jgi.p|Nanoce1779_2|533871, mRNA_9957 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|533871
Unique NamemRNA_9957
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length924
Alignment locationscaffold_49:19325..20248 +

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Properties
Property NameValue
TranscriptId533957
TrackFilteredModels2
ProteinId533871
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:19325..20248 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|533871gene_9957Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|533871mRNA_9957-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9957CDS_9957Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9957 ID=mRNA_9957|Name=jgi.p|Nanoce1779_2|533871|organism=Nannochloropsis oceanica|type=mRNA|length=924bp
ATGCTCGCCTCTTCCGAACCACCACCAACACCATTTCAAGAACAACAAGT
AATTTTTAAGCTGGCCTTGCTTCCCCACGCAATGGAAGACATGGAGCAGC
ACGTACGCAGCAAGCTGCACACGCTCCTCATGAAATATAATGAAGACGCC
GGCGGGGTTTTGCTCGCAATCTACCATATCCGTCAACCGCCTGCGCGTCG
GTTTGCGACCATTTTGCATGACCTACCCTTTTTGCATGTGCAGGTGGAGG
CAATGGCTTTGGTGTTCACCCCAACACCGGGGAGTGTCGTGACAGGGGAG
GTTATAAAAGTGACAGGCACGCACGTGGCATTGTTGGTCTATGGGCTATT
TAATGCGGCCATTGCCAGGGAGGATATGCCGGATGCTTTTGAGTATGTGA
GTGGACGGGGGGAGTGGGTGTGTAATGGAGGAGAAGGAAGGAGTGAGGGA
AGGTTCGCTCTGGGGGAGCAGGTGAAATTTCGCGTGGTTAGGGTGCACGA
GGCGGCGGGGTTGCTCGCTTTGGATGGGTCGATGCGTGAGAAGGGAGAGG
AACCGCGGGAATCGGTGTACGGGCACCATCATTATCATCATCATCATCAT
CATCATCAGCAGCAGCAGCAGCAGCAACAACAGCATGAGGAGGGAGAGGA
GGGGGAGAGAGAAGGAGGAGGATGGAGATATGGACGTCAAAAAGAGCAGC
GGCCGCAATACGAGGAGGATGTGAGAGAGGAAGAAATACAGCAGCAGATC
GGGAAGCGAAAGGCAGGGGGAACTCACGATCAAGGCGAGAAGAAGGCAAA
GAAGCAGAAGAAGGAAAAGGACGACAGGGAGGGCCGGGGGAAGGAGACGG
ACAAGGAGAAGCACAAGTCGAAGAAAAAGGATAAGAATAGGTCTCGCAAC
GTAGGGGGAGACAGCAGTGACTAG
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protein sequence of jgi.p|Nanoce1779_2|533871

>mRNA_9957-protein ID=mRNA_9957-protein|Name=jgi.p|Nanoce1779_2|533871|organism=Nannochloropsis oceanica|type=polypeptide|length=308bp
MLASSEPPPTPFQEQQVIFKLALLPHAMEDMEQHVRSKLHTLLMKYNEDA
GGVLLAIYHIRQPPARRFATILHDLPFLHVQVEAMALVFTPTPGSVVTGE
VIKVTGTHVALLVYGLFNAAIAREDMPDAFEYVSGRGEWVCNGGEGRSEG
RFALGEQVKFRVVRVHEAAGLLALDGSMREKGEEPRESVYGHHHYHHHHH
HHQQQQQQQQQHEEGEEGEREGGGWRYGRQKEQRPQYEEDVREEEIQQQI
GKRKAGGTHDQGEKKAKKQKKEKDDREGRGKETDKEKHKSKKKDKNRSRN
VGGDSSD*
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mRNA from alignment at scaffold_49:19325..20248+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9957 ID=mRNA_9957|Name=jgi.p|Nanoce1779_2|533871|organism=Nannochloropsis oceanica|type=mRNA|length=924bp|location=Sequence derived from alignment at scaffold_49:19325..20248+ (Nannochloropsis oceanica)
ATGCTCGCCTCTTCCGAACCACCACCAACACCATTTCAAGAACAACAAGT
AATTTTTAAGCTGGCCTTGCTTCCCCACGCAATGGAAGACATGGAGCAGC
ACGTACGCAGCAAGCTGCACACGCTCCTCATGAAATATAATGAAGACGCC
GGCGGGGTTTTGCTCGCAATCTACCATATCCGTCAACCGCCTGCGCGTCG
GTTTGCGACCATTTTGCATGACCTACCCTTTTTGCATGTGCAGGTGGAGG
CAATGGCTTTGGTGTTCACCCCAACACCGGGGAGTGTCGTGACAGGGGAG
GTTATAAAAGTGACAGGCACGCACGTGGCATTGTTGGTCTATGGGCTATT
TAATGCGGCCATTGCCAGGGAGGATATGCCGGATGCTTTTGAGTATGTGA
GTGGACGGGGGGAGTGGGTGTGTAATGGAGGAGAAGGAAGGAGTGAGGGA
AGGTTCGCTCTGGGGGAGCAGGTGAAATTTCGCGTGGTTAGGGTGCACGA
GGCGGCGGGGTTGCTCGCTTTGGATGGGTCGATGCGTGAGAAGGGAGAGG
AACCGCGGGAATCGGTGTACGGGCACCATCATTATCATCATCATCATCAT
CATCATCAGCAGCAGCAGCAGCAGCAACAACAGCATGAGGAGGGAGAGGA
GGGGGAGAGAGAAGGAGGAGGATGGAGATATGGACGTCAAAAAGAGCAGC
GGCCGCAATACGAGGAGGATGTGAGAGAGGAAGAAATACAGCAGCAGATC
GGGAAGCGAAAGGCAGGGGGAACTCACGATCAAGGCGAGAAGAAGGCAAA
GAAGCAGAAGAAGGAAAAGGACGACAGGGAGGGCCGGGGGAAGGAGACGG
ACAAGGAGAAGCACAAGTCGAAGAAAAAGGATAAGAATAGGTCTCGCAAC
GTAGGGGGAGACAGCAGTGACTAG
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Coding sequence (CDS) from alignment at scaffold_49:19325..20248+

>mRNA_9957 ID=mRNA_9957|Name=jgi.p|Nanoce1779_2|533871|organism=Nannochloropsis oceanica|type=CDS|length=924bp|location=Sequence derived from alignment at scaffold_49:19325..20248+ (Nannochloropsis oceanica)
ATGCTCGCCTCTTCCGAACCACCACCAACACCATTTCAAGAACAACAAGT
AATTTTTAAGCTGGCCTTGCTTCCCCACGCAATGGAAGACATGGAGCAGC
ACGTACGCAGCAAGCTGCACACGCTCCTCATGAAATATAATGAAGACGCC
GGCGGGGTTTTGCTCGCAATCTACCATATCCGTCAACCGCCTGCGCGTCG
GTTTGCGACCATTTTGCATGACCTACCCTTTTTGCATGTGCAGGTGGAGG
CAATGGCTTTGGTGTTCACCCCAACACCGGGGAGTGTCGTGACAGGGGAG
GTTATAAAAGTGACAGGCACGCACGTGGCATTGTTGGTCTATGGGCTATT
TAATGCGGCCATTGCCAGGGAGGATATGCCGGATGCTTTTGAGTATGTGA
GTGGACGGGGGGAGTGGGTGTGTAATGGAGGAGAAGGAAGGAGTGAGGGA
AGGTTCGCTCTGGGGGAGCAGGTGAAATTTCGCGTGGTTAGGGTGCACGA
GGCGGCGGGGTTGCTCGCTTTGGATGGGTCGATGCGTGAGAAGGGAGAGG
AACCGCGGGAATCGGTGTACGGGCACCATCATTATCATCATCATCATCAT
CATCATCAGCAGCAGCAGCAGCAGCAACAACAGCATGAGGAGGGAGAGGA
GGGGGAGAGAGAAGGAGGAGGATGGAGATATGGACGTCAAAAAGAGCAGC
GGCCGCAATACGAGGAGGATGTGAGAGAGGAAGAAATACAGCAGCAGATC
GGGAAGCGAAAGGCAGGGGGAACTCACGATCAAGGCGAGAAGAAGGCAAA
GAAGCAGAAGAAGGAAAAGGACGACAGGGAGGGCCGGGGGAAGGAGACGG
ACAAGGAGAAGCACAAGTCGAAGAAAAAGGATAAGAATAGGTCTCGCAAC
GTAGGGGGAGACAGCAGTGACTAG
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Synonyms
Publications