jgi.p|Nanoce1779_2|610211, mRNA_9954 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|610211
Unique Name	mRNA_9954
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1674
Alignment location	scaffold_49:12189..13862 -

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Properties


Property Name	Value
TranscriptId	610297
Track	FilteredModels2
ProteinId	610211

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_49	supercontig	scaffold_49:12189..13862 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|610211	gene_9954	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|610211	mRNA_9954-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9954	CDS_9954	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_49:12189..13862-
coding sequence from alignment at scaffold_49:12189..13862-

mRNA sequence

>mRNA_9954 ID=mRNA_9954|Name=jgi.p|Nanoce1779_2|610211|organism=Nannochloropsis oceanica|type=mRNA|length=1674bp
AGGACATGTACCCGTTTCTTCGGAGCGGATGGCTTCATCTTTCCTTTCTT
TCGGTAGGAGTGAATTCTGAGGTGCCCGTGCGCCTGACAAGCTCTAACAA
ACAGTAATAAATGACAATTGTTGCACCAAACGTTTTGTGCACGGTTTACA
TCGTGGTGTTACCGTCAAGTCCATCCGATATGGGGAGGTTGGAAACCCGC
TTTTACGTCTCTAATTCGACTTACCTTATTGGTGCCCTCTTGGTGTCACA
TGTGGCCGCACATACCCCCGACTCATATCTTTCACCTTGTACGATGAATG
AGGAGGGAAAGGAGGGGGAGGAAGAACACTATTTGGGTTAGGGTTGGGGG
TTATTATTCCGGCCTGCAAATGAGTCCTGATGCAACAAGCAAAGAAGGCC
AAAGCAAAGCGAGTATCAAGTAGCAGGATAGAGGTTGAAAATCCATGTCA
TTTCCGCTTGTCCCCTCGGCAGACAACTTTATCTTTTAGCTACAGAAATA
CGCAGCTTCAAGCTTTCGTGTAAGCATTGGCTCTACTGCCTCGCAATCCG
CTGGCCAACATTTCCTCCCCATGTCACAGCCATACATCTATCCTCTTGCC
CTTCATTCCAAGCTCCTAGAATGTAAATTTCTTTCTGATGGATGATTGCA
CCGTCAAGGTCGTTCTTTCCTTTTTCCTTTCTTTCTATTCCTTCATTTTC
TCTGTCATCCTTTCATTCATTTTGCCCTTTTCTTTTCGCTTTGTGTCTCC
TATTTCTTTTGCTATCACCTTGTTCTTTTGATGTACTTTTTAAAGCCAAT
TTACTTATTCTGTCTTTCTTGCTAATCGCTTTGTTATTTTTATTATTCTT
TTGTCCTTTTTATGGGAGTGAATGGAGTGCGCACCTTTACCTTTCCAAAC
GCCCTTCTTTCTTTTCCTTTGTACGAACACATATTCGATGTTTGCTTCTA
CACCTCCTGCTCCTGCTCCGGCATCCTTATTTATTTATTTTTCCTTTTCT
CTATTCACAAACAATAATGAAAGCTTGAATCGACCATTACGGCAAAGAGT
AACACCTCGCTCCAGGTATTGGACTACGGAAGCGTGTATCATCTCTTCAT
CTGCTTTTCTCGGTTCTCCGCCCCTAAACGTGCATCGGCTTGGCTAGAAC
TCCCTGTGGACGCAGGATCCTGCTCTTGTCGTAAATATGTTGCCGCACGT
CCCCATTTACCAAGACGTTGCGTTCCACGTCCAGCACAATGGACCTGCCC
TGTCGGGGGAAGAAGTGAAAATAAGGATATGAAGAGAAACCTAAAATGAA
AAAGCCAGAAAGTTTTTTGCCCGGCCGCGAGCAATTTCAATGTATTCCGG
CAAGGGAACTTCTTACCCTCGCTCTCCCTCCCCTCCGTACTTCAAAGACG
TACCGACGGCAGCCTGAAGAAGACCAGCATGTGTTGGCAAGGGCGTGCTG
ATACTATAGGTTGAATGTTTTAGCTTGATATGTACACTAGAGCGCAATCA
GATGCATAAGAACATGGGAAATGCTGCCTTGGATTTGGGGGAGCGTAAGA
GTTGTCACTGAGTGTGATGTGTTGAGGCTCGGAGTTGTGTGCCCATTCAA
GCAGTCCTGCAGACAAGTTACTGCCCAAGAAATGTTTCCGGAAAGTTCCT
CTGCCTCTGTGCTCCCTGTATTGA

protein sequence of jgi.p|Nanoce1779_2|610211

>mRNA_9954-protein ID=mRNA_9954-protein|Name=jgi.p|Nanoce1779_2|610211|organism=Nannochloropsis oceanica|type=polypeptide|length=129bp
MIAPSRSFFPFSFLSIPSFSLSSFHSFCPFLFALCLLFLLLSPCSFDVLF
KANLLILSFLLIALLFLLFFCPFYGSEWSAHLYLSKRPSFFSFVRTHIRC
LLLHLLLLLRHPYLFIFPFLYSQTIMKA*

mRNA from alignment at scaffold_49:12189..13862-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9954 ID=mRNA_9954|Name=jgi.p|Nanoce1779_2|610211|organism=Nannochloropsis oceanica|type=mRNA|length=1674bp|location=Sequence derived from alignment at scaffold_49:12189..13862- (Nannochloropsis oceanica)
AGGACATGTACCCGTTTCTTCGGAGCGGATGGCTTCATCTTTCCTTTCTT
TCGGTAGGAGTGAATTCTGAGGTGCCCGTGCGCCTGACAAGCTCTAACAA
ACAGTAATAAATGACAATTGTTGCACCAAACGTTTTGTGCACGGTTTACA
TCGTGGTGTTACCGTCAAGTCCATCCGATATGGGGAGGTTGGAAACCCGC
TTTTACGTCTCTAATTCGACTTACCTTATTGGTGCCCTCTTGGTGTCACA
TGTGGCCGCACATACCCCCGACTCATATCTTTCACCTTGTACGATGAATG
AGGAGGGAAAGGAGGGGGAGGAAGAACACTATTTGGGTTAGGGTTGGGGG
TTATTATTCCGGCCTGCAAATGAGTCCTGATGCAACAAGCAAAGAAGGCC
AAAGCAAAGCGAGTATCAAGTAGCAGGATAGAGGTTGAAAATCCATGTCA
TTTCCGCTTGTCCCCTCGGCAGACAACTTTATCTTTTAGCTACAGAAATA
CGCAGCTTCAAGCTTTCGTGTAAGCATTGGCTCTACTGCCTCGCAATCCG
CTGGCCAACATTTCCTCCCCATGTCACAGCCATACATCTATCCTCTTGCC
CTTCATTCCAAGCTCCTAGAATGTAAATTTCTTTCTGATGGATGATTGCA
CCGTCAAGGTCGTTCTTTCCTTTTTCCTTTCTTTCTATTCCTTCATTTTC
TCTGTCATCCTTTCATTCATTTTGCCCTTTTCTTTTCGCTTTGTGTCTCC
TATTTCTTTTGCTATCACCTTGTTCTTTTGATGTACTTTTTAAAGCCAAT
TTACTTATTCTGTCTTTCTTGCTAATCGCTTTGTTATTTTTATTATTCTT
TTGTCCTTTTTATGGGAGTGAATGGAGTGCGCACCTTTACCTTTCCAAAC
GCCCTTCTTTCTTTTCCTTTGTACGAACACATATTCGATGTTTGCTTCTA
CACCTCCTGCTCCTGCTCCGGCATCCTTATTTATTTATTTTTCCTTTTCT
CTATTCACAAACAATAATGAAAGCTTGAATCGACCATTACGGCAAAGAGT
AACACCTCGCTCCAGGTATTGGACTACGGAAGCGTGTATCATCTCTTCAT
CTGCTTTTCTCGGTTCTCCGCCCCTAAACGTGCATCGGCTTGGCTAGAAC
TCCCTGTGGACGCAGGATCCTGCTCTTGTCGTAAATATGTTGCCGCACGT
CCCCATTTACCAAGACGTTGCGTTCCACGTCCAGCACAATGGACCTGCCC
TGTCGGGGGAAGAAGTGAAAATAAGGATATGAAGAGAAACCTAAAATGAA
AAAGCCAGAAAGTTTTTTGCCCGGCCGCGAGCAATTTCAATGTATTCCGG
CAAGGGAACTTCTTACCCTCGCTCTCCCTCCCCTCCGTACTTCAAAGACG
TACCGACGGCAGCCTGAAGAAGACCAGCATGTGTTGGCAAGGGCGTGCTG
ATACTATAGGTTGAATGTTTTAGCTTGATATGTACACTAGAGCGCAATCA
GATGCATAAGAACATGGGAAATGCTGCCTTGGATTTGGGGGAGCGTAAGA
GTTGTCACTGAGTGTGATGTGTTGAGGCTCGGAGTTGTGTGCCCATTCAA
GCAGTCCTGCAGACAAGTTACTGCCCAAGAAATGTTTCCGGAAAGTTCCT
CTGCCTCTGTGCTCCCTGTATTGA

Coding sequence (CDS) from alignment at scaffold_49:12189..13862-

>mRNA_9954 ID=mRNA_9954|Name=jgi.p|Nanoce1779_2|610211|organism=Nannochloropsis oceanica|type=CDS|length=387bp|location=Sequence derived from alignment at scaffold_49:12189..13862- (Nannochloropsis oceanica)
ATGATTGCACCGTCAAGGTCGTTCTTTCCTTTTTCCTTTCTTTCTATTCC
TTCATTTTCTCTGTCATCCTTTCATTCATTTTGCCCTTTTCTTTTCGCTT
TGTGTCTCCTATTTCTTTTGCTATCACCTTGTTCTTTTGATGTACTTTTT
AAAGCCAATTTACTTATTCTGTCTTTCTTGCTAATCGCTTTGTTATTTTT
ATTATTCTTTTGTCCTTTTTATGGGAGTGAATGGAGTGCGCACCTTTACC
TTTCCAAACGCCCTTCTTTCTTTTCCTTTGTACGAACACATATTCGATGT
TTGCTTCTACACCTCCTGCTCCTGCTCCGGCATCCTTATTTATTTATTTT
TCCTTTTCTCTATTCACAAACAATAATGAAAGCTTGA

Synonyms

Publications