jgi.p|Nanoce1779_2|610286, mRNA_9968 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|610286
Unique NamemRNA_9968
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length425
Alignment locationscaffold_49:50345..50769 +

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Properties
Property NameValue
TranscriptId610372
TrackFilteredModels2
ProteinId610286
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:50345..50769 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610286gene_9968Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610286mRNA_9968-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9968CDS_9968Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9968 ID=mRNA_9968|Name=jgi.p|Nanoce1779_2|610286|organism=Nannochloropsis oceanica|type=mRNA|length=425bp
CACCGGTTTCGTTTTCCATGGTTGCTGCTGATGGGTGGGGGTAGTTTGAG
GGTTTTGTACTGTGTAGTTGTGGTTGGGGCGGGTGAAAGGTGCGGTCATG
TGAAGGTCCAGGATGGTTTGCGGAAGGTGGGCTCAGGGTGTGAAACGGGG
GTGGTAGATGTAGGCGGCCACAACTCCTTGGGAAGGGCCGGGTCCCACAC
CTACACACTCTGGGGCCAAGCACTGGCTCCATGTCAAGGGTGCAGGACAT
GCGTCGGCGCAAGCGGGTAATCACCCTGCATGGGGGAGGGAGTGGGTGTG
CGCCGGAGGTGTGCCTTGATGACTGATGATGGTGCGGAGCGAGGCGGTTA
TGCACCCCACACCCACGATCAGACACACGCTCGACGCGCGGTCAGACAGG
CAAGGGCACTGCACGGTGTGGGCTG
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protein sequence of jgi.p|Nanoce1779_2|610286

>mRNA_9968-protein ID=mRNA_9968-protein|Name=jgi.p|Nanoce1779_2|610286|organism=Nannochloropsis oceanica|type=polypeptide|length=80bp
MGGGSLRVLYCVVVVGAGERCGHVKVQDGLRKVGSGCETGVVDVGGHNSL
GRAGSHTYTLWGQALAPCQGCRTCVGASG*
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mRNA from alignment at scaffold_49:50345..50769+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9968 ID=mRNA_9968|Name=jgi.p|Nanoce1779_2|610286|organism=Nannochloropsis oceanica|type=mRNA|length=425bp|location=Sequence derived from alignment at scaffold_49:50345..50769+ (Nannochloropsis oceanica)
CACCGGTTTCGTTTTCCATGGTTGCTGCTGATGGGTGGGGGTAGTTTGAG
GGTTTTGTACTGTGTAGTTGTGGTTGGGGCGGGTGAAAGGTGCGGTCATG
TGAAGGTCCAGGATGGTTTGCGGAAGGTGGGCTCAGGGTGTGAAACGGGG
GTGGTAGATGTAGGCGGCCACAACTCCTTGGGAAGGGCCGGGTCCCACAC
CTACACACTCTGGGGCCAAGCACTGGCTCCATGTCAAGGGTGCAGGACAT
GCGTCGGCGCAAGCGGGTAATCACCCTGCATGGGGGAGGGAGTGGGTGTG
CGCCGGAGGTGTGCCTTGATGACTGATGATGGTGCGGAGCGAGGCGGTTA
TGCACCCCACACCCACGATCAGACACACGCTCGACGCGCGGTCAGACAGG
CAAGGGCACTGCACGGTGTGGGCTG
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Coding sequence (CDS) from alignment at scaffold_49:50345..50769+

>mRNA_9968 ID=mRNA_9968|Name=jgi.p|Nanoce1779_2|610286|organism=Nannochloropsis oceanica|type=CDS|length=240bp|location=Sequence derived from alignment at scaffold_49:50345..50769+ (Nannochloropsis oceanica)
ATGGGTGGGGGTAGTTTGAGGGTTTTGTACTGTGTAGTTGTGGTTGGGGC
GGGTGAAAGGTGCGGTCATGTGAAGGTCCAGGATGGTTTGCGGAAGGTGG
GCTCAGGGTGTGAAACGGGGGTGGTAGATGTAGGCGGCCACAACTCCTTG
GGAAGGGCCGGGTCCCACACCTACACACTCTGGGGCCAAGCACTGGCTCC
ATGTCAAGGGTGCAGGACATGCGTCGGCGCAAGCGGGTAA
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Synonyms
Publications