jgi.p|Nanoce1779_2|610280, mRNA_9966 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|610280
Unique NamemRNA_9966
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length505
Alignment locationscaffold_49:46646..47395 -

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Properties
Property NameValue
TranscriptId610366
TrackFilteredModels2
ProteinId610280
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:46646..47395 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610280gene_9966Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610280mRNA_9966-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9966CDS_9966Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9966 ID=mRNA_9966|Name=jgi.p|Nanoce1779_2|610280|organism=Nannochloropsis oceanica|type=mRNA|length=505bp
TTTCAAAATTATTCATTCCCCGTTCTTTCCTTTACTCTTCCCCTCTCAAT
CTTGCCGGAGCCCGAACAAGGGAAGAGGAGCCCCTTCATCCATACCAACC
ACCGCAATCCTCTTTTGTCTTCTCACTCCTCGCCTTTCAGGCATATTTTA
TGCATCCATTCATTTACCCTGACTATTGGATATTCTTTCTCCTTCCTCTC
CTGACACGGATCATCCTCGCCTTCCCTTCATCTCTTCATCCTCGCATTGT
TATTCGTATTGTTGGTGGTGGCGGTGGTGGTGAGAGGAGGGAGATGGCTC
GAGTTTCGGCTAACGCTTTTTCAAAGGCAAGATTGTTGTGGTGGGCTTTC
CTGCCATGCTAGCTTTCCATTGCTTTTCGATCTTCAACCTGTTTTCTTTG
CGAGCGGTCGCGCGTTCCTTAAATTCTGCCTCATATGCACGCTTTTCTGC
GGCGCGGGTACGAGACTGTGCAGAGCCCATTTTATCGAGTGGCTGTGTGT
GCTGT
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protein sequence of jgi.p|Nanoce1779_2|610280

>mRNA_9966-protein ID=mRNA_9966-protein|Name=jgi.p|Nanoce1779_2|610280|organism=Nannochloropsis oceanica|type=polypeptide|length=71bp
MHPFIYPDYWIFFLLPLLTRIILAFPSSLHPRIVIRIVGGGGGGERREMA
RVSANAFSKARLLWWAFLPC*
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mRNA from alignment at scaffold_49:46646..47395-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9966 ID=mRNA_9966|Name=jgi.p|Nanoce1779_2|610280|organism=Nannochloropsis oceanica|type=mRNA|length=750bp|location=Sequence derived from alignment at scaffold_49:46646..47395- (Nannochloropsis oceanica)
TTTCAAAATTATTCATTCCCCGTTCTTTCCTTTACTCTTCCCCTCTCAAT
CTTGCCGGAGCCCGAACAAGGGAAGAGGAGCCCCTTCATCCATACCAACC
ACCGCAATCCTCTTTTGTCTTCTCACTCCTCGCCTTTCAGGCATATTTTA
TGCATCCATTCATTTACCCTGACTATTGGATATTCTTTCTCCTTCCTCTC
CTGACACGGATCATCCTCGCCTTCCCTTCATCTCTTCATCCTCGCATTGT
TATTCGTATTGTTGGTGGTGGCGGTGGTGGTGAGAGGAGGGAGATGGCTC
GAGTTTCGGCTAACGCTTTTTCAAAGGCAAGATTGTTGTGGTGGGCTTTC
CTGCCATGCTAGCTTTCCATCTGTGACGGGGAAAGGAGAGAGGGATTGTG
AGCGCATGAAGGCGGTTGGTTAGGTAACAACGCGGGGGAGAGAAGGGGGC
ATTGTGGGGCAGATCCCACGAGTGCACGTACTGCTTTTCGATCTTCAACC
TGTTTTCTTTGCGAGCGGTCGCGCGTTCCTTCTGTAAGTTTATGTATGTT
GATAGTGGGTTTGTATGAGTGTTTTGGTCTGGCTGGCCTATTGCAGGCGC
GGGATGGGTAGGTACGAGGGAGGGAGGAGCAAGGGAAGGGAGACGAGAGA
GTTCATAATACTCACAAATTCTGCCTCATATGCACGCTTTTCTGCGGCGC
GGGTACGAGACTGTGCAGAGCCCATTTTATCGAGTGGCTGTGTGTGCTGT
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Coding sequence (CDS) from alignment at scaffold_49:46646..47395-

>mRNA_9966 ID=mRNA_9966|Name=jgi.p|Nanoce1779_2|610280|organism=Nannochloropsis oceanica|type=CDS|length=213bp|location=Sequence derived from alignment at scaffold_49:46646..47395- (Nannochloropsis oceanica)
ATGCATCCATTCATTTACCCTGACTATTGGATATTCTTTCTCCTTCCTCT
CCTGACACGGATCATCCTCGCCTTCCCTTCATCTCTTCATCCTCGCATTG
TTATTCGTATTGTTGGTGGTGGCGGTGGTGGTGAGAGGAGGGAGATGGCT
CGAGTTTCGGCTAACGCTTTTTCAAAGGCAAGATTGTTGTGGTGGGCTTT
CCTGCCATGCTAG
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Synonyms
Publications