jgi.p|Nanoce1779_2|323908, mRNA_9960 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|323908
Unique Name	mRNA_9960
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1358
Alignment location	scaffold_49:25124..27614 +

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Properties


Property Name	Value
TranscriptId	323994
Track	FilteredModels2
ProteinId	323908

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_49	supercontig	scaffold_49:25124..27614 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|323908	gene_9960	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|323908	mRNA_9960-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9960	CDS_9960	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_49:25124..27614+
coding sequence from alignment at scaffold_49:25124..27614+

mRNA sequence

>mRNA_9960 ID=mRNA_9960|Name=jgi.p|Nanoce1779_2|323908|organism=Nannochloropsis oceanica|type=mRNA|length=1358bp
TCAGCGTTAAGACATGAGTTGAATGCACAATCGATTGCGGCTGGCACATG
TATTGTAAGGGTATTGCATCGTGGTGCCCGGTAATATTCGCCTAAGGCGC
ATAACGGGTAGCGCGATAAGGATGCGTTGCATTGCGCTCCAGAAGAACAG
TCGCTGGCATCGCTCGAGATTTACACCATCCCCGGTTTCCACATACCGCC
CATCCCAACCACCTTTTCTGGTCGCGCATATCTTCAAGGGAGTGGCCTAG
AGAAGAGTGAGGAGAAGTGCGCGATGCAGGTCTCTGGGCTGGCCATGTGG
CATGTTTTCTTCCGTCCTTTCACCTGCATCACTCTGCCTCATCCCTCCAC
CTTACTCACCACCTCTCCATCCATCCCGACCCACAACAGGCAGACAGGCA
CGCCTGGTCACATCCTGCAGGCCTTCCCTTCAGTAGAGGGTCCGGCATCA
TGAAGACTAATTACGAGGAAACCCTGAAAAGGCTGCGAGAGAAACAAGCT
GGAGGCTATGACATAGCAGCCATATTTGGGGTCAAGGCACCATCCAACTC
CTCTTCTGCCGCTGGCAAACAGGCCGTGCAGGGAGGAGGGGGAGGAGGAG
GAGGGGGTGGCAGTGGCGGCGCGCATGCACATCTACAAAAACAGTCAGCC
CCTAGTGGAGGAGGAAGAAGTGGAGGAGGAGGGTTGGGGGCATCGTCCTC
CATCTCCACCTCCTCCATTCAGTCCCTCAAGATCCTGCAAGGATTCGTCA
GTGGCCAAGCACCCCGTCCTCCCCCTCCCCCTCCTCCTTCGTCGTCAACC
CCGTCATCTTCTTCAAGTAGTCGAAGGCCTCAGGAATCTGCTGATGGAGG
GGGAGAAGGGACGGGAAGCGGAGGAGGGTATCAACCACGGCCACCGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGA
TCACCATTACAGGAGTTGCGAGTTGGAGGAGGAGGAGGATTAGGAGGAAA
GGAGGGAGGATGGAGTAGTGGAGAGTACGTGAAGCTGCAACAGCAGCATC
ATGTGAGGTCAGTGGTGCCCCCTTACACACCAGAAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAGGAGGAAGAGGAGGA
GGAGGAGGAGGATCGACGGTAGGATATGATAGTTTGCTTTGGATTGGTGG
CGATGACAACGGCAGCAGCAGCACCAGAAACAAGTGCAATGACAGTTACG
TCCATGAAGGACGGGTTGAAGGAGGAGGAGGAAGGGGAGAAGGAGGGTGG
GGGGCGAGCGGCCTGATCGAGAAGGAGCGAGGGGAGCCTTGTGCCCAATG
CGGAAAAC

protein sequence of jgi.p|Nanoce1779_2|323908

>mRNA_9960-protein ID=mRNA_9960-protein|Name=jgi.p|Nanoce1779_2|323908|organism=Nannochloropsis oceanica|type=polypeptide|length=241bp
MKTNYEETLKRLREKQAGGYDIAAIFGVKAPSNSSSAAGKQAVQGGGGGG
GGGGSGGAHAHLQKQSAPSGGGRSGGGGLGASSSISTSSIQSLKILQGFV
SGQAPRPPPPPPPSSSTPSSSSSSRRPQESADGGGEGTGSGGGYQPRPPQ
QQQQQQQQQQQQQQQQRSPLQELRVGGGGGLGGKEGGWSSGEYVKLQQQH
HVRSVVPPYTPEGGGGGGGGGGGGGGGGEEEEEEEEEDRR*

mRNA from alignment at scaffold_49:25124..27614+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9960 ID=mRNA_9960|Name=jgi.p|Nanoce1779_2|323908|organism=Nannochloropsis oceanica|type=mRNA|length=2491bp|location=Sequence derived from alignment at scaffold_49:25124..27614+ (Nannochloropsis oceanica)
TCAGCGTTAAGACATGAGTTGAATGCACAATCGATTGCGGCTGGCACATG
TATTGTAAGGGTATTGCATCGTGGTGCCCGGTAATATTCGCCTAAGGCGC
ATAACGGGTAGCGCGATAAGGATGCGTTGCATTGCGCTCCAGAAGAACAG
TCGCTGGCATCGCTCGAGATTTACACCATCCCCGGTTTCCACATACCGCC
CATCCCAACCACCTTTTCTGGTCGCGCATATCTTCAAGGGAGTGGCCTAG
AGAAGAGTGAGGAGAAGTGCGCGATGCAGGTCTCTGGGCTGGCCATGTGG
CATGTTTTCTTCCGTCCTTTCACCTGCATCACTCTGCCTCATCCCTCCAC
CTTACTCACCACCTCTCCATCCATCCCGACCCACAACAGGCAGACAGGCA
CGCCTGGTCACATCCTGCAGGCCTTCCCTTCAGTAGAGGGTCCGGCATCA
TGAAGACTAATTACGAGGAAACCCTGAAAAGGCTGCGAGAGGTAATGCAA
ACCACCACATTCCCTTCCTTCCACCCTCCGTCCACTTCTGCCCCTTCTGC
CTTCTTTCATCCCTCCCTCCTCATCGACCTCCACCCGTCCACGTACGCAC
ACGCACGCAGAAACAAGCTGGAGGCTATGACATAGCAGCCATATTTGGGG
TCAAGGCACCATCCAACTCCTCTTCTGCCGCTGGCAAACAGGCCGTGCAG
GGAGGAGGGGGAGGAGGAGGAGGGGGTGGCAGTGGCGGCGCGCATGCACA
TCTACAAAAACAGTCAGCCCCTAGTGGAGGAGGAAGAAGTGGAGGAGGAG
GGTTGGGGGCATCGTCCTCCATCTCCACCTCCTCCATTCAGTCCCTCAAG
ATCCTGCAAGGATTCGTCAGTGGCCAAGCACCCCGTCCTCCCCCTCCCCC
TCCTCCTTCGTCGTCAACCCCGTCATCTTCTTCAAGTAGTCGAAGGCCTC
AGGAATCTGCTGATGGAGGGGGAGAAGGGACGGGAAGCGGAGGAGGGTAT
CAACCACGGCCACCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCGATCACCATTACAGGAGTTGCGAGTTGGAGGAG
GAGGAGGATTAGGAGGAAAGGAGGGAGGATGGAGTAGTGGAGAGTACGTG
AAGCTGCAACAGCAGCATCATGTGAGGTCAGTGGTGCCCCCTTACACACC
AGAAGGAGGAGGAGGAGGAGGAGGAGGAGGTACGCGTCTTGCTGTCCCTC
CTCACAAGCCCCAGCTTCAAATTCATCAGCAGCAGCAGCACCCAGCACCA
CCGGCAGAAAGAAGAGGAGGAGGCGCAGGCGGGGGAAACGTAGTTGAGTG
GGGAAAAGGACAGGGAGGAGGGGCCGGGGGAGGAAGTGGGGGAGGAAGGG
GCAAGGAAGACGAGGACGGGAAGTGCCAGTCGAGGATTTCCACCTTCTTT
TCAACCACTAAGAATTCAGCAGCAGCACCTGCAGCAACCGCACTGAGAGC
AGGAGCAGGAGCCGGAGCAGGAGTAGCAGGAGTAGCAGCAGGAGTAGCAG
CAGCAGTAGCAGCAGGAGCAGTAGCAGCAGGAGGCGACGAGAACCAACCG
CCCCCTCCACCTTCACTCCTCCGCCCCTCCCGCCATTCCTCCTCCTCCTC
CACTTCCTCCTCCTCCGCGTCCACCATCGATCTCACCATGAGCCTCGACG
GCCTCCCTCTCCCCCTTCCTCCTTCCCGCCCTACGTCCTCCTCCTCTTCC
TCCTCTTTCACTTCCTCAGGCACCGTCCCCAAAAAACCACCACCTTCACC
CGCTCCCTCCTTCCCCTCCCTCCCTCTCTCTCTCGACCTCGAGAAGCAAA
AACAGCGACTGGTGGCTCGTCTGAAAGTGATAGCTGCAGAGGGCACACGG
CTGCTGGACGAGGAGGGGGAGGCGCTTCCTCCCTCCCTCAGGGCAGAAGA
AGATCGACTGAGTCTGGAACTGAGGAAAGTAAATGCCCTGATCAAGACTG
GAGGAAGAGGAGGAGGGGGGGGGGGGAGGACGGGAGGGAGGCGTTGATGG
AGGGGGGGGGGAGGGTTGGGGATTGGAACAGTGATAAAGGAGGAGGAGAA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGTGGCTGGGGCCTTGCCGACACC
CACCATACCACCCTACCAACCTTCCTCCTCCGCCTTCTCTTCATCTTTTT
CGCCCTCCCGCCCTACCTACCTCCCTAATCCTCCTTCGACTGCGTTTGGG
GGTCCACCACCAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGATCGAC
GGTAGGATATGATAGTTTGCTTTGGATTGGTGGCGATGACAACGGCAGCA
GCAGCACCAGAAACAAGTGCAATGACAGTTACGTCCATGAAGGACGGGTT
GAAGGAGGAGGAGGAAGGGGAGAAGGAGGGTGGGGGGCGAGCGGCCTGAT
CGAGAAGGAGCGAGGGGAGCCTTGTGCCCAATGCGGAAAAC

Coding sequence (CDS) from alignment at scaffold_49:25124..27614+

>mRNA_9960 ID=mRNA_9960|Name=jgi.p|Nanoce1779_2|323908|organism=Nannochloropsis oceanica|type=CDS|length=2892bp|location=Sequence derived from alignment at scaffold_49:25124..27614+ (Nannochloropsis oceanica)
ATGAAGACTAATTACGAGGAAACCCTGAAAAGGCTGCGAGAGAAACAAGC
TGGAGGCTATGACATAGCAGCCATATTTGGGGTCAAGGCACCATCCAACT
CCTCTTCTGCCGCTGGCAAACAGGCCGTGCAGGGAGGAGGGGGAGGAGGA
GGAGGGGGTGGCAGTGGCGGCGCGCATGCACATCTACAAAAACAGTCAGC
CCCTAGTGGAGGAGGAAGAAGTGGAGGAGGAGGGTTGGGGGCATCGTCCT
CCATCTCCACCTCCTCCATTCAGTCCCTCAAGATCCTGCAAGGATTCGTC
AGTGGCCAAGCACCCCGTCCTCCCCCTCCCCCTCCTCCTTCGTCGTCAAC
CCCGTCATCTTCTTCAAGTAGTCGAAGGCCTCAGGAATCTGCTGATGGAG
GGGGAGAAGGGACGGGAAGCGGAGGAGGGTATCAACCACGGCCACCGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCG
ATCACCATTACAGGAGTTGCGAGTTGGAGGAGGAGGAGGATTAGGAGGAA
AGGAGGGAGGATGGAGTAGTGGAGAGTACGTGAAGCTGCAACAGCAGCAT
CATGTGAGGTCAGTGGTGCCCCCTTACACACCAGAAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAGGAGGAAGAGGAGG
AGGAGGAGGAGGATCGACGGTAGATGAAGACTAATTACGAGGAAACCCTG
AAAAGGCTGCGAGAGAAACAAGCTGGAGGCTATGACATAGCAGCCATATT
TGGGGTCAAGGCACCATCCAACTCCTCTTCTGCCGCTGGCAAACAGGCCG
TGCAGGGAGGAGGGGGAGGAGGAGGAGGGGGTGGCAGTGGCGGCGCGCAT
GCACATCTACAAAAACAGTCAGCCCCTAGTGGAGGAGGAAGAAGTGGAGG
AGGAGGGTTGGGGGCATCGTCCTCCATCTCCACCTCCTCCATTCAGTCCC
TCAAGATCCTGCAAGGATTCGTCAGTGGCCAAGCACCCCGTCCTCCCCCT
CCCCCTCCTCCTTCGTCGTCAACCCCGTCATCTTCTTCAAGTAGTCGAAG
GCCTCAGGAATCTGCTGATGGAGGGGGAGAAGGGACGGGAAGCGGAGGAG
GGTATCAACCACGGCCACCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCGATCACCATTACAGGAGTTGCGAGTTGG
AGGAGGAGGAGGATTAGGAGGAAAGGAGGGAGGATGGAGTAGTGGAGAGT
ACGTGAAGCTGCAACAGCAGCATCATGTGAGGTCAGTGGTGCCCCCTTAC
ACACCAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGAGGAGGAAGAGGAGGAGGAGGAGGAGGATCGACGGTAGATGA
AGACTAATTACGAGGAAACCCTGAAAAGGCTGCGAGAGAAACAAGCTGGA
GGCTATGACATAGCAGCCATATTTGGGGTCAAGGCACCATCCAACTCCTC
TTCTGCCGCTGGCAAACAGGCCGTGCAGGGAGGAGGGGGAGGAGGAGGAG
GGGGTGGCAGTGGCGGCGCGCATGCACATCTACAAAAACAGTCAGCCCCT
AGTGGAGGAGGAAGAAGTGGAGGAGGAGGGTTGGGGGCATCGTCCTCCAT
CTCCACCTCCTCCATTCAGTCCCTCAAGATCCTGCAAGGATTCGTCAGTG
GCCAAGCACCCCGTCCTCCCCCTCCCCCTCCTCCTTCGTCGTCAACCCCG
TCATCTTCTTCAAGTAGTCGAAGGCCTCAGGAATCTGCTGATGGAGGGGG
AGAAGGGACGGGAAGCGGAGGAGGGTATCAACCACGGCCACCGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGATCA
CCATTACAGGAGTTGCGAGTTGGAGGAGGAGGAGGATTAGGAGGAAAGGA
GGGAGGATGGAGTAGTGGAGAGTACGTGAAGCTGCAACAGCAGCATCATG
TGAGGTCAGTGGTGCCCCCTTACACACCAGAAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAGGAGGAAGAGGAGGAGGA
GGAGGAGGATCGACGGTAGATGAAGACTAATTACGAGGAAACCCTGAAAA
GGCTGCGAGAGAAACAAGCTGGAGGCTATGACATAGCAGCCATATTTGGG
GTCAAGGCACCATCCAACTCCTCTTCTGCCGCTGGCAAACAGGCCGTGCA
GGGAGGAGGGGGAGGAGGAGGAGGGGGTGGCAGTGGCGGCGCGCATGCAC
ATCTACAAAAACAGTCAGCCCCTAGTGGAGGAGGAAGAAGTGGAGGAGGA
GGGTTGGGGGCATCGTCCTCCATCTCCACCTCCTCCATTCAGTCCCTCAA
GATCCTGCAAGGATTCGTCAGTGGCCAAGCACCCCGTCCTCCCCCTCCCC
CTCCTCCTTCGTCGTCAACCCCGTCATCTTCTTCAAGTAGTCGAAGGCCT
CAGGAATCTGCTGATGGAGGGGGAGAAGGGACGGGAAGCGGAGGAGGGTA
TCAACCACGGCCACCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCGATCACCATTACAGGAGTTGCGAGTTGGAGGA
GGAGGAGGATTAGGAGGAAAGGAGGGAGGATGGAGTAGTGGAGAGTACGT
GAAGCTGCAACAGCAGCATCATGTGAGGTCAGTGGTGCCCCCTTACACAC
CAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGAGGAGGAAGAGGAGGAGGAGGAGGAGGATCGACGGTAG

Synonyms

Publications