jgi.p|Nanoce1779_2|610231, mRNA_9959 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|610231
Unique Name	mRNA_9959
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1176
Alignment location	scaffold_49:23875..25313 -

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Properties


Property Name	Value
TranscriptId	610317
Track	FilteredModels2
ProteinId	610231

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_49	supercontig	scaffold_49:23875..25313 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|610231	gene_9959	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|610231	mRNA_9959-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9959	CDS_9959	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_49:23875..25313-
coding sequence from alignment at scaffold_49:23875..25313-

mRNA sequence

>mRNA_9959 ID=mRNA_9959|Name=jgi.p|Nanoce1779_2|610231|organism=Nannochloropsis oceanica|type=mRNA|length=1176bp
GGAAACCGGGGATGGTGTAAATCTCGAGCGATGCCAGCGACTGTTCTTCT
GGAGCGCAATGCAACGCATCCTTATCGCGCTACCCGTTATGCGCCTTAGG
CGAATATTACCGGGCACCACGATGCAATACCCTTACAATACATGTGCCAG
CCGCAATCGATTGTGCATTCAACTCATGTCTTAACGCTGACCTTGATTCG
TCCATTCGTATGCAGGCACAGACAACTGTCTCACTACTATCGCCCGGTGA
TCGTCATCAGCTTCTTCCTCGCCTTCCTACGTCCCACGCGCAGCCCACAC
CACGCACCACACCCACGCCACCCTTCACGCCCGCTGCACATCAACCATGA
CTATTCTCTACGGCCTCATCGCCCGGGGCAAGGACGTTCTCAGCGAGTTC
ACGGCCGTCTCTGGCAACTTTCCCACCATCACACGCCTTCTTTTGGGGAA
AATCCCGCGGGACCAAGAGGGCAAGCGCAGTTATGTCTACGACGCCCACG
TCTTCCACTACCTTGTGTCGGACGGTTTGACTTACTTATGCATGACCGAT
GACCCGCATCAGCAGCGTTTTCGCGCGCCCTTTGCTTATTTGGATGACAT
TCAAAACCGGTTCCTGTCCATGTATGGCCGCGAACGCGCACAGACGGCAT
TCGCTTTTGCGATGAACGAGGAGTTTTCCCGGATCCTACAGCGGCAGATG
GACTTTTTCAACAGTCCTGATGCCAGCGCCGCGAGTGTCTTGCAAGCCAA
ATTGGACGACGTACGAAATGTCATGGTTTCCAATGTGGACTTGGTCTTGG
AGCGAGGCGAGAAGTTGGAGTTACTGGTTGACAAGACGGCGGACCTGCAG
CATAGTGCCTTTAAGTTTGAGCGCTCGTCGCGGCAGTTGCGGCATGAGAT
GCTGTGGCGCAGGATTCGGTGTTACGGGCTCGTTGCTGTAGGGATCGGAT
TGCTGTTGTTTTTCATTTTTGCCACGGCCTGTGGCTTTGATTTCAAAGGG
TGTGGGAAAGGGTAGTCATTAGTGCACGATTTATTACAAATTGCTCGGTC
TGTAAATACTGGTAGAGACGACATGTGTATGTATAGCATCAGCTTCCTCT
TGCCTTTGTGCTTGCTTGAGACATGAAAAGCATGTACGGTCTCATTGGAA
AGAAAAAATTTTGAACTGAATGCAGT

protein sequence of jgi.p|Nanoce1779_2|610231

>mRNA_9959-protein ID=mRNA_9959-protein|Name=jgi.p|Nanoce1779_2|610231|organism=Nannochloropsis oceanica|type=polypeptide|length=223bp
MTILYGLIARGKDVLSEFTAVSGNFPTITRLLLGKIPRDQEGKRSYVYDA
HVFHYLVSDGLTYLCMTDDPHQQRFRAPFAYLDDIQNRFLSMYGRERAQT
AFAFAMNEEFSRILQRQMDFFNSPDASAASVLQAKLDDVRNVMVSNVDLV
LERGEKLELLVDKTADLQHSAFKFERSSRQLRHEMLWRRIRCYGLVAVGI
GLLLFFIFATACGFDFKGCGKG*

mRNA from alignment at scaffold_49:23875..25313-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9959 ID=mRNA_9959|Name=jgi.p|Nanoce1779_2|610231|organism=Nannochloropsis oceanica|type=mRNA|length=1439bp|location=Sequence derived from alignment at scaffold_49:23875..25313- (Nannochloropsis oceanica)
GGAAACCGGGGATGGTGTAAATCTCGAGCGATGCCAGCGACTGTTCTTCT
GGAGCGCAATGCAACGCATCCTTATCGCGCTACCCGTTATGCGCCTTAGG
CGAATATTACCGGGCACCACGATGCAATACCCTTACAATACATGTGCCAG
CCGCAATCGATTGTGCATTCAACTCATGTCTTAACGCTGACCTTGATTCG
TCCATTCGTATGCAGGCACAGACAACTGTCTCACTACTATCGCCCGGTGA
TCGTCATCAGCTTCTTCCTCGCCTTCCTACGTCCCACGCGCAGCCCACAC
CACGCACCACACCCACGCCACCCTTCACGCCCGCTGCACATCAACCATGA
CTATTGTAAGTACCTACCCTCCGTGTCCCCTTTTCCCGCTGCCGGCTAGC
ACACGTCCCCTCCTTCCTGAGGATGGCACCTGGGGCTCCGCTTATGTCTC
TCTTGTCTCTTTCTAAACGAGGTCACTTATGTCGCATTCACGCAGCACAG
CATGTCCATCCGCATGCATCATGTACTCTCGCTCCGTCTTTCCATCCTTC
ACGCAAATAAATGATGTCATCACACCCTCATTTCCCCTCAACTCACCACC
ATCCCCTGTCTTCACAAGCTCTACGGCCTCATCGCCCGGGGCAAGGACGT
TCTCAGCGAGTTCACGGCCGTCTCTGGCAACTTTCCCACCATCACACGCC
TTCTTTTGGGGAAAATCCCGCGGGACCAAGAGGGCAAGCGCAGTTATGTC
TACGACGCCCACGTCTTCCACTACCTTGTGTCGGACGGTTTGACTTACTT
ATGCATGACCGATGACCCGCATCAGCAGCGTTTTCGCGCGCCCTTTGCTT
ATTTGGATGACATTCAAAACCGGTTCCTGTCCATGTATGGCCGCGAACGC
GCACAGACGGCATTCGCTTTTGCGATGAACGAGGAGTTTTCCCGGATCCT
ACAGCGGCAGATGGACTTTTTCAACAGTCCTGATGCCAGCGCCGCGAGTG
TCTTGCAAGCCAAATTGGACGACGTACGAAATGTCATGGTTTCCAATGTG
GACTTGGTCTTGGAGCGAGGCGAGAAGTTGGAGTTACTGGTTGACAAGAC
GGCGGACCTGCAGCATAGTGCCTTTAAGTTTGAGCGCTCGTCGCGGCAGT
TGCGGCATGAGATGCTGTGGCGCAGGATTCGGTGTTACGGGCTCGTTGCT
GTAGGGATCGGATTGCTGTTGTTTTTCATTTTTGCCACGGCCTGTGGCTT
TGATTTCAAAGGGTGTGGGAAAGGGTAGTCATTAGTGCACGATTTATTAC
AAATTGCTCGGTCTGTAAATACTGGTAGAGACGACATGTGTATGTATAGC
ATCAGCTTCCTCTTGCCTTTGTGCTTGCTTGAGACATGAAAAGCATGTAC
GGTCTCATTGGAAAGAAAAAATTTTGAACTGAATGCAGT

Coding sequence (CDS) from alignment at scaffold_49:23875..25313-

>mRNA_9959 ID=mRNA_9959|Name=jgi.p|Nanoce1779_2|610231|organism=Nannochloropsis oceanica|type=CDS|length=1338bp|location=Sequence derived from alignment at scaffold_49:23875..25313- (Nannochloropsis oceanica)
CTCTACGGCCTCATCGCCCGGGGCAAGGACGTTCTCAGCGAGTTCACGGC
CGTCTCTGGCAACTTTCCCACCATCACACGCCTTCTTTTGGGGAAAATCC
CGCGGGACCAAGAGGGCAAGCGCAGTTATGTCTACGACGCCCACGTCTTC
CACTACCTTGTGTCGGACGGTTTGACTTACTTATGCATGACCGATGACCC
GCATCAGCAGCGTTTTCGCGCGCCCTTTGCTTATTTGGATGACATTCAAA
ACCGGTTCCTGTCCATGTATGGCCGCGAACGCGCACAGACGGCATTCGCT
TTTGCGATGAACGAGGAGTTTTCCCGGATCCTACAGCGGCAGATGGACTT
TTTCAACAGTCCTGATGCCAGCGCCGCGAGTGTCTTGCAAGCCAAATTGG
ACGACGTACGAAATGTCATGGTTTCCAATGTGGACTTGGTCTTGGAGCGA
GGCGAGAAGTTGGAGTTACTGGTTGACAAGACGGCGGACCTGCAGCATAG
TGCCTTTAAGTTTGAGCGCTCGTCGCGGCAGTTGCGGCATGAGATGCTGT
GGCGCAGGATTCGGTGTTACGGGCTCGTTGCTGTAGGGATCGGATTGCTG
TTGTTTTTCATTTTTGCCACGGCCTGTGGCTTTGATTTCAAAGGGTGTGG
GAAAGGGTAGATGACTATTCTCTACGGCCTCATCGCCCGGGGCAAGGACG
TTCTCAGCGAGTTCACGGCCGTCTCTGGCAACTTTCCCACCATCACACGC
CTTCTTTTGGGGAAAATCCCGCGGGACCAAGAGGGCAAGCGCAGTTATGT
CTACGACGCCCACGTCTTCCACTACCTTGTGTCGGACGGTTTGACTTACT
TATGCATGACCGATGACCCGCATCAGCAGCGTTTTCGCGCGCCCTTTGCT
TATTTGGATGACATTCAAAACCGGTTCCTGTCCATGTATGGCCGCGAACG
CGCACAGACGGCATTCGCTTTTGCGATGAACGAGGAGTTTTCCCGGATCC
TACAGCGGCAGATGGACTTTTTCAACAGTCCTGATGCCAGCGCCGCGAGT
GTCTTGCAAGCCAAATTGGACGACGTACGAAATGTCATGGTTTCCAATGT
GGACTTGGTCTTGGAGCGAGGCGAGAAGTTGGAGTTACTGGTTGACAAGA
CGGCGGACCTGCAGCATAGTGCCTTTAAGTTTGAGCGCTCGTCGCGGCAG
TTGCGGCATGAGATGCTGTGGCGCAGGATTCGGTGTTACGGGCTCGTTGC
TGTAGGGATCGGATTGCTGTTGTTTTTCATTTTTGCCACGGCCTGTGGCT
TTGATTTCAAAGGGTGTGGGAAAGGGTAGATGACTATT

Synonyms

Publications