jgi.p|Nanoce1779_2|324326, mRNA_9975 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|324326
Unique NamemRNA_9975
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length515
Alignment locationscaffold_49:66304..67063 +

Link to JBrowse

Properties
Property NameValue
TranscriptId324412
TrackFilteredModels2
ProteinId324326
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:66304..67063 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|324326gene_9975Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|324326mRNA_9975-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9975CDS_9975Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9975 ID=mRNA_9975|Name=jgi.p|Nanoce1779_2|324326|organism=Nannochloropsis oceanica|type=mRNA|length=515bp
GCCGAGACCGGACGGACGTTCACACGGGGAAGATGGCCGTGGCTCCCTTC
GACTCCCGCGCGGTGGATATGTTCCGGGTCTTGAGCACCAAGAGCCAGCA
CCCTACCCACTTCTTTCCCTTGTCCATGCTGACGGCGCAGGTCCTTCCCC
CTCCAGCCAAAGTGGCCATGGAGGTGGGTGAACGTCGGCTGGTGGCGCGC
CGACCCGTGCATGTGTATTTTGGGGATGAGCTAACCCCTGAACGGGTGGG
AAGTGAATTTGTGGCACGAAAGATGAAGGACGGCACGGCGGAAGGTTTGA
CGGAGGAGGAGCTGATGAAGAAGGCGGGGAAGGAGGGTTTTACCTATGTG
GCGGAGGGGGATGTCAAGAGGCATTATGATGTGCTTATGGGCCTGGATCT
GGTGGAGGGAGGGAGGTGAGAGGCCGTGTAGCATACATGTGATGTGGAGG
GAAGAGGAATTGTGGTCAAAGACTGGAGATGGATAGCTTCTATGTGATGT
TCGTCTTGTGCGTGT
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protein sequence of jgi.p|Nanoce1779_2|324326

>mRNA_9975-protein ID=mRNA_9975-protein|Name=jgi.p|Nanoce1779_2|324326|organism=Nannochloropsis oceanica|type=polypeptide|length=129bp
MAVAPFDSRAVDMFRVLSTKSQHPTHFFPLSMLTAQVLPPPAKVAMEVGE
RRLVARRPVHVYFGDELTPERVGSEFVARKMKDGTAEGLTEEELMKKAGK
EGFTYVAEGDVKRHYDVLMGLDLVEGGR*
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mRNA from alignment at scaffold_49:66304..67063+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9975 ID=mRNA_9975|Name=jgi.p|Nanoce1779_2|324326|organism=Nannochloropsis oceanica|type=mRNA|length=760bp|location=Sequence derived from alignment at scaffold_49:66304..67063+ (Nannochloropsis oceanica)
GCCGAGACCGGACGGACGTTCACACGGGGAAGATGGCCGTGGCTCCCTTC
GACTCCCGCGCGGTGGATATGTTCCGGGTCTTGAGCACCAAGAGCCAGCA
CCCTACCCACTTCTTTCCCTTGTCCATGCTGACGGCGCAGGTAGGGAAAG
AAGGAGGGTGGGGGGTAGGGGGGGGAAGGGAGGGAGGGGGGGAAGGAAGG
TACGGTATTCGGAACCATCAAAACCTTAGGGGGGGGGGCGCACTCGACTG
ATAATCATAATTCCAAGCCCCTCACCCTTCCCTCCCTTCCTGCCTCCCTC
CCTCTCTCCCTCCCTCCCTCTTCAGGTCCTTCCCCCTCCAGCCAAAGTGG
CCATGGAGGTGGGTGAACGTCGGCTGGTGGCGCGCCGACCCGTGCATGTG
TATTTTGGGGATGAGCTAACCCCTGAACGGGTGGGAAGTGAATTTGTGGC
ACGAAAGATGAAGGACGGCACGGCGGAAGGTTTGACGGAGGAGGAGCTGA
TGAAGAAGGCGGGGAAGGAGGGTTTTACCTATGTGGCGGAGGGGGATGTC
AAGAGGCATTATGATGTGCTTATGGGCCTGGATCTGGTGTTGGAGGAAGA
GGAGGTGTCTGTGCAGTACCATTAAATCAGGTGGGCCGCCGTGGGGAGGG
AGGGAGGGAGGTGAGAGGCCGTGTAGCATACATGTGATGTGGAGGGAAGA
GGAATTGTGGTCAAAGACTGGAGATGGATAGCTTCTATGTGATGTTCGTC
TTGTGCGTGT
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Coding sequence (CDS) from alignment at scaffold_49:66304..67063+

>mRNA_9975 ID=mRNA_9975|Name=jgi.p|Nanoce1779_2|324326|organism=Nannochloropsis oceanica|type=CDS|length=1161bp|location=Sequence derived from alignment at scaffold_49:66304..67063+ (Nannochloropsis oceanica)
ATGGCCGTGGCTCCCTTCGACTCCCGCGCGGTGGATATGTTCCGGGTCTT
GAGCACCAAGAGCCAGCACCCTACCCACTTCTTTCCCTTGTCCATGCTGA
CGGCGCAGGTCCTTCCCCCTCCAGCCAAAGTGGCCATGGAGGTGGGTGAA
CGTCGGCTGGTGGCGCGCCGACCCGTGCATGTGTATTTTGGGGATGAGCT
AACCCCTGAACGGGTGGGAAGTGAATTTGTGGCACGAAAGATGAAGGACG
GCACGGCGGAAGGTTTGACGGAGGAGGAGCTGATGAAGAAGGCGGGGAAG
GAGGGTTTTACCTATGTGGCGGAGGGGGATGTCAAGAGGCATTATGATGT
GCTTATGGGCCTGGATCTGGTGGAGGGAGGGAGGTGAATGGCCGTGGCTC
CCTTCGACTCCCGCGCGGTGGATATGTTCCGGGTCTTGAGCACCAAGAGC
CAGCACCCTACCCACTTCTTTCCCTTGTCCATGCTGACGGCGCAGGTCCT
TCCCCCTCCAGCCAAAGTGGCCATGGAGGTGGGTGAACGTCGGCTGGTGG
CGCGCCGACCCGTGCATGTGTATTTTGGGGATGAGCTAACCCCTGAACGG
GTGGGAAGTGAATTTGTGGCACGAAAGATGAAGGACGGCACGGCGGAAGG
TTTGACGGAGGAGGAGCTGATGAAGAAGGCGGGGAAGGAGGGTTTTACCT
ATGTGGCGGAGGGGGATGTCAAGAGGCATTATGATGTGCTTATGGGCCTG
GATCTGGTGGAGGGAGGGAGGTGAATGGCCGTGGCTCCCTTCGACTCCCG
CGCGGTGGATATGTTCCGGGTCTTGAGCACCAAGAGCCAGCACCCTACCC
ACTTCTTTCCCTTGTCCATGCTGACGGCGCAGGTCCTTCCCCCTCCAGCC
AAAGTGGCCATGGAGGTGGGTGAACGTCGGCTGGTGGCGCGCCGACCCGT
GCATGTGTATTTTGGGGATGAGCTAACCCCTGAACGGGTGGGAAGTGAAT
TTGTGGCACGAAAGATGAAGGACGGCACGGCGGAAGGTTTGACGGAGGAG
GAGCTGATGAAGAAGGCGGGGAAGGAGGGTTTTACCTATGTGGCGGAGGG
GGATGTCAAGAGGCATTATGATGTGCTTATGGGCCTGGATCTGGTGGAGG
GAGGGAGGTGA
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Synonyms
Publications