jgi.p|Nanoce1779_2|324155, mRNA_9971 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|324155
Unique NamemRNA_9971
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1265
Alignment locationscaffold_49:57476..59121 -

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Properties
Property NameValue
TranscriptId324241
TrackFilteredModels2
ProteinId324155
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:57476..59121 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|324155gene_9971Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|324155mRNA_9971-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9971CDS_9971Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9971 ID=mRNA_9971|Name=jgi.p|Nanoce1779_2|324155|organism=Nannochloropsis oceanica|type=mRNA|length=1265bp
GGGGAGACTACGAAGGTAAAGAAGAAGAACTGTACCATGGTCAAACGAAG
TCGATCTGCTTGTCCCTGGTTTGTGTGTCCTTGAGTTCGGGGGTGCGAAT
AAACGAAGTGCATGGGCCGGCAAGCTCAAGGAGCGTCATGCGCACGCCAA
CTGCTACCCTCACCCCCATTATCCAAATACATTTCCTCATGCAGGCACAC
AATGACCTTAGCGACAAGAAGAAGAATAGTTCACTGCTCTGGCGGGGCGC
CATTTTTATTGCTGTCGCTTTTCCTGTGTGTCGCAAAGGCCTTTATCCTT
CCTGTCTCGATATTGCCCCATCGACTGCCACACACGCCTTGTGCACTCCT
GCAGCAATCCGTTCTATCCAGATCAGCATCACCTGCAGCCTTATCCACGC
CAAAGAGCAAGATGAAAAGCATTTCTCGCCATGCCGTGTCTGACAATTAC
GATGCAGGAGGCCACAGCAGCAGCAGCACTAGCGGCCAAGACCAGCTTAA
AGCCCACGGCCATCATATAACTTTGGACTACACGTCCTTTTTCGTCGATG
CTCGCGACGGCGCCGCCCTGACCATGTCCCTCATCCGTGCCGCGGTCAAG
GAGGCGGGGGTCCGTGAAGTGCATTCACACATGGAGGTGTTGGGGGAGGA
TGGATTGAGTCCTCCGGGTTTCACAGGCATCTGTCTCATCGACGAAAGCC
ATGTGTCCGCACATTGCTATTCCGAACGAGGCTGGCTAGCTCTGGACGTC
TTCACCTGTGGCAAGACTGATCCTGCTGTAATCGCGGGAAACCTACACAA
ACGACTGACGGCCGCCGTACCCGGATTACGGATGATTAGGGGGATGAATT
TGGATAGATTCTTGCACGTGGATATGGATATGGAAGGGGAAGGGGGAGGT
AGGAGGGAGGAAGGGGAGGGAGGGCCGTTGGTTTTGGACCGGTGGATGGC
AGTGGAGGATGAGACGAGTTATTACAATAATGCGGATAAACACCGATGGG
GGAGGCAGGGAGGAGAGGCAGGGGGGGGAAGGTTTGCAGAGGAGGGGAGG
GAGGAAGGGGAGGAGGAGCAGAAGGACGGGAGGATGACGAGGGAAAAGAA
GGAGGAGAAGGAAGGGATTGATCGATGAAGGAGGGATAGACAGACACGGA
AGGCGTGACCGACGGGACGAGATCGGGCAGCAACTAGTAAATTTAGTAGT
ACAATCGTTTCCTACTCGTTGAGGGGTGCGGACGACAAGGTGCTTGGGAG
CGCAGGGGAAGGTGT
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protein sequence of jgi.p|Nanoce1779_2|324155

>mRNA_9971-protein ID=mRNA_9971-protein|Name=jgi.p|Nanoce1779_2|324155|organism=Nannochloropsis oceanica|type=polypeptide|length=339bp
MGRQAQGASCARQLLPSPPLSKYISSCRHTMTLATRRRIVHCSGGAPFLL
LSLFLCVAKAFILPVSILPHRLPHTPCALLQQSVLSRSASPAALSTPKSK
MKSISRHAVSDNYDAGGHSSSSTSGQDQLKAHGHHITLDYTSFFVDARDG
AALTMSLIRAAVKEAGVREVHSHMEVLGEDGLSPPGFTGICLIDESHVSA
HCYSERGWLALDVFTCGKTDPAVIAGNLHKRLTAAVPGLRMIRGMNLDRF
LHVDMDMEGEGGGRREEGEGGPLVLDRWMAVEDETSYYNNADKHRWGRQG
GEAGGGRFAEEGREEGEEEQKDGRMTREKKEEKEGIDR*
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mRNA from alignment at scaffold_49:57476..59121-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9971 ID=mRNA_9971|Name=jgi.p|Nanoce1779_2|324155|organism=Nannochloropsis oceanica|type=mRNA|length=1646bp|location=Sequence derived from alignment at scaffold_49:57476..59121- (Nannochloropsis oceanica)
GGGGAGACTACGAAGGTAAAGAAGAAGAACTGTACCATGGTCAAACGAAG
TCGATCTGCTTGTCCCTGGTTTGTGTGTCCTTGAGTTCGGGGGTGCGAAT
AAACGAAGTGCATGGGCCGGCAAGCTCAAGGAGCGTCATGCGCACGCCAA
CTGCTACCCTCACCCCCATTATCCAAATACATTTCCTCATGCAGGCACAC
AATGACCTTAGCGACAAGAAGAAGAATAGTTCACTGCTCTGGCGGGGCGC
CATTTTTATTGCTGTCGCTTTTCCTGTGTGTCGCAAAGGCCTTTATCCTT
CCTGTCTCGATATTGCCCCATCGACTGCCACACACGCCTTGTGCACTCCT
GCAGCAATCCGTTCTATCCAGATCAGCATCACCTGCAGCCTTATCCACGC
CAAAGAGCAAGATGAAAAGCATTTCTCGCCATGCCGTGTCTGACAATTAC
GATGCAGGAGGCCACAGGTAAATTGTCACTCCCTCCCTCCCTCCCTCCTT
GCATCCTTAATTGCTCTCCCCTTTTTCCTTCCCATAAACCTAATCCCGTC
AAGTAGGCCGACTATTCTTAGCTCCTTCTCCAGCTCTTTCCGCGTATATC
CCCGTATCTTTGCGTCAATCTTATTCTCTCTTCCCACATATTCCTCTCTC
CTTCCTTTCCCTCCTCATACTCTCCTGACACCCGGCTTTCGCAGCAGCAG
CAGCACTAGCGGCCAAGACCAGCTTAAAGCCCACGGCCATCATATAACTT
TGGACTACACGTCCTTTTTCGTCGATGCTCGCGACGGCGCCGCCCTGACC
ATGTCCCTCATCCGTGCCGCGGTCAAGGAGGCGGGGGTCCGTGAAGTGCA
TTCACACATGGAGGTGTTGGGGGAGGATGGATTGAGTCCTCCGGGTTTCA
CAGGTGTGCGGAGAAGGAGAAAGAAAGGGAGGGAGGGAAGGGGGGGGGGG
GAGGGAGGGAAGGAGGGCGGGAAGCAGTTCTGGTCGGGGATGGCTCAGCA
CTTTCATCATAAATATCTCATCCCATCCTCCCTCCCTCCCTCCTTCCCTC
CCTCCAGGCATCTGTCTCATCGACGAAAGCCATGTGTCCGCACATTGCTA
TTCCGAACGAGGCTGGCTAGCTCTGGACGTCTTCACCTGTGGCAAGACTG
ATCCTGCTGTAATCGCGGGAAACCTACACAAACGACTGACGGCCGCCGTA
CCCGGATTACGGATGATTAGGGGGATGAATTTGGATAGATTCTTGCACGT
GGATATGGATATGGAAGGGGAAGGGGGAGGTAGGAGGGAGGAAGGGGAGG
GAGGGCCGTTGGTTTTGGACCGGTGGATGGCAGTGGAGGATGAGACGAGT
TATTACAATAATGCGGATAAACACCGATGGGGGAGGCAGGGAGGAGAGGC
AGGGGGGGGAAGGTTTGCAGAGGAGGGGAGGGAGGAAGGGGAGGAGGAGC
AGAAGGACGGGAGGATGACGAGGGAAAAGAAGGAGGAGAAGGAAGGGATT
GATCGATGAAGGAGGGATAGACAGACACGGAAGGCGTGACCGACGGGACG
AGATCGGGCAGCAACTAGTAAATTTAGTAGTACAATCGTTTCCTACTCGT
TGAGGGGTGCGGACGACAAGGTGCTTGGGAGCGCAGGGGAAGGTGT
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Coding sequence (CDS) from alignment at scaffold_49:57476..59121-

>mRNA_9971 ID=mRNA_9971|Name=jgi.p|Nanoce1779_2|324155|organism=Nannochloropsis oceanica|type=CDS|length=3051bp|location=Sequence derived from alignment at scaffold_49:57476..59121- (Nannochloropsis oceanica)
GCATCTGTCTCATCGACGAAAGCCATGTGTCCGCACATTGCTATTCCGAA
CGAGGCTGGCTAGCTCTGGACGTCTTCACCTGTGGCAAGACTGATCCTGC
TGTAATCGCGGGAAACCTACACAAACGACTGACGGCCGCCGTACCCGGAT
TACGGATGATTAGGGGGATGAATTTGGATAGATTCTTGCACGTGGATATG
GATATGGAAGGGGAAGGGGGAGGTAGGAGGGAGGAAGGGGAGGGAGGGCC
GTTGGTTTTGGACCGGTGGATGGCAGTGGAGGATGAGACGAGTTATTACA
ATAATGCGGATAAACACCGATGGGGGAGGCAGGGAGGAGAGGCAGGGGGG
GGAAGGTTTGCAGAGGAGGGGAGGGAGGAAGGGGAGGAGGAGCAGAAGGA
CGGGAGGATGACGAGGGAAAAGAAGGAGGAGAAGGAAGGGATTGATCGAT
GACAGCAGCAGCACTAGCGGCCAAGACCAGCTTAAAGCCCACGGCCATCA
TATAACTTTGGACTACACGTCCTTTTTCGTCGATGCTCGCGACGGCGCCG
CCCTGACCATGTCCCTCATCCGTGCCGCGGTCAAGGAGGCGGGGGTCCGT
GAAGTGCATTCACACATGGAGGTGTTGGGGGAGGATGGATTGAGTCCTCC
GGGTTTCACAGATGGGCCGGCAAGCTCAAGGAGCGTCATGCGCACGCCAA
CTGCTACCCTCACCCCCATTATCCAAATACATTTCCTCATGCAGGCACAC
AATGACCTTAGCGACAAGAAGAAGAATAGTTCACTGCTCTGGCGGGGCGC
CATTTTTATTGCTGTCGCTTTTCCTGTGTGTCGCAAAGGCCTTTATCCTT
CCTGTCTCGATATTGCCCCATCGACTGCCACACACGCCTTGTGCACTCCT
GCAGCAATCCGTTCTATCCAGATCAGCATCACCTGCAGCCTTATCCACGC
CAAAGAGCAAGATGAAAAGCATTTCTCGCCATGCCGTGTCTGACAATTAC
GATGCAGGAGGCCACAGGCATCTGTCTCATCGACGAAAGCCATGTGTCCG
CACATTGCTATTCCGAACGAGGCTGGCTAGCTCTGGACGTCTTCACCTGT
GGCAAGACTGATCCTGCTGTAATCGCGGGAAACCTACACAAACGACTGAC
GGCCGCCGTACCCGGATTACGGATGATTAGGGGGATGAATTTGGATAGAT
TCTTGCACGTGGATATGGATATGGAAGGGGAAGGGGGAGGTAGGAGGGAG
GAAGGGGAGGGAGGGCCGTTGGTTTTGGACCGGTGGATGGCAGTGGAGGA
TGAGACGAGTTATTACAATAATGCGGATAAACACCGATGGGGGAGGCAGG
GAGGAGAGGCAGGGGGGGGAAGGTTTGCAGAGGAGGGGAGGGAGGAAGGG
GAGGAGGAGCAGAAGGACGGGAGGATGACGAGGGAAAAGAAGGAGGAGAA
GGAAGGGATTGATCGATGACAGCAGCAGCACTAGCGGCCAAGACCAGCTT
AAAGCCCACGGCCATCATATAACTTTGGACTACACGTCCTTTTTCGTCGA
TGCTCGCGACGGCGCCGCCCTGACCATGTCCCTCATCCGTGCCGCGGTCA
AGGAGGCGGGGGTCCGTGAAGTGCATTCACACATGGAGGTGTTGGGGGAG
GATGGATTGAGTCCTCCGGGTTTCACAGATGGGCCGGCAAGCTCAAGGAG
CGTCATGCGCACGCCAACTGCTACCCTCACCCCCATTATCCAAATACATT
TCCTCATGCAGGCACACAATGACCTTAGCGACAAGAAGAAGAATAGTTCA
CTGCTCTGGCGGGGCGCCATTTTTATTGCTGTCGCTTTTCCTGTGTGTCG
CAAAGGCCTTTATCCTTCCTGTCTCGATATTGCCCCATCGACTGCCACAC
ACGCCTTGTGCACTCCTGCAGCAATCCGTTCTATCCAGATCAGCATCACC
TGCAGCCTTATCCACGCCAAAGAGCAAGATGAAAAGCATTTCTCGCCATG
CCGTGTCTGACAATTACGATGCAGGAGGCCACAGGCATCTGTCTCATCGA
CGAAAGCCATGTGTCCGCACATTGCTATTCCGAACGAGGCTGGCTAGCTC
TGGACGTCTTCACCTGTGGCAAGACTGATCCTGCTGTAATCGCGGGAAAC
CTACACAAACGACTGACGGCCGCCGTACCCGGATTACGGATGATTAGGGG
GATGAATTTGGATAGATTCTTGCACGTGGATATGGATATGGAAGGGGAAG
GGGGAGGTAGGAGGGAGGAAGGGGAGGGAGGGCCGTTGGTTTTGGACCGG
TGGATGGCAGTGGAGGATGAGACGAGTTATTACAATAATGCGGATAAACA
CCGATGGGGGAGGCAGGGAGGAGAGGCAGGGGGGGGAAGGTTTGCAGAGG
AGGGGAGGGAGGAAGGGGAGGAGGAGCAGAAGGACGGGAGGATGACGAGG
GAAAAGAAGGAGGAGAAGGAAGGGATTGATCGATGACAGCAGCAGCACTA
GCGGCCAAGACCAGCTTAAAGCCCACGGCCATCATATAACTTTGGACTAC
ACGTCCTTTTTCGTCGATGCTCGCGACGGCGCCGCCCTGACCATGTCCCT
CATCCGTGCCGCGGTCAAGGAGGCGGGGGTCCGTGAAGTGCATTCACACA
TGGAGGTGTTGGGGGAGGATGGATTGAGTCCTCCGGGTTTCACAGATGGG
CCGGCAAGCTCAAGGAGCGTCATGCGCACGCCAACTGCTACCCTCACCCC
CATTATCCAAATACATTTCCTCATGCAGGCACACAATGACCTTAGCGACA
AGAAGAAGAATAGTTCACTGCTCTGGCGGGGCGCCATTTTTATTGCTGTC
GCTTTTCCTGTGTGTCGCAAAGGCCTTTATCCTTCCTGTCTCGATATTGC
CCCATCGACTGCCACACACGCCTTGTGCACTCCTGCAGCAATCCGTTCTA
TCCAGATCAGCATCACCTGCAGCCTTATCCACGCCAAAGAGCAAGATGAA
AAGCATTTCTCGCCATGCCGTGTCTGACAATTACGATGCAGGAGGCCACA
G
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Synonyms
Publications