jgi.p|Nanoce1779_2|661315, mRNA_9965 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|661315
Unique Name	mRNA_9965
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1416
Alignment location	scaffold_49:44615..46199 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	661401
Track	FilteredModels2
ProteinId	661315

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_49	supercontig	scaffold_49:44615..46199 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|661315	gene_9965	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|661315	mRNA_9965-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9965	CDS_9965	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_49:44615..46199+
coding sequence from alignment at scaffold_49:44615..46199+

mRNA sequence

>mRNA_9965 ID=mRNA_9965|Name=jgi.p|Nanoce1779_2|661315|organism=Nannochloropsis oceanica|type=mRNA|length=1416bp
ATGGATGAATCGATAACACTTTTGGAGGATGGCATGACGCCCGCCGGCAA
GGCCGCCTCCATGTCCATTTCTGCCTCTGGAGGCGGCAACGGGGAGACCA
GCGGAGATGCAAGCACGCCCAGCACTGTCAATAGTGATGCTGATGTGGAT
AGCAAGAGTAAAGGTTGCTTTACCAACGCCTGCTGTGTGCATCCATTGTT
AGTGCTGGTGCAATTCATTTTCTCGGGTTACCACGTGTTGACCTCAAGCG
CCCTCAAAACCAAGGGTGTTGACCCGTTGGTCTTTGCACTGTATCGGGAG
CTGAGTGCATCGGCGTTGATGGCGATGTGCGCCAGCATGGCCGTATGGAA
GGGGAAGCACAACTGGCACCTAAAAAAGGAGCATGTCCCACGTTTTCTCG
CCATGGGTCTCTTTTCCGCTGGGAACGTCCTGGGTGCAGTGCAATCACTC
ACCCTCATCTCGCCGACTAATTTCTCGGTATTACAACCGTCCATCCCAGT
CTTCACCATGATGCTCTCCGTCCTCTTCCGCATGGAAAAACTCACCCCCA
TCAAGACCCTGGGCCTCCTAGCCGCCGTTGCGGGCGCAGTGGTCGTGGAA
GTAGTCCACTCACCCATACCCGGAACAGGCGAGAAAGCGAGCCAAGCGGA
CTTTATTGCCGGAAACGTCATCGTCATCCTTCAATGCCTCTCCATGGCCT
CCCTCCTGGTCTTTCAAAAAAAAGCCCTTCTCTTCTACCACCCCACCATC
GTGACGGCCTGGTACTACAGCATTGGCTCCATTCTCACCCTCCTCATTTG
CCTTTCCAAGTCCCTCCCCGCCTCCGCTTACGCCCTCTCGTCTTCCCTCG
CCCCCTGGCTTGCTCTTGCCTATGCCGCCATATTCGGAACAGCTTTTAAC
TATAATGCGTACAGCTGGGCAGGGACGGTGGTGGTCCCCGCAGTGATATC
AATTTATTCAACGCTGCAGCCGTTGGGGACCGCACTTCTGTCTTTCGTCT
TTTTGGGGGACAAGGTCACGGGGGGCGAGGCGGGCGGAGGAGTGTTGGTG
GTGCTGGGGCTGATCGGAACGGTGTGGGGGAGGGAGAGGGAGAGGGAGAG
GAAGGCGGGAAAGGAGAACGAAGAGAAGAGGGGAAATGAGGAGGAGGAGG
TAGTGCAGGGAAGGGGGGCAGGGGAGGGGGAGGAAGGGATGGAGGGCATG
GTGGCTGGAGGAGGGGGAGGAAGAGGAGGAACGGCCTCTTACGGCTTGAC
AGGAAGGAGAGACAGTAAGTCACAGCCTTTGGTACAGGAGCAGGGAGGGG
AAATAGAGGAGAGAGGGAGGAAGGGAAGGGTGGCTATTTGACGGTGGTGG
CTGAGTTTCCTCCCTGGCGTGGAGAAGGACAAAGGATGGTGAGGATTTAA
GATCCCCTCTTGACTT

protein sequence of jgi.p|Nanoce1779_2|661315

>mRNA_9965-protein ID=mRNA_9965-protein|Name=jgi.p|Nanoce1779_2|661315|organism=Nannochloropsis oceanica|type=polypeptide|length=447bp
MDESITLLEDGMTPAGKAASMSISASGGGNGETSGDASTPSTVNSDADVD
SKSKGCFTNACCVHPLLVLVQFIFSGYHVLTSSALKTKGVDPLVFALYRE
LSASALMAMCASMAVWKGKHNWHLKKEHVPRFLAMGLFSAGNVLGAVQSL
TLISPTNFSVLQPSIPVFTMMLSVLFRMEKLTPIKTLGLLAAVAGAVVVE
VVHSPIPGTGEKASQADFIAGNVIVILQCLSMASLLVFQKKALLFYHPTI
VTAWYYSIGSILTLLICLSKSLPASAYALSSSLAPWLALAYAAIFGTAFN
YNAYSWAGTVVVPAVISIYSTLQPLGTALLSFVFLGDKVTGGEAGGGVLV
VLGLIGTVWGRERERERKAGKENEEKRGNEEEEVVQGRGAGEGEEGMEGM
VAGGGGGRGGTASYGLTGRRDSKSQPLVQEQGGEIEERGRKGRVAI*

mRNA from alignment at scaffold_49:44615..46199+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9965 ID=mRNA_9965|Name=jgi.p|Nanoce1779_2|661315|organism=Nannochloropsis oceanica|type=mRNA|length=1585bp|location=Sequence derived from alignment at scaffold_49:44615..46199+ (Nannochloropsis oceanica)
ATGGATGAATCGATAACACTTTTGGAGGATGGCATGACGCCCGCCGGCAA
GGCCGCCTCCATGTCCATTTCTGCCTCTGGAGGCGGCAACGGGGAGACCA
GCGGAGATGCAAGCACGCCCAGCACTGTCAATAGTGATGCTGATGTGGAT
AGCAAGAGTAAAGGTTGCTTTACCAACGCCTGCTGTGTGCATCCATTGTT
AGTGCTGGTGCAATTCATTTTCTCGGGTTACCACGTGTTGACCTCAAGCG
CCCTCAAAACCAAGGGTGTTGACCCGTTGGTCTTTGCACTGTATCGGGAG
CTGAGTGCATCGGCGTTGATGGCGATGTGCGCCAGCATGGCCGTATGGAA
GGGGAAGCACAAGTATGTAGAGGGTGGGAAATGGAGGGCGAGGACCGCGT
GCTTGAATCGTGGTAGTGGTGGTGACAATTGTCTTCCGTCATGCCGCAAT
GTTTAACTCGTGTTACTCATCACTCCTACCCCCCTTCTCCCCCCCCCTCC
CTCCATTCCTTCCCTCTCCTCCTCCCTCCAGCTGGCACCTAAAAAAGGAG
CATGTCCCACGTTTTCTCGCCATGGGTCTCTTTTCCGCTGGGAACGTCCT
GGGTGCAGTGCAATCACTCACCCTCATCTCGCCGACTAATTTCTCGGTAT
TACAACCGTCCATCCCAGTCTTCACCATGATGCTCTCCGTCCTCTTCCGC
ATGGAAAAACTCACCCCCATCAAGACCCTGGGCCTCCTAGCCGCCGTTGC
GGGCGCAGTGGTCGTGGAAGTAGTCCACTCACCCATACCCGGAACAGGCG
AGAAAGCGAGCCAAGCGGACTTTATTGCCGGAAACGTCATCGTCATCCTT
CAATGCCTCTCCATGGCCTCCCTCCTGGTCTTTCAAAAAAAAGCCCTTCT
CTTCTACCACCCCACCATCGTGACGGCCTGGTACTACAGCATTGGCTCCA
TTCTCACCCTCCTCATTTGCCTTTCCAAGTCCCTCCCCGCCTCCGCTTAC
GCCCTCTCGTCTTCCCTCGCCCCCTGGCTTGCTCTTGCCTATGCCGCCAT
ATTCGGAACAGCTTTTAACTATAATGCGTACAGCTGGGCAGGGACGGTGG
TGGTCCCCGCAGTGATATCAATTTATTCAACGCTGCAGCCGTTGGGGACC
GCACTTCTGTCTTTCGTCTTTTTGGGGGACAAGGTCACGGGGGGCGAGGC
GGGCGGAGGAGTGTTGGTGGTGCTGGGGCTGATCGGAACGGTGTGGGGGA
GGGAGAGGGAGAGGGAGAGGAAGGCGGGAAAGGAGAACGAAGAGAAGAGG
GGAAATGAGGAGGAGGAGGTAGTGCAGGGAAGGGGGGCAGGGGAGGGGGA
GGAAGGGATGGAGGGCATGGTGGCTGGAGGAGGGGGAGGAAGAGGAGGAA
CGGCCTCTTACGGCTTGACAGGAAGGAGAGACAGTAAGTCACAGCCTTTG
GTACAGGAGCAGGGAGGGGAAATAGAGGAGAGAGGGAGGAAGGGAAGGGT
GGCTATTTGACGGTGGTGGCTGAGTTTCCTCCCTGGCGTGGAGAAGGACA
AAGGATGGTGAGGATTTAAGATCCCCTCTTGACTT

Coding sequence (CDS) from alignment at scaffold_49:44615..46199+

>mRNA_9965 ID=mRNA_9965|Name=jgi.p|Nanoce1779_2|661315|organism=Nannochloropsis oceanica|type=CDS|length=2682bp|location=Sequence derived from alignment at scaffold_49:44615..46199+ (Nannochloropsis oceanica)
ATGGATGAATCGATAACACTTTTGGAGGATGGCATGACGCCCGCCGGCAA
GGCCGCCTCCATGTCCATTTCTGCCTCTGGAGGCGGCAACGGGGAGACCA
GCGGAGATGCAAGCACGCCCAGCACTGTCAATAGTGATGCTGATGTGGAT
AGCAAGAGTAAAGGTTGCTTTACCAACGCCTGCTGTGTGCATCCATTGTT
AGTGCTGGTGCAATTCATTTTCTCGGGTTACCACGTGTTGACCTCAAGCG
CCCTCAAAACCAAGGGTGTTGACCCGTTGGTCTTTGCACTGTATCGGGAG
CTGAGTGCATCGGCGTTGATGGCGATGTGCGCCAGCATGGCCGTATGGAA
GGGGAAGCACAACTGGCACCTAAAAAAGGAGCATGTCCCACGTTTTCTCG
CCATGGGTCTCTTTTCCGCTGGGAACGTCCTGGGTGCAGTGCAATCACTC
ACCCTCATCTCGCCGACTAATTTCTCGGTATTACAACCGTCCATCCCAGT
CTTCACCATGATGCTCTCCGTCCTCTTCCGCATGGAAAAACTCACCCCCA
TCAAGACCCTGGGCCTCCTAGCCGCCGTTGCGGGCGCAGTGGTCGTGGAA
GTAGTCCACTCACCCATACCCGGAACAGGCGAGAAAGCGAGCCAAGCGGA
CTTTATTGCCGGAAACGTCATCGTCATCCTTCAATGCCTCTCCATGGCCT
CCCTCCTGGTCTTTCAAAAAAAAGCCCTTCTCTTCTACCACCCCACCATC
GTGACGGCCTGGTACTACAGCATTGGCTCCATTCTCACCCTCCTCATTTG
CCTTTCCAAGTCCCTCCCCGCCTCCGCTTACGCCCTCTCGTCTTCCCTCG
CCCCCTGGCTTGCTCTTGCCTATGCCGCCATATTCGGAACAGCTTTTAAC
TATAATGCGTACAGCTGGGCAGGGACGGTGGTGGTCCCCGCAGTGATATC
AATTTATTCAACGCTGCAGCCGTTGGGGACCGCACTTCTGTCTTTCGTCT
TTTTGGGGGACAAGGTCACGGGGGGCGAGGCGGGCGGAGGAGTGTTGGTG
GTGCTGGGGCTGATCGGAACGGTGTGGGGGAGGGAGAGGGAGAGGGAGAG
GAAGGCGGGAAAGGAGAACGAAGAGAAGAGGGGAAATGAGGAGGAGGAGG
TAGTGCAGGGAAGGGGGGCAGGGGAGGGGGAGGAAGGGATGGAGGGCATG
GTGGCTGGAGGAGGGGGAGGAAGAGGAGGAACGGCCTCTTACGGCTTGAC
AGGAAGGAGAGACAGTAAGTCACAGCCTTTGGTACAGGAGCAGGGAGGGG
AAATAGAGGAGAGAGGGAGGAAGGGAAGGGTGGCTATTTGAATGGATGAA
TCGATAACACTTTTGGAGGATGGCATGACGCCCGCCGGCAAGGCCGCCTC
CATGTCCATTTCTGCCTCTGGAGGCGGCAACGGGGAGACCAGCGGAGATG
CAAGCACGCCCAGCACTGTCAATAGTGATGCTGATGTGGATAGCAAGAGT
AAAGGTTGCTTTACCAACGCCTGCTGTGTGCATCCATTGTTAGTGCTGGT
GCAATTCATTTTCTCGGGTTACCACGTGTTGACCTCAAGCGCCCTCAAAA
CCAAGGGTGTTGACCCGTTGGTCTTTGCACTGTATCGGGAGCTGAGTGCA
TCGGCGTTGATGGCGATGTGCGCCAGCATGGCCGTATGGAAGGGGAAGCA
CAACTGGCACCTAAAAAAGGAGCATGTCCCACGTTTTCTCGCCATGGGTC
TCTTTTCCGCTGGGAACGTCCTGGGTGCAGTGCAATCACTCACCCTCATC
TCGCCGACTAATTTCTCGGTATTACAACCGTCCATCCCAGTCTTCACCAT
GATGCTCTCCGTCCTCTTCCGCATGGAAAAACTCACCCCCATCAAGACCC
TGGGCCTCCTAGCCGCCGTTGCGGGCGCAGTGGTCGTGGAAGTAGTCCAC
TCACCCATACCCGGAACAGGCGAGAAAGCGAGCCAAGCGGACTTTATTGC
CGGAAACGTCATCGTCATCCTTCAATGCCTCTCCATGGCCTCCCTCCTGG
TCTTTCAAAAAAAAGCCCTTCTCTTCTACCACCCCACCATCGTGACGGCC
TGGTACTACAGCATTGGCTCCATTCTCACCCTCCTCATTTGCCTTTCCAA
GTCCCTCCCCGCCTCCGCTTACGCCCTCTCGTCTTCCCTCGCCCCCTGGC
TTGCTCTTGCCTATGCCGCCATATTCGGAACAGCTTTTAACTATAATGCG
TACAGCTGGGCAGGGACGGTGGTGGTCCCCGCAGTGATATCAATTTATTC
AACGCTGCAGCCGTTGGGGACCGCACTTCTGTCTTTCGTCTTTTTGGGGG
ACAAGGTCACGGGGGGCGAGGCGGGCGGAGGAGTGTTGGTGGTGCTGGGG
CTGATCGGAACGGTGTGGGGGAGGGAGAGGGAGAGGGAGAGGAAGGCGGG
AAAGGAGAACGAAGAGAAGAGGGGAAATGAGGAGGAGGAGGTAGTGCAGG
GAAGGGGGGCAGGGGAGGGGGAGGAAGGGATGGAGGGCATGGTGGCTGGA
GGAGGGGGAGGAAGAGGAGGAACGGCCTCTTACGGCTTGACAGGAAGGAG
AGACAGTAAGTCACAGCCTTTGGTACAGGAGCAGGGAGGGGAAATAGAGG
AGAGAGGGAGGAAGGGAAGGGTGGCTATTTGA

Synonyms

Publications