jgi.p|Nanoce1779_2|626400, mRNA_9958 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|626400
Unique Name	mRNA_9958
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1831
Alignment location	scaffold_49:20307..22387 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	626486
Track	FilteredModels2
ProteinId	626400

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_49	supercontig	scaffold_49:20307..22387 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|626400	gene_9958	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|626400	mRNA_9958-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9958	CDS_9958	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_49:20307..22387-
coding sequence from alignment at scaffold_49:20307..22387-

mRNA sequence

>mRNA_9958 ID=mRNA_9958|Name=jgi.p|Nanoce1779_2|626400|organism=Nannochloropsis oceanica|type=mRNA|length=1831bp
GGGGGAGGATGATTATAACTATGACTCTGATGCCGAAGTGTACGCAGCAG
GGGCAGCTGCAGAAGCGGCAGCCGCCAAGAAAAGCGAGGGCAGCGAGGGG
GGCGTTGGAGTGTTGGGGCTGGAACCTGGCAAGAAGTATAGTCGCATGGG
GCCGGAAGGGAAGAAGGCGATGGAGGTCCTCCCGCCATTGGACCACGCGA
GCATTGACTACCCGCCGTTCCGCAAGTGCTTTTACGAGGAGCACCCGGAC
GTAACTGAAATGGACTGGGAGGAGATGCTGCGTTATCGAGAAGAAGAATT
ACAAGTACAGGTGGAAGGCCGCGAGAGCTGTCGGCCTATTGTATCGTTCA
AGCACGCCACTGGCTTTTCCGAGATACTGCTCCGCGAAATCGTCAAGAGG
GGGTTTGAGGCCCCGACGCCGATCCAGGCTCAAGCCCTTCCCCTCGCCCT
CGCGGGTCGCGACGTCCTCGGCATCGCTCAAACAGGGAGTGGGAAAACCC
TGGCATTTGTCTGGCCGGCAATCGTACACTTGATGGACCAACCACACATT
CAACGAGGGGACGGGCCGATCGTTCTTATATTGGCACCGACACGCGAACT
CGCCTCCCAGATCTATGTCGAAGCTACCAAGTTCTCCAAGCCGCACGGCG
CCAAAGCTGCCGCCATCTTCGGCGGGGCGGGAAAATGGGAACAGACAAAG
CTGTTGAAAGAAGGCGTGGAAATCCTCGTGGCGACCCCTGGGCGCTTACT
CGAATTGCTCAAGACGAAAGCCACAAACCTCAAGAGGTGCACGATGTTGG
TACTTGACGAAGCCGATCGTATGTTCGACCTCGGTTTTGAAGCACAGCTT
CATTCTGTCCTGGGCCAAATCAGACCTGATCGACAGACACTTCTCTTCTC
CGCGACCTTTAAACGCAAAGTAGAAAAATTGGCGAATGAAGTGTTGCAGG
ACCCAGTGCGCGTGGTCTGTGGGAAGGCAGGACAGGCCAACGAGGACGTG
ACGCAGGAAGTCGTCGTGCTCCCGAACGAGGAGGCTAAATATCAGTGGCT
CGCACACTGTCTTCCGGGGCTGGTGAGGGAGGGGAAGGTGCTTGTCTTTG
TGTCGAGCAAGCAGGGCTGCGAGGATTTGGCGGGAAGACTGACGATCCTA
CTGCAGGCTGACGCGCGTGCTTCATCCCTCCCTCCTTGGAAGGTGGAGGC
ATTACATGGTGATAAAGACCAACACGAGCGATCCCTAATTATGCGTCGAT
TCAAGCAGCAGCAGCAGCAGCAGCAACAACAACAGGGGGGGGATGGGGGG
AAGGAGGACGGGGCTTGTCGCGTGCTGGTGGCTACAGATGTGGCATCGCG
CGGACTGGACATTAAAGACATTCGAAATGTAATCAATTTTGACATGGCTC
GCAATATGGAAGCGCACGTGCATAGGTGTGGAAGGACAGGGCGGATGACG
GTGGAGGGAGGGAGGGAAGGAGGGAAGGCTTTCACGCTGTTGACGCCACG
GGACTCGGGAATGGCAGGGGAGATGGTGAAGGGGTTAGAAGGCGCAAGGC
AGAAGGTGCCGGCGGCATTGAGGGCCATGCAGCATGAATACCACACAGTT
GCAGATAGAGGAGAAGGGGGGGGGACGGGAGGAAGAGGAGGAGGTGGGAG
CGCACAGCAGGGCCAGGCGCCTGTGGAGGGTGACAGGAAGAGGAAGAGCA
GGTGGGGATGAGGGTTGTGCATTCGTTCAAAAGGCTAAGCGGAAGGGGGT
AAGAGCCGGAATCTTGTATGTACAGACCCGTGCGTACGGTAAGATAGAGT
AAAACATGAAAGCAATCCAACCTGGACACCC

protein sequence of jgi.p|Nanoce1779_2|626400

>mRNA_9958-protein ID=mRNA_9958-protein|Name=jgi.p|Nanoce1779_2|626400|organism=Nannochloropsis oceanica|type=polypeptide|length=522bp
MGPEGKKAMEVLPPLDHASIDYPPFRKCFYEEHPDVTEMDWEEMLRYREE
ELQVQVEGRESCRPIVSFKHATGFSEILLREIVKRGFEAPTPIQAQALPL
ALAGRDVLGIAQTGSGKTLAFVWPAIVHLMDQPHIQRGDGPIVLILAPTR
ELASQIYVEATKFSKPHGAKAAAIFGGAGKWEQTKLLKEGVEILVATPGR
LLELLKTKATNLKRCTMLVLDEADRMFDLGFEAQLHSVLGQIRPDRQTLL
FSATFKRKVEKLANEVLQDPVRVVCGKAGQANEDVTQEVVVLPNEEAKYQ
WLAHCLPGLVREGKVLVFVSSKQGCEDLAGRLTILLQADARASSLPPWKV
EALHGDKDQHERSLIMRRFKQQQQQQQQQQGGDGGKEDGACRVLVATDVA
SRGLDIKDIRNVINFDMARNMEAHVHRCGRTGRMTVEGGREGGKAFTLLT
PRDSGMAGEMVKGLEGARQKVPAALRAMQHEYHTVADRGEGGGTGGRGGG
GSAQQGQAPVEGDRKRKSRWG*

mRNA from alignment at scaffold_49:20307..22387-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9958 ID=mRNA_9958|Name=jgi.p|Nanoce1779_2|626400|organism=Nannochloropsis oceanica|type=mRNA|length=2081bp|location=Sequence derived from alignment at scaffold_49:20307..22387- (Nannochloropsis oceanica)
GGGGGAGGATGATTATAACTATGACTCTGATGCCGAAGTGTACGCAGCAG
GGGCAGCTGCAGAAGCGGCAGCCGCCAAGAAAAGCGAGGGCAGCGAGGGG
GGCGTTGGAGTGTTGGGGCTGGAACCTGGCAAGAAGTATAGTCGCATGGG
GCCGGAAGGGAAGAAGGCGATGGAGGTCCTCCCGCCATTGGACCACGCGA
GCATTGACTACCCGCCGTTCCGCAAGTGCTTTTACGAGGAGCACCCGGAC
GTAACTGAAATGGACTGGGAGGAGATGCTGCGTTATCGAGAAGAAGAATT
ACAAGTACAGGTGGAAGGCCGCGAGAGCTGTCGGCCTATTGTATCGTTCA
AGCACGCCACTGGCTTTTCCGAGATACTGCTCCGCGAAATCGTCAAGAGG
GGGTTTGAGGCCCCGACGCCGATCCAGGCTCAAGCCCTTCCCCTCGCCCT
CGCGGGTCGCGACGTCCTCGGCATCGCTCAAACAGGGAGTGGGAAAACCC
TGGCATTTGTCTGGCCGGCAATCGTACACTTGATGGACCAACCACACATT
CAACGAGGGGACGGGCCGATCGTTCTTATATTGGCACCGACACGCGAACT
CGCCTCCCAGATCTATGTCGAAGCTACCAAGTTCTCCAAGCCGCACGGCG
CCAAAGCTGCCGCCATCTTCGGCGGGGCGGGAAAATGGGAACAGACAAAG
CTGTTGAAAGAAGGCGTGGAAATCCTCGTGGCGACCCCTGGGCGCTTACT
CGAATTGCTCAAGACGAAAGCCACAAACCTCAAGAGGTGCACGATGTTGG
TACTTGACGAAGCCGATCGTATGTTCGACCTCGGTTTTGAAGCACAGCTT
CATTCTGTCCTGGGCCAAATCAGACCTGATCGACAGACACTTCTCTTCTC
CGCGACCTTTAAACGCAAAGTAGAAAAATTGGCGAATGAAGTGTTGCAGG
ACCCAGTGCGCGTGGTCTGTGGGAAGGCAGGACAGGCCAACGAGGACGTG
ACGCAGGAAGTCGTCGTGCTCCCGAACGAGGAGGCTAAATATCAGTGGCT
CGCACACTGTCTTCCGGGGCTGGTGAGGGAGGGGAAGGTGCTTGTCTTTG
TGTCGAGCAAGCAGGGCTGCGAGGATTTGGCGGGAAGACTGACGATCCTA
CTGCAGGCTGACGCGCGTGCTTCATCCCTCCCTCCTTGGAAGGTGGAGGC
ATTACATGGTGATAAAGACCAACACGAGCGATCCCTAATTATGCGTCGAT
TCAAGCAGCAGCAGCAGCAGCAGCAACAACAACAGGGGGGGGATGGGGGG
AAGGAGGACGGGGCTTGTCGCGTGCTGGTGGCTACAGATGTGGCATCGCG
CGGACTGGACATTAAAGACATTCGAAATGTAATCAATTTTGACATGGCTC
GCAATATGGAAGCGCACGTGCATAGGTGTGGAAGGACAGGGCGGATGACG
GTGGAGGGAGGGAGGGAAGGAGGGAAGGCTTTCACGCTGTTGACGCCACG
GGACTCGGGAATGGCAGGGGAGATGGTGAAGGGGTTAGAAGGCGCAAGGC
AGAAGGTGCCGGCGGCATTGAGGGCCATGGTGATAGGAGGAGTAGGAGGA
GGGAGGGGAAGAGGAGGAGGGAGTGGGCGAGGGGGTGGTTGGAACGGAGG
AGGTGGAGGAGGAGGACGTGGGCGGGGGGGGGGGAGGGAGGAGTGGTGCG
GGGCCGGGACATCATGTGGTTCCCCCGCCGGCCTCTTACAAGTCAACCAG
TGGGATAGGTTTTGGAGGAGGAGGGGGAGGAGGAGGAGGGGGAGGTTTGA
TGGGAGGGATGTCCTTGTTTATTCGACAGCAGCATGAATACCACACAGTT
GCAGATAGAGGAGAAGGGGGGGGGACGGGAGGAAGAGGAGGAGGTGGGAG
CGCACAGCAGGGCCAGGCGCCTGTGGAGGGTGACAGGAAGAGGAAGAGCA
GGTGGGGATGAGGGTTGTGCATTCGTTCAAAAGGCTAAGCGGAAGGGGGT
AAGAGCCGGAATCTTGTATGTACAGACCCGTGCGTACGGTAAGATAGAGT
AAAACATGAAAGCAATCCAACCTGGACACCC

Coding sequence (CDS) from alignment at scaffold_49:20307..22387-

>mRNA_9958 ID=mRNA_9958|Name=jgi.p|Nanoce1779_2|626400|organism=Nannochloropsis oceanica|type=CDS|length=3132bp|location=Sequence derived from alignment at scaffold_49:20307..22387- (Nannochloropsis oceanica)
CAGCATGAATACCACACAGTTGCAGATAGAGGAGAAGGGGGGGGGACGGG
AGGAAGAGGAGGAGGTGGGAGCGCACAGCAGGGCCAGGCGCCTGTGGAGG
GTGACAGGAAGAGGAAGAGCAGGTGGGGATGAATGGGGCCGGAAGGGAAG
AAGGCGATGGAGGTCCTCCCGCCATTGGACCACGCGAGCATTGACTACCC
GCCGTTCCGCAAGTGCTTTTACGAGGAGCACCCGGACGTAACTGAAATGG
ACTGGGAGGAGATGCTGCGTTATCGAGAAGAAGAATTACAAGTACAGGTG
GAAGGCCGCGAGAGCTGTCGGCCTATTGTATCGTTCAAGCACGCCACTGG
CTTTTCCGAGATACTGCTCCGCGAAATCGTCAAGAGGGGGTTTGAGGCCC
CGACGCCGATCCAGGCTCAAGCCCTTCCCCTCGCCCTCGCGGGTCGCGAC
GTCCTCGGCATCGCTCAAACAGGGAGTGGGAAAACCCTGGCATTTGTCTG
GCCGGCAATCGTACACTTGATGGACCAACCACACATTCAACGAGGGGACG
GGCCGATCGTTCTTATATTGGCACCGACACGCGAACTCGCCTCCCAGATC
TATGTCGAAGCTACCAAGTTCTCCAAGCCGCACGGCGCCAAAGCTGCCGC
CATCTTCGGCGGGGCGGGAAAATGGGAACAGACAAAGCTGTTGAAAGAAG
GCGTGGAAATCCTCGTGGCGACCCCTGGGCGCTTACTCGAATTGCTCAAG
ACGAAAGCCACAAACCTCAAGAGGTGCACGATGTTGGTACTTGACGAAGC
CGATCGTATGTTCGACCTCGGTTTTGAAGCACAGCTTCATTCTGTCCTGG
GCCAAATCAGACCTGATCGACAGACACTTCTCTTCTCCGCGACCTTTAAA
CGCAAAGTAGAAAAATTGGCGAATGAAGTGTTGCAGGACCCAGTGCGCGT
GGTCTGTGGGAAGGCAGGACAGGCCAACGAGGACGTGACGCAGGAAGTCG
TCGTGCTCCCGAACGAGGAGGCTAAATATCAGTGGCTCGCACACTGTCTT
CCGGGGCTGGTGAGGGAGGGGAAGGTGCTTGTCTTTGTGTCGAGCAAGCA
GGGCTGCGAGGATTTGGCGGGAAGACTGACGATCCTACTGCAGGCTGACG
CGCGTGCTTCATCCCTCCCTCCTTGGAAGGTGGAGGCATTACATGGTGAT
AAAGACCAACACGAGCGATCCCTAATTATGCGTCGATTCAAGCAGCAGCA
GCAGCAGCAGCAACAACAACAGGGGGGGGATGGGGGGAAGGAGGACGGGG
CTTGTCGCGTGCTGGTGGCTACAGATGTGGCATCGCGCGGACTGGACATT
AAAGACATTCGAAATGTAATCAATTTTGACATGGCTCGCAATATGGAAGC
GCACGTGCATAGGTGTGGAAGGACAGGGCGGATGACGGTGGAGGGAGGGA
GGGAAGGAGGGAAGGCTTTCACGCTGTTGACGCCACGGGACTCGGGAATG
GCAGGGGAGATGGTGAAGGGGTTAGAAGGCGCAAGGCAGAAGGTGCCGGC
GGCATTGAGGGCCATGCAGCATGAATACCACACAGTTGCAGATAGAGGAG
AAGGGGGGGGGACGGGAGGAAGAGGAGGAGGTGGGAGCGCACAGCAGGGC
CAGGCGCCTGTGGAGGGTGACAGGAAGAGGAAGAGCAGGTGGGGATGAAT
GGGGCCGGAAGGGAAGAAGGCGATGGAGGTCCTCCCGCCATTGGACCACG
CGAGCATTGACTACCCGCCGTTCCGCAAGTGCTTTTACGAGGAGCACCCG
GACGTAACTGAAATGGACTGGGAGGAGATGCTGCGTTATCGAGAAGAAGA
ATTACAAGTACAGGTGGAAGGCCGCGAGAGCTGTCGGCCTATTGTATCGT
TCAAGCACGCCACTGGCTTTTCCGAGATACTGCTCCGCGAAATCGTCAAG
AGGGGGTTTGAGGCCCCGACGCCGATCCAGGCTCAAGCCCTTCCCCTCGC
CCTCGCGGGTCGCGACGTCCTCGGCATCGCTCAAACAGGGAGTGGGAAAA
CCCTGGCATTTGTCTGGCCGGCAATCGTACACTTGATGGACCAACCACAC
ATTCAACGAGGGGACGGGCCGATCGTTCTTATATTGGCACCGACACGCGA
ACTCGCCTCCCAGATCTATGTCGAAGCTACCAAGTTCTCCAAGCCGCACG
GCGCCAAAGCTGCCGCCATCTTCGGCGGGGCGGGAAAATGGGAACAGACA
AAGCTGTTGAAAGAAGGCGTGGAAATCCTCGTGGCGACCCCTGGGCGCTT
ACTCGAATTGCTCAAGACGAAAGCCACAAACCTCAAGAGGTGCACGATGT
TGGTACTTGACGAAGCCGATCGTATGTTCGACCTCGGTTTTGAAGCACAG
CTTCATTCTGTCCTGGGCCAAATCAGACCTGATCGACAGACACTTCTCTT
CTCCGCGACCTTTAAACGCAAAGTAGAAAAATTGGCGAATGAAGTGTTGC
AGGACCCAGTGCGCGTGGTCTGTGGGAAGGCAGGACAGGCCAACGAGGAC
GTGACGCAGGAAGTCGTCGTGCTCCCGAACGAGGAGGCTAAATATCAGTG
GCTCGCACACTGTCTTCCGGGGCTGGTGAGGGAGGGGAAGGTGCTTGTCT
TTGTGTCGAGCAAGCAGGGCTGCGAGGATTTGGCGGGAAGACTGACGATC
CTACTGCAGGCTGACGCGCGTGCTTCATCCCTCCCTCCTTGGAAGGTGGA
GGCATTACATGGTGATAAAGACCAACACGAGCGATCCCTAATTATGCGTC
GATTCAAGCAGCAGCAGCAGCAGCAGCAACAACAACAGGGGGGGGATGGG
GGGAAGGAGGACGGGGCTTGTCGCGTGCTGGTGGCTACAGATGTGGCATC
GCGCGGACTGGACATTAAAGACATTCGAAATGTAATCAATTTTGACATGG
CTCGCAATATGGAAGCGCACGTGCATAGGTGTGGAAGGACAGGGCGGATG
ACGGTGGAGGGAGGGAGGGAAGGAGGGAAGGCTTTCACGCTGTTGACGCC
ACGGGACTCGGGAATGGCAGGGGAGATGGTGAAGGGGTTAGAAGGCGCAA
GGCAGAAGGTGCCGGCGGCATTGAGGGCCATG

Synonyms

Publications