jgi.p|Nanoce1779_2|610310, mRNA_9973 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|610310
Unique NamemRNA_9973
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1304
Alignment locationscaffold_49:62104..63544 -

Link to JBrowse

Properties
Property NameValue
TranscriptId610396
TrackFilteredModels2
ProteinId610310
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:62104..63544 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610310gene_9973Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610310mRNA_9973-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9973CDS_9973Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9973 ID=mRNA_9973|Name=jgi.p|Nanoce1779_2|610310|organism=Nannochloropsis oceanica|type=mRNA|length=1304bp
AGGACTGAGCCAGCATAAACCAGGCCCCTTCTAAACCATGCCAGCCGCCA
GCTCAAGAGGGCCGCCAGCCATTCTTGTCCCAATCCTCCTCATCCTCGTC
CTTCTCCCCTCCTTCATAACCGCCTTTCTCCTCCCCACCTTGCCTTTCTC
CTCCTCCTTCTTCCCCCCTTCTTCTATCCTGCAAAGCAGAAGACATTCCT
CCACCGCACCCTCGTCGTTCTCACCTCTACACCCCCCTTCCCTACCCTTC
CGTGCCGCCGCTGACGACAACAAGGACCAACCACCCACCCCCAAAGGCTT
CGCCAAGAAGCAACCCAAAAAAGCAGCCCCGTCGTCCTCCCTTCCCTCCT
CTTCCCCCCCCTCCTCCTCTTCAGAAGCAAACGAGCCTGACAACCCCCTC
GCTGCCTCTCAAGCTTCCCTAGACGAGCTAGACCGACTGAGCGCGCGTCA
AAAAAGGTCCTACTGGGAAATCCAAGCGGAAATGGAACGAGAGATGGACA
TGCGGGAAATCGCCGAGTACAAAGAAACTCAACGTCTGCTGGATGAGGGC
ATTGTGGGTAACTTGCCCGAGCAGATAAGCAATCGGATGCTCAAGAGGCT
GTTACCCTTCACGTTCGTGCCTGTGTTGGGTGGCATAGCACTGTTTGGCT
TCTTTCTGTACCTGGCCAAGAATACGGAGATCGACGTGCCACCCGCTTTT
GTGGCCTTCTCGACGCAGGTGCCCTTCCTGGCGGCCTTGGCAGGCATTTC
GTATTCGATCATGAGTACGAGCTGGGACCCCGAGGTTGAGGGCTCCTTCT
GGGGTTTTACTGAGTTCAAGGCCAATGTCCTTAACCTCCTGGACTCATTA
CAAAAGACACGAAGGGAGGAGAGTGCGAAGAAAAAGCTGGAGAAGTACAG
TGGCACCCAGGCACCAAACAGAGCGAAGCGAAGGGAACTGGATCGATTGA
CGAAGTAAACATTGGAGAAGGTGTGGTGGTGATGAGGGAGTGAAGACAGA
AAGACGGAGAGTGGGAAGAAGAGGGTAATCAAAAGGGTAGTGGGTTCGAA
AGGAAGAATGTAGGTGGAATGTGTGTGGTTGCAGGGGGAGGTTTTGTTGT
CTTCCGCTTTTTCAAAATTTACAGAAAAGAAGCACAGATTTAATTATGTT
GAAACAGGTTTGGTCTTCTGCTTCTTTCCGCGCCCACTTTACCCCTTCGG
GGGGTTCTTTCGTCCTTCCTTCCTGAAGACAACGATAAAGATAAGGATAG
AAACAGGAAATAGATGAAGCCTTCAAAGGAATCTATCACTTTAGCGCAGC
ACAA
back to top

protein sequence of jgi.p|Nanoce1779_2|610310

>mRNA_9973-protein ID=mRNA_9973-protein|Name=jgi.p|Nanoce1779_2|610310|organism=Nannochloropsis oceanica|type=polypeptide|length=307bp
MPAASSRGPPAILVPILLILVLLPSFITAFLLPTLPFSSSFFPPSSILQS
RRHSSTAPSSFSPLHPPSLPFRAAADDNKDQPPTPKGFAKKQPKKAAPSS
SLPSSSPPSSSSEANEPDNPLAASQASLDELDRLSARQKRSYWEIQAEME
REMDMREIAEYKETQRLLDEGIVGNLPEQISNRMLKRLLPFTFVPVLGGI
ALFGFFLYLAKNTEIDVPPAFVAFSTQVPFLAALAGISYSIMSTSWDPEV
EGSFWGFTEFKANVLNLLDSLQKTRREESAKKKLEKYSGTQAPNRAKRRE
LDRLTK*
back to top

mRNA from alignment at scaffold_49:62104..63544-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9973 ID=mRNA_9973|Name=jgi.p|Nanoce1779_2|610310|organism=Nannochloropsis oceanica|type=mRNA|length=1441bp|location=Sequence derived from alignment at scaffold_49:62104..63544- (Nannochloropsis oceanica)
AGGACTGAGCCAGCATAAACCAGGCCCCTTCTAAACCATGCCAGCCGCCA
GCTCAAGAGGGCCGCCAGCCATTCTTGTCCCAATCCTCCTCATCCTCGTC
CTTCTCCCCTCCTTCATAACCGCCTTTCTCCTCCCCACCTTGCCTTTCTC
CTCCTCCTTCTTCCCCCCTTCTTCTATCCTGCAAAGCAGAAGACATTCCT
CCACCGCACCCTCGTCGTTCTCACCTCTACACCCCCCTTCCCTACCCTTC
CGTGCCGCCGCTGACGACAACAAGGACCAACCACCCACCCCCAAAGGCTT
CGCCAAGAAGCAACCCAAAAAAGCAGCCCCGTCGTCCTCCCTTCCCTCCT
CTTCCCCCCCCTCCTCCTCTTCAGAAGCAAACGAGCCTGACAACCCCCTC
GCTGCCTCTCAAGCTTCCCTAGACGAGCTAGACCGACTGAGCGCGCGTCA
AAAAAGGTCCTACTGGGAAATCCAAGCGGAAATGGAACGAGAGATGGACA
TGCGGGAAATCGCCGAGTACAAAGAAACTCAACGTCTGCTGGATGAGGGC
ATTGTGGGTAACTTGCCCGAGCAGATAAGCAATCGGATGCTCAAGAGGCT
GTTACCCTTCACGTTCGTGCCTGTGTTGGGTGGCATAGCACTGTTTGGCT
TCTTTCTGTACCTGGCCAAGAATACGGAGATCGACGTGCCACCCGCTTTT
GTGGCCTTCTCGACGCAGGTGCCCTTCCTGGCGGCCTTGGCAGGCATTTC
GTATTCGATCATGAGTACGAGCTGGGACCCCGAGGTGGGGAGGGAGGGAG
GGAGGGAAGGAGGGAGGGAGGGGGAGAGAGCGTGTAAAATATGACGTAGC
TGGAGATGTACTGTAGCACTCAGCCTTTAATCTTTCCCGTCTTTCTTCGT
CCTTCACACTTCATCATGTAGGTTGAGGGCTCCTTCTGGGGTTTTACTGA
GTTCAAGGCCAATGTCCTTAACCTCCTGGACTCATTACAAAAGACACGAA
GGGAGGAGAGTGCGAAGAAAAAGCTGGAGAAGTACAGTGGCACCCAGGCA
CCAAACAGAGCGAAGCGAAGGGAACTGGATCGATTGACGAAGTAAACATT
GGAGAAGGTGTGGTGGTGATGAGGGAGTGAAGACAGAAAGACGGAGAGTG
GGAAGAAGAGGGTAATCAAAAGGGTAGTGGGTTCGAAAGGAAGAATGTAG
GTGGAATGTGTGTGGTTGCAGGGGGAGGTTTTGTTGTCTTCCGCTTTTTC
AAAATTTACAGAAAAGAAGCACAGATTTAATTATGTTGAAACAGGTTTGG
TCTTCTGCTTCTTTCCGCGCCCACTTTACCCCTTCGGGGGGTTCTTTCGT
CCTTCCTTCCTGAAGACAACGATAAAGATAAGGATAGAAACAGGAAATAG
ATGAAGCCTTCAAAGGAATCTATCACTTTAGCGCAGCACAA
back to top

Coding sequence (CDS) from alignment at scaffold_49:62104..63544-

>mRNA_9973 ID=mRNA_9973|Name=jgi.p|Nanoce1779_2|610310|organism=Nannochloropsis oceanica|type=CDS|length=1842bp|location=Sequence derived from alignment at scaffold_49:62104..63544- (Nannochloropsis oceanica)
GTTGAGGGCTCCTTCTGGGGTTTTACTGAGTTCAAGGCCAATGTCCTTAA
CCTCCTGGACTCATTACAAAAGACACGAAGGGAGGAGAGTGCGAAGAAAA
AGCTGGAGAAGTACAGTGGCACCCAGGCACCAAACAGAGCGAAGCGAAGG
GAACTGGATCGATTGACGAAGTAAATGCCAGCCGCCAGCTCAAGAGGGCC
GCCAGCCATTCTTGTCCCAATCCTCCTCATCCTCGTCCTTCTCCCCTCCT
TCATAACCGCCTTTCTCCTCCCCACCTTGCCTTTCTCCTCCTCCTTCTTC
CCCCCTTCTTCTATCCTGCAAAGCAGAAGACATTCCTCCACCGCACCCTC
GTCGTTCTCACCTCTACACCCCCCTTCCCTACCCTTCCGTGCCGCCGCTG
ACGACAACAAGGACCAACCACCCACCCCCAAAGGCTTCGCCAAGAAGCAA
CCCAAAAAAGCAGCCCCGTCGTCCTCCCTTCCCTCCTCTTCCCCCCCCTC
CTCCTCTTCAGAAGCAAACGAGCCTGACAACCCCCTCGCTGCCTCTCAAG
CTTCCCTAGACGAGCTAGACCGACTGAGCGCGCGTCAAAAAAGGTCCTAC
TGGGAAATCCAAGCGGAAATGGAACGAGAGATGGACATGCGGGAAATCGC
CGAGTACAAAGAAACTCAACGTCTGCTGGATGAGGGCATTGTGGGTAACT
TGCCCGAGCAGATAAGCAATCGGATGCTCAAGAGGCTGTTACCCTTCACG
TTCGTGCCTGTGTTGGGTGGCATAGCACTGTTTGGCTTCTTTCTGTACCT
GGCCAAGAATACGGAGATCGACGTGCCACCCGCTTTTGTGGCCTTCTCGA
CGCAGGTGCCCTTCCTGGCGGCCTTGGCAGGCATTTCGTATTCGATCATG
AGTACGAGCTGGGACCCCGAGGTTGAGGGCTCCTTCTGGGGTTTTACTGA
GTTCAAGGCCAATGTCCTTAACCTCCTGGACTCATTACAAAAGACACGAA
GGGAGGAGAGTGCGAAGAAAAAGCTGGAGAAGTACAGTGGCACCCAGGCA
CCAAACAGAGCGAAGCGAAGGGAACTGGATCGATTGACGAAGTAAATGCC
AGCCGCCAGCTCAAGAGGGCCGCCAGCCATTCTTGTCCCAATCCTCCTCA
TCCTCGTCCTTCTCCCCTCCTTCATAACCGCCTTTCTCCTCCCCACCTTG
CCTTTCTCCTCCTCCTTCTTCCCCCCTTCTTCTATCCTGCAAAGCAGAAG
ACATTCCTCCACCGCACCCTCGTCGTTCTCACCTCTACACCCCCCTTCCC
TACCCTTCCGTGCCGCCGCTGACGACAACAAGGACCAACCACCCACCCCC
AAAGGCTTCGCCAAGAAGCAACCCAAAAAAGCAGCCCCGTCGTCCTCCCT
TCCCTCCTCTTCCCCCCCCTCCTCCTCTTCAGAAGCAAACGAGCCTGACA
ACCCCCTCGCTGCCTCTCAAGCTTCCCTAGACGAGCTAGACCGACTGAGC
GCGCGTCAAAAAAGGTCCTACTGGGAAATCCAAGCGGAAATGGAACGAGA
GATGGACATGCGGGAAATCGCCGAGTACAAAGAAACTCAACGTCTGCTGG
ATGAGGGCATTGTGGGTAACTTGCCCGAGCAGATAAGCAATCGGATGCTC
AAGAGGCTGTTACCCTTCACGTTCGTGCCTGTGTTGGGTGGCATAGCACT
GTTTGGCTTCTTTCTGTACCTGGCCAAGAATACGGAGATCGACGTGCCAC
CCGCTTTTGTGGCCTTCTCGACGCAGGTGCCCTTCCTGGCGGCCTTGGCA
GGCATTTCGTATTCGATCATGAGTACGAGCTGGGACCCCGAG
back to top
Synonyms
Publications