jgi.p|Nanoce1779_2|610207, mRNA_9951 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|610207
Unique NamemRNA_9951
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length555
Alignment locationscaffold_49:11129..12033 -

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Properties
Property NameValue
TranscriptId610293
TrackFilteredModels2
ProteinId610207
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:11129..12033 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610207gene_9951Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610207mRNA_9951-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9951CDS_9951Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9951 ID=mRNA_9951|Name=jgi.p|Nanoce1779_2|610207|organism=Nannochloropsis oceanica|type=mRNA|length=555bp
ACAGGCACCACTGCAAACATCTTCACGACGTCATGGGTGCCAAGTCGACT
AAAGCCGTCGAGACGGAACCCCCCAAGTTGGGTAAAAGTGGTAAGAAAAT
CTGTTGCTCATGCCCGGAGACCAAAAAGATTCGAGATGAATGCGTGGTGA
TGTATGGAGAAGGAGCTTGCGCGGCAGTCATCGAGGCACACAAGACGTGT
CTAAGAGCTGAAGGCTTCAAAATCTAATGCGTGGAATCGGGAAAGGATTT
TGGGAGAGCCGGAGGAAAAGACAATGTTGAGAAGTGCAGGGCGGGAGGGA
GGGAGAGAGAGAGGGTGGGGAAAGATGGACAGTCCGAGTGTCAATAGAGG
AGGCCGAAGTCAAGAAGGGAGGGAGAGGGGGGAAGGGCTAAAAACACATA
TTTTCATGGACGAAAAAAGGAAAAGAAATTGTCGTCTGCCGCGGCTGGCT
GGGCTTGGAATGGGTGGATGAGTCCGTGCCGGCCTCCCTTTCAACATCAA
CCGTCTTTCTGGATTGTCCCGTCCTCATCAAAACTAAGCTTAGAAATTTT
CCCAC
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protein sequence of jgi.p|Nanoce1779_2|610207

>mRNA_9951-protein ID=mRNA_9951-protein|Name=jgi.p|Nanoce1779_2|610207|organism=Nannochloropsis oceanica|type=polypeptide|length=65bp
MGAKSTKAVETEPPKLGKSGKKICCSCPETKKIRDECVVMYGEGACAAVI
EAHKTCLRAEGFKI*
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mRNA from alignment at scaffold_49:11129..12033-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9951 ID=mRNA_9951|Name=jgi.p|Nanoce1779_2|610207|organism=Nannochloropsis oceanica|type=mRNA|length=905bp|location=Sequence derived from alignment at scaffold_49:11129..12033- (Nannochloropsis oceanica)
ACAGGCACCACTGCAAACATCTTCACGACGTCATGGGTGCCAAGTCGACT
AAAGCCGTCGAGACGGAACCCCCCAAGTTGGGTAAAAGTGGTAAGAAAAT
CTGTTGCTCATGCCCGGAGACCAAAAAGGTATGTTTCCATGCAATAAGCA
GTGCGAGGAGAAGAGGTGAGAATAGTAAAGAGGGCGAAAGCGGATTGAAA
TCTGGACCTGCAAGAATATTTAGTGTGCGCCCTATGTCTGCCTCGCTTGG
GCATGTGTAAGTCCAGGGGGTCGCGCGTCCCTGAACTGAAGGGAGTGAGG
GAAGCAGGAGCGTCTTGGTGCATAAATGCATTTCACGCAGAATGCGATCT
TGAACTTTTTTGAGCATTTTGGATAGAAGGCCGTTTGTCTGTACTCTAAT
ATTCACATCACATCCTTCCTTTGTCTCTCAATCCCTTTTTCCTTTCCTCT
TTCCCTCCTCCCTTCCCCCTCCGTGCAGATTCGAGATGAATGCGTGGTGA
TGTATGGAGAAGGAGCTTGCGCGGCAGTCATCGAGGCACACAAGACGTGT
CTAAGAGCTGAAGGCTTCAAAATCTAATGCGTGGAATCGGGAAAGGATTT
TGGGAGAGCCGGAGGAAAAGACAATGTTGAGAAGTGCAGGGCGGGAGGGA
GGGAGAGAGAGAGGGTGGGGAAAGATGGACAGTCCGAGTGTCAATAGAGG
AGGCCGAAGTCAAGAAGGGAGGGAGAGGGGGGAAGGGCTAAAAACACATA
TTTTCATGGACGAAAAAAGGAAAAGAAATTGTCGTCTGCCGCGGCTGGCT
GGGCTTGGAATGGGTGGATGAGTCCGTGCCGGCCTCCCTTTCAACATCAA
CCGTCTTTCTGGATTGTCCCGTCCTCATCAAAACTAAGCTTAGAAATTTT
CCCAC
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Coding sequence (CDS) from alignment at scaffold_49:11129..12033-

>mRNA_9951 ID=mRNA_9951|Name=jgi.p|Nanoce1779_2|610207|organism=Nannochloropsis oceanica|type=CDS|length=390bp|location=Sequence derived from alignment at scaffold_49:11129..12033- (Nannochloropsis oceanica)
ATTCGAGATGAATGCGTGGTGATGTATGGAGAAGGAGCTTGCGCGGCAGT
CATCGAGGCACACAAGACGTGTCTAAGAGCTGAAGGCTTCAAAATCTAAA
TGGGTGCCAAGTCGACTAAAGCCGTCGAGACGGAACCCCCCAAGTTGGGT
AAAAGTGGTAAGAAAATCTGTTGCTCATGCCCGGAGACCAAAAAGATTCG
AGATGAATGCGTGGTGATGTATGGAGAAGGAGCTTGCGCGGCAGTCATCG
AGGCACACAAGACGTGTCTAAGAGCTGAAGGCTTCAAAATCTAAATGGGT
GCCAAGTCGACTAAAGCCGTCGAGACGGAACCCCCCAAGTTGGGTAAAAG
TGGTAAGAAAATCTGTTGCTCATGCCCGGAGACCAAAAAG
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Synonyms
Publications