jgi.p|Nanoce1779_2|610219, mRNA_9956 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|610219
Unique NamemRNA_9956
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1381
Alignment locationscaffold_49:17389..18769 -

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Properties
Property NameValue
TranscriptId610305
TrackFilteredModels2
ProteinId610219
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:17389..18769 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610219gene_9956Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610219mRNA_9956-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9956CDS_9956Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9956 ID=mRNA_9956|Name=jgi.p|Nanoce1779_2|610219|organism=Nannochloropsis oceanica|type=mRNA|length=1381bp
AGTAGCAGCAGCAGTAGCAGCAGCAGTAGCACCGAGCCATCTGCGCCAAT
TCCTAGAATAAGAAGAGCGCGAGCACTGATGGTTTCCTTCTCCTCAGCCT
CCCCATCCTCCCCCTCCTCCTCCTCATCCTCCTCCCTCTCCTTCTCCTCC
GCCCCCATCTCCGATCCCGGTGAGCTCAAGCGCCTGCTAATTGAAGCCAA
AGCTTCCGTCCAAGCGAACACCGCCTCCTTAGACCTAGCTAAATTCGAAG
GAGAAATCAATTATTACGAGCAAGAGGCCGCCCAGGAAGGTTTCTGGAGC
AAGCCGGCAAAAGCCCGGGCAGTTCTTACTAAATTAACGCGATTAAAAGG
CATCGTGGCACGGGTGAATGGATGGGAGAAAATGGTGGAGGATGCGGAGA
CGGCATTGTTGTTGTGGGAGGAGGAGGAAGGGGGGGAGAGCGAGGTGTGG
GGGCAGGAAGGGAGGGAGGGCTTGCGGAAGTTGATGGAGGACTTGGAGAG
GTGGGAAGTGGAGAGACTTTTATCTGGACCTTATGATGGATGTGGATGTC
GTATGCTGATTACGGCAGGGGTGGGGGGGGCAGATGCGAGTGATTGGGCA
GGGATGCTTTTGCGGATGTACACGAGGTACGGGGAGAGGAAGGGGTGGAA
GGTGAGGGTAGTTGAAATGAGCGTGCCGGTGGAGGGTTTTGGGGTGAAGA
GTGCGATGGTGGAGGTGGAGGGAGACATGGCGTTTGGGTTTCTGAAGGCG
GAGAAGGGGACGCATCGGCTGGTGAGAATCAGTCCGTTCAACAGTGGAGG
CAAGAGGCAGACGAGTTTTGCAGGGGTTGAGACCATGCCGATCTTGTCCG
AGGAGGCGTTGGAGGAGGTGGTGATTGAGGAGGGGGACGTGGAGATGACC
ACGTCAAGGGCTGGAGGGGCAGGGGGTCAGAACGTTAACAAAGTCGAGAC
GGCCGTGCGGCTGAAGCATCTGCCGACGGGCTTGGTTGTGAGGTGTCAGG
AAGAACGTTCGCAGTTGCTGAACCGGAAGAAGGCGATGGATATGTTGAAA
GAGAAGCTGTTGGTGGTAAAGGAGGAGCAGAGGGTGGAGGAGCTGGCGGA
GATTAGAGGAGACCTAGTGGAGGCGAGCTGGGGACAGCAGATCCGGAATT
ACGTTTTGCATCCTTATAAGCTGGTCAAAGACACGCGGACGGAGAGGGAG
ACCGTGGATGTAGCGAGCGTCTTGGAGGGGGGGGAGGGCCTGGATGACTT
CGTGGGTGCGTATTTGCGGTGGAGGTCCAAAGAAAATGTCGTAGAAACGT
TGGTTGAAGGATAAAAAAAAATAACAAATGAAGAAATGCTGGGGATGGTT
TGACGAGAGGAAGGTGAGTGTGGGTACGAGA
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protein sequence of jgi.p|Nanoce1779_2|610219

>mRNA_9956-protein ID=mRNA_9956-protein|Name=jgi.p|Nanoce1779_2|610219|organism=Nannochloropsis oceanica|type=polypeptide|length=412bp
MVSFSSASPSSPSSSSSSSLSFSSAPISDPGELKRLLIEAKASVQANTAS
LDLAKFEGEINYYEQEAAQEGFWSKPAKARAVLTKLTRLKGIVARVNGWE
KMVEDAETALLLWEEEEGGESEVWGQEGREGLRKLMEDLERWEVERLLSG
PYDGCGCRMLITAGVGGADASDWAGMLLRMYTRYGERKGWKVRVVEMSVP
VEGFGVKSAMVEVEGDMAFGFLKAEKGTHRLVRISPFNSGGKRQTSFAGV
ETMPILSEEALEEVVIEEGDVEMTTSRAGGAGGQNVNKVETAVRLKHLPT
GLVVRCQEERSQLLNRKKAMDMLKEKLLVVKEEQRVEELAEIRGDLVEAS
WGQQIRNYVLHPYKLVKDTRTERETVDVASVLEGGEGLDDFVGAYLRWRS
KENVVETLVEG*
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mRNA from alignment at scaffold_49:17389..18769-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9956 ID=mRNA_9956|Name=jgi.p|Nanoce1779_2|610219|organism=Nannochloropsis oceanica|type=mRNA|length=1381bp|location=Sequence derived from alignment at scaffold_49:17389..18769- (Nannochloropsis oceanica)
AGTAGCAGCAGCAGTAGCAGCAGCAGTAGCACCGAGCCATCTGCGCCAAT
TCCTAGAATAAGAAGAGCGCGAGCACTGATGGTTTCCTTCTCCTCAGCCT
CCCCATCCTCCCCCTCCTCCTCCTCATCCTCCTCCCTCTCCTTCTCCTCC
GCCCCCATCTCCGATCCCGGTGAGCTCAAGCGCCTGCTAATTGAAGCCAA
AGCTTCCGTCCAAGCGAACACCGCCTCCTTAGACCTAGCTAAATTCGAAG
GAGAAATCAATTATTACGAGCAAGAGGCCGCCCAGGAAGGTTTCTGGAGC
AAGCCGGCAAAAGCCCGGGCAGTTCTTACTAAATTAACGCGATTAAAAGG
CATCGTGGCACGGGTGAATGGATGGGAGAAAATGGTGGAGGATGCGGAGA
CGGCATTGTTGTTGTGGGAGGAGGAGGAAGGGGGGGAGAGCGAGGTGTGG
GGGCAGGAAGGGAGGGAGGGCTTGCGGAAGTTGATGGAGGACTTGGAGAG
GTGGGAAGTGGAGAGACTTTTATCTGGACCTTATGATGGATGTGGATGTC
GTATGCTGATTACGGCAGGGGTGGGGGGGGCAGATGCGAGTGATTGGGCA
GGGATGCTTTTGCGGATGTACACGAGGTACGGGGAGAGGAAGGGGTGGAA
GGTGAGGGTAGTTGAAATGAGCGTGCCGGTGGAGGGTTTTGGGGTGAAGA
GTGCGATGGTGGAGGTGGAGGGAGACATGGCGTTTGGGTTTCTGAAGGCG
GAGAAGGGGACGCATCGGCTGGTGAGAATCAGTCCGTTCAACAGTGGAGG
CAAGAGGCAGACGAGTTTTGCAGGGGTTGAGACCATGCCGATCTTGTCCG
AGGAGGCGTTGGAGGAGGTGGTGATTGAGGAGGGGGACGTGGAGATGACC
ACGTCAAGGGCTGGAGGGGCAGGGGGTCAGAACGTTAACAAAGTCGAGAC
GGCCGTGCGGCTGAAGCATCTGCCGACGGGCTTGGTTGTGAGGTGTCAGG
AAGAACGTTCGCAGTTGCTGAACCGGAAGAAGGCGATGGATATGTTGAAA
GAGAAGCTGTTGGTGGTAAAGGAGGAGCAGAGGGTGGAGGAGCTGGCGGA
GATTAGAGGAGACCTAGTGGAGGCGAGCTGGGGACAGCAGATCCGGAATT
ACGTTTTGCATCCTTATAAGCTGGTCAAAGACACGCGGACGGAGAGGGAG
ACCGTGGATGTAGCGAGCGTCTTGGAGGGGGGGGAGGGCCTGGATGACTT
CGTGGGTGCGTATTTGCGGTGGAGGTCCAAAGAAAATGTCGTAGAAACGT
TGGTTGAAGGATAAAAAAAAATAACAAATGAAGAAATGCTGGGGATGGTT
TGACGAGAGGAAGGTGAGTGTGGGTACGAGA
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Coding sequence (CDS) from alignment at scaffold_49:17389..18769-

>mRNA_9956 ID=mRNA_9956|Name=jgi.p|Nanoce1779_2|610219|organism=Nannochloropsis oceanica|type=CDS|length=1236bp|location=Sequence derived from alignment at scaffold_49:17389..18769- (Nannochloropsis oceanica)
ATGGTTTCCTTCTCCTCAGCCTCCCCATCCTCCCCCTCCTCCTCCTCATC
CTCCTCCCTCTCCTTCTCCTCCGCCCCCATCTCCGATCCCGGTGAGCTCA
AGCGCCTGCTAATTGAAGCCAAAGCTTCCGTCCAAGCGAACACCGCCTCC
TTAGACCTAGCTAAATTCGAAGGAGAAATCAATTATTACGAGCAAGAGGC
CGCCCAGGAAGGTTTCTGGAGCAAGCCGGCAAAAGCCCGGGCAGTTCTTA
CTAAATTAACGCGATTAAAAGGCATCGTGGCACGGGTGAATGGATGGGAG
AAAATGGTGGAGGATGCGGAGACGGCATTGTTGTTGTGGGAGGAGGAGGA
AGGGGGGGAGAGCGAGGTGTGGGGGCAGGAAGGGAGGGAGGGCTTGCGGA
AGTTGATGGAGGACTTGGAGAGGTGGGAAGTGGAGAGACTTTTATCTGGA
CCTTATGATGGATGTGGATGTCGTATGCTGATTACGGCAGGGGTGGGGGG
GGCAGATGCGAGTGATTGGGCAGGGATGCTTTTGCGGATGTACACGAGGT
ACGGGGAGAGGAAGGGGTGGAAGGTGAGGGTAGTTGAAATGAGCGTGCCG
GTGGAGGGTTTTGGGGTGAAGAGTGCGATGGTGGAGGTGGAGGGAGACAT
GGCGTTTGGGTTTCTGAAGGCGGAGAAGGGGACGCATCGGCTGGTGAGAA
TCAGTCCGTTCAACAGTGGAGGCAAGAGGCAGACGAGTTTTGCAGGGGTT
GAGACCATGCCGATCTTGTCCGAGGAGGCGTTGGAGGAGGTGGTGATTGA
GGAGGGGGACGTGGAGATGACCACGTCAAGGGCTGGAGGGGCAGGGGGTC
AGAACGTTAACAAAGTCGAGACGGCCGTGCGGCTGAAGCATCTGCCGACG
GGCTTGGTTGTGAGGTGTCAGGAAGAACGTTCGCAGTTGCTGAACCGGAA
GAAGGCGATGGATATGTTGAAAGAGAAGCTGTTGGTGGTAAAGGAGGAGC
AGAGGGTGGAGGAGCTGGCGGAGATTAGAGGAGACCTAGTGGAGGCGAGC
TGGGGACAGCAGATCCGGAATTACGTTTTGCATCCTTATAAGCTGGTCAA
AGACACGCGGACGGAGAGGGAGACCGTGGATGTAGCGAGCGTCTTGGAGG
GGGGGGAGGGCCTGGATGACTTCGTGGGTGCGTATTTGCGGTGGAGGTCC
AAAGAAAATGTCGTAGAAACGTTGGTTGAAGGATAA
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Synonyms
Publications