCTATGCCGCAAGCAAGCACGCAGTGGAAGCCATCACCGACAC
GCTCCGCGCCGAGCTAACCCCAGCCGGAGTGAGTGTCTCCTTGATCCAGC
CGGGCTTCTGTCGAACGGAGTTGTTTGTCCGCGGAGTGGCTCAACCGGAG
CTACAGCAGCAGCAACAGCAGTCGCATGTCAAGAATGATACGTCCGTGTC
TCCTGCAGCCAAGAAAGCCTATCCGTTTTTCTACACTCAAAAATTTGAAA
AGAAAAACGCCGGACCGATGGAAAACGGCTCGGACCCTGTGGTGGTCTGT
CAGGCCATGCACCATGCTCTGACCAGCGCGTACCCCAAGACACGTTATCC
CGTCGCGAAGATAAACCGAGCGAAAGTGGCGCTGGTGTTTCTCGTGCGTC
AGTTGCTTCCCGATCGCGTTTTTGATAAGAGCTTTCTGCTGAACGTATAA
ATGGAGCTTCCCCCGTGGGAGGTATTACTCACACTTCTCCAAACCGGCTT
AATCCTGCTGCTTTTCCTCGTCGTTCGCCAAGTTCTCGCCTGGAAGGGCC
GCAAGCACTTCCCTCCCTTGACCTGTGGTAGCGTTCTCCTCACAGGCACC
AGCAGTGGAATCGGTCGCACCGCAGCCGTGTACCTGGCCCAGCGTGGGTT
CACAGTGTTGGCTGGGGTACGCAAGGAGAGCGATGCACAGGCGTTGCGAG
AGATTGGGGTGCCCGGGATCCACCCTGTGATTCTTGATGTGGCCAAGCTG
GACAGCGTGCAGGCTTGCCATGCCCACGTCCTCTCGCTCCTCTCCACCAA
GACCATCCCCCCCCTCATGGCCGTCATTAACAACGCTGGACTCCTTCAAG
ATGCCACGGTAGAATTCCACGATATGGACATGATGCGGCACATGTTCGAC
GTTAACTACTTTGGGCTCGTCACCGTCTCCTCCGTCTTCCTACCCCTCCT
CCGTGGCGCGTCTTCCTCCTCCTCCTCCACCTCCGCCTCTTTCCCAAAAG
GACGACTCATTAATATCGGCTCCGTCGCTGGCAAGGTGTCCTTTCCTCGC
TACGGGGCCTATGCCGCAAGCAAGCACGCAGTGGAAGCCATCACCGACAC
GCTCCGCGCCGAGCTAACCCCAGCCGGAGTGAGTGTCTCCTTGATCCAGC
CGGGCTTCTGTCGAACGGAGTTGTTTGTCCGCGGAGTGGCTCAACCGGAG
CTACAGCAGCAGCAACAGCAGTCGCATGTCAAGAATGATACGTCCGTGTC
TCCTGCAGCCAAGAAAGCCTATCCGTTTTTCTACACTCAAAAATTTGAAA
AGAAAAACGCCGGACCGATGGAAAACGGCTCGGACCCTGTGGTGGTCTGT
CAGGCCATGCACCATGCTCTGACCAGCGCGTACCCCAAGACACGTTATCC
CGTCGCGAAGATAAACCGAGCGAAAGTGGCGCTGGTGTTTCTCGTGCGTC
AGTTGCTTCCCGATCGCGTTTTTGATAAGAGCTTTCTGCTGAACGTATAA
ATGGAGCTTCCCCCGTGGGAGGTATTACTCACACTTCTCCAAACCGGCTT
AATCCTGCTGCTTTTCCTCGTCGTTCGCCAAGTTCTCGCCTGGAAGGGCC
GCAAGCACTTCCCTCCCTTGACCTGTGGTAGCGTTCTCCTCACAGGCACC
AGCAGTGGAATCGGTCGCACCGCAGCCGTGTACCTGGCCCAGCGTGGGTT
CACAGTGTTGGCTGGGGTACGCAAGGAGAGCGATGCACAGGCGTTGCGAG
AGATTGGGGTGCCCGGGATCCACCCTGTGATTCTTGATGTGGCCAAGCTG
GACAGCGTGCAGGCTTGCCATGCCCACGTCCTCTCGCTCCTCTCCACCAA
GACCATCCCCCCCCTCATGGCCGTCATTAACAACGCTGGACTCCTTCAAG
ATGCCACGGTAGAATTCCACGATATGGACATGATGCGGCACATGTTCGAC
GTTAACTACTTTGGGCTCGTCACCGTCTCCTCCGTCTTCCTACCCCTCCT
CCGTGGCGCGTCTTCCTCCTCCTCCTCCACCTCCGCCTCTTTCCCAAAAG
GACGACTCATTAATATCGGCTCCGTCGCTGGCAAGGTGTCCTTTCCTCGC
TACGGGGCCTATGCCGCAAGCAAGCACGCAGTGGAAGCCATCACCGACAC
GCTCCGCGCCGAGCTAACCCCAGCCGGAGTGAGTGTCTCCTTGATCCAGC
CGGGCTTCTGTCGAACGGAGTTGTTTGTCCGCGGAGTGGCTCAACCGGAG
CTACAGCAGCAGCAACAGCAGTCGCATGTCAAGAATGATACGTCCGTGTC
TCCTGCAGCCAAGAAAGCCTATCCGTTTTTCTACACTCAAAAATTTGAAA
AGAAAAACGCCGGACCGATGGAAAACGGCTCGGACCCTGTGGTGGTCTGT
CAGGCCATGCACCATGCTCTGACCAGCGCGTACCCCAAGACACGTTATCC
CGTCGCGAAGATAAACCGAGCGAAAGTGGCGCTGGTGTTTCTCGTGCGTC
AGTTGCTTCCCGATCGCGTTTTTGATAAGAGCTTTCTGCTGAACGTATAA

Synonyms

Publications