jgi.p|Nanoce1779_2|574941, mRNA_995 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|574941
Unique Name	mRNA_995
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1880
Alignment location	scaffold_2:963816..965695 -

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Properties


Property Name	Value
TranscriptId	575027
Track	FilteredModels2
ProteinId	574941

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:963816..965695 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574941	gene_995	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574941	mRNA_995-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_995	CDS_995	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:963816..965695-
coding sequence from alignment at scaffold_2:963816..965695-

mRNA sequence

>mRNA_995 ID=mRNA_995|Name=jgi.p|Nanoce1779_2|574941|organism=Nannochloropsis oceanica|type=mRNA|length=1880bp
GGGTGGGAGCCGGGCGAAGACGGGGCATCCTATGCACGAGCAGCAGCAGA
GGCAGTATCTCCAGCAGCAGCAGCAGCAACAGCAACAACACATGTCCGTG
GGAAGAGTAGAAATGCCAGGTTCTTATGCAGCCGTAGGTCGGACCGCTGG
GGAAGATGAAGAGTGTACGTTCCCTTCGTCCATGCAAATGTCATCCGATG
GAGGAGGAGGGGCACTACCAATAGCCTCTGCGGGCGCGGCGACGGCGGGA
GGGAGCAACATGCCCGCTGCTGTCGCTGCTACCGCCGCTGGGGTGGGGGT
AAATGGTCAGAGTAATAAGCAAGATTCGTTTTTGAACGGATTCCTGCGGA
AGGCCAAGTCCTTCGCTCGCCCTACAGCTGCCTCTTCGGCCAATCTCAGC
ACAACAACAGCGGCAGGAGGAGAAGGAGGAGGAGGAGGAGACGGAGACCG
GAGCAGTGGTAACCTGGTAGGTGGGGGATCGAATCCCGCACAACCACCCA
CGGCATCATTGACCGCTTCCGCCTCGCCTTTGGCGGCAGGAGCGGGCGCA
GCATCACTTGGACGGCCTAGAATCTCAACCTCCGTTCCTTACTCGTCCCC
GCCAGGAGGCGGACCCACAGTGAGTGGAGGGGGTAGGTGCTTGGGTGGCG
CAAACAGCAGCAGTAGTGCGGCGGTGGGGAAGAGTGGAGCAACGGCTACC
GCGCGCATTCCCTCTTCCTCGTCCTCGTCCTCGTCCTCCAAGCACGTCAA
CGCCGGGTTTGGTCAGTCAGGCTTGGCAGTACCGTCCTAGATTTTGGAGG
GAGGGTGGTAGGGACCGATTGCGGAATGTACGGCAAGCAGCAGTTGTGGG
GACGTTGAAGGAAGCCAAAGGAGAAGTGGCGTACATTGGGCCCTCCATCA
AGATACGTGGAAAAAATGACAAATGCCTATCACCATCAGCCGCTGCAGCA
ACAGCGCAGTAGCCACACTTGCAACGACGAAAAATATAATTTATATTAAT
CATGTGTTTGCTTTCGTTAGTGTGCCCGGGAGTAGGACAAGGGGAAAAGA
GTAGCAGAAAGTAGTAGGAGTGTTCATGTGGGAAAGATGGAGAGAGAATG
AGAAATAGACATTGGAAATTTGGCTTCCTGCGACTCCTCCATGTGGCGGT
GACAAAAAAAGGAGGAAGAGCGACTCGGAGTGAAAATGAGAGAAGAGGGG
GAGAGGCCGAGTAAGAGGTTGAGCACGTCGTGTATGTCAAGGTGGAGAGA
GGGAGAGGATGCGGGAGGACGTGTATGAGGTGTCTCTGTAACTATTTGTC
GATAGGCATCCTTTGCTATTGCAACTTCAGGGTTGTGGTGCGCGTCAGAG
AGAAAAGATAGATACGAGGAGTTGAAGCGACAGTCCAAGTAGGCGCGCAC
TCGCACCATTCTCTGTCCCTGGTTTATGTTGTTCAGCTCACCCATATTCA
GGCTTTACATAGGAAAGGAGGAAGGTTAAACACGACGCGACGACAAGGGA
TGTGGATGGAAAAGGAGAAGGAATAAAATAGAAGTAGAGGGACAACAACA
ACAACAACAACAACAACAACAACAACAACAACAACAACAAGGAGAAAAGG
AGAATTTGAAAAACAAGAAGAGGAAGAAGAACAAGAAATAGAACAACAAA
AAATAGAAGGGCGACTGCGTGAATGATTATCTTATCTTTCTTCTCGTCCG
TGGGCCCATACATTTGCCCAGTCAGCCAGCCACGAGGATGGGTGTGTGTC
TCTTGGTGGAAGTCAAAAGGTGAAAGGAACTTAAGGCAAGAAAGCGAACA
TTGATAGATTTTTTCGGCCAAGGAAAAAAACACCCAGCTATTTTGTCGTC
TCCCTCTTTTTTGTGTCCTTGTTTGCGCAA

protein sequence of jgi.p|Nanoce1779_2|574941

>mRNA_995-protein ID=mRNA_995-protein|Name=jgi.p|Nanoce1779_2|574941|organism=Nannochloropsis oceanica|type=polypeptide|length=253bp
MHEQQQRQYLQQQQQQQQQHMSVGRVEMPGSYAAVGRTAGEDEECTFPSS
MQMSSDGGGGALPIASAGAATAGGSNMPAAVAATAAGVGVNGQSNKQDSF
LNGFLRKAKSFARPTAASSANLSTTTAAGGEGGGGGDGDRSSGNLVGGGS
NPAQPPTASLTASASPLAAGAGAASLGRPRISTSVPYSSPPGGGPTVSGG
GRCLGGANSSSSAAVGKSGATATARIPSSSSSSSSSKHVNAGFGQSGLAV
PS*

mRNA from alignment at scaffold_2:963816..965695-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_995 ID=mRNA_995|Name=jgi.p|Nanoce1779_2|574941|organism=Nannochloropsis oceanica|type=mRNA|length=1880bp|location=Sequence derived from alignment at scaffold_2:963816..965695- (Nannochloropsis oceanica)
GGGTGGGAGCCGGGCGAAGACGGGGCATCCTATGCACGAGCAGCAGCAGA
GGCAGTATCTCCAGCAGCAGCAGCAGCAACAGCAACAACACATGTCCGTG
GGAAGAGTAGAAATGCCAGGTTCTTATGCAGCCGTAGGTCGGACCGCTGG
GGAAGATGAAGAGTGTACGTTCCCTTCGTCCATGCAAATGTCATCCGATG
GAGGAGGAGGGGCACTACCAATAGCCTCTGCGGGCGCGGCGACGGCGGGA
GGGAGCAACATGCCCGCTGCTGTCGCTGCTACCGCCGCTGGGGTGGGGGT
AAATGGTCAGAGTAATAAGCAAGATTCGTTTTTGAACGGATTCCTGCGGA
AGGCCAAGTCCTTCGCTCGCCCTACAGCTGCCTCTTCGGCCAATCTCAGC
ACAACAACAGCGGCAGGAGGAGAAGGAGGAGGAGGAGGAGACGGAGACCG
GAGCAGTGGTAACCTGGTAGGTGGGGGATCGAATCCCGCACAACCACCCA
CGGCATCATTGACCGCTTCCGCCTCGCCTTTGGCGGCAGGAGCGGGCGCA
GCATCACTTGGACGGCCTAGAATCTCAACCTCCGTTCCTTACTCGTCCCC
GCCAGGAGGCGGACCCACAGTGAGTGGAGGGGGTAGGTGCTTGGGTGGCG
CAAACAGCAGCAGTAGTGCGGCGGTGGGGAAGAGTGGAGCAACGGCTACC
GCGCGCATTCCCTCTTCCTCGTCCTCGTCCTCGTCCTCCAAGCACGTCAA
CGCCGGGTTTGGTCAGTCAGGCTTGGCAGTACCGTCCTAGATTTTGGAGG
GAGGGTGGTAGGGACCGATTGCGGAATGTACGGCAAGCAGCAGTTGTGGG
GACGTTGAAGGAAGCCAAAGGAGAAGTGGCGTACATTGGGCCCTCCATCA
AGATACGTGGAAAAAATGACAAATGCCTATCACCATCAGCCGCTGCAGCA
ACAGCGCAGTAGCCACACTTGCAACGACGAAAAATATAATTTATATTAAT
CATGTGTTTGCTTTCGTTAGTGTGCCCGGGAGTAGGACAAGGGGAAAAGA
GTAGCAGAAAGTAGTAGGAGTGTTCATGTGGGAAAGATGGAGAGAGAATG
AGAAATAGACATTGGAAATTTGGCTTCCTGCGACTCCTCCATGTGGCGGT
GACAAAAAAAGGAGGAAGAGCGACTCGGAGTGAAAATGAGAGAAGAGGGG
GAGAGGCCGAGTAAGAGGTTGAGCACGTCGTGTATGTCAAGGTGGAGAGA
GGGAGAGGATGCGGGAGGACGTGTATGAGGTGTCTCTGTAACTATTTGTC
GATAGGCATCCTTTGCTATTGCAACTTCAGGGTTGTGGTGCGCGTCAGAG
AGAAAAGATAGATACGAGGAGTTGAAGCGACAGTCCAAGTAGGCGCGCAC
TCGCACCATTCTCTGTCCCTGGTTTATGTTGTTCAGCTCACCCATATTCA
GGCTTTACATAGGAAAGGAGGAAGGTTAAACACGACGCGACGACAAGGGA
TGTGGATGGAAAAGGAGAAGGAATAAAATAGAAGTAGAGGGACAACAACA
ACAACAACAACAACAACAACAACAACAACAACAACAACAAGGAGAAAAGG
AGAATTTGAAAAACAAGAAGAGGAAGAAGAACAAGAAATAGAACAACAAA
AAATAGAAGGGCGACTGCGTGAATGATTATCTTATCTTTCTTCTCGTCCG
TGGGCCCATACATTTGCCCAGTCAGCCAGCCACGAGGATGGGTGTGTGTC
TCTTGGTGGAAGTCAAAAGGTGAAAGGAACTTAAGGCAAGAAAGCGAACA
TTGATAGATTTTTTCGGCCAAGGAAAAAAACACCCAGCTATTTTGTCGTC
TCCCTCTTTTTTGTGTCCTTGTTTGCGCAA

Coding sequence (CDS) from alignment at scaffold_2:963816..965695-

>mRNA_995 ID=mRNA_995|Name=jgi.p|Nanoce1779_2|574941|organism=Nannochloropsis oceanica|type=CDS|length=759bp|location=Sequence derived from alignment at scaffold_2:963816..965695- (Nannochloropsis oceanica)
ATGCACGAGCAGCAGCAGAGGCAGTATCTCCAGCAGCAGCAGCAGCAACA
GCAACAACACATGTCCGTGGGAAGAGTAGAAATGCCAGGTTCTTATGCAG
CCGTAGGTCGGACCGCTGGGGAAGATGAAGAGTGTACGTTCCCTTCGTCC
ATGCAAATGTCATCCGATGGAGGAGGAGGGGCACTACCAATAGCCTCTGC
GGGCGCGGCGACGGCGGGAGGGAGCAACATGCCCGCTGCTGTCGCTGCTA
CCGCCGCTGGGGTGGGGGTAAATGGTCAGAGTAATAAGCAAGATTCGTTT
TTGAACGGATTCCTGCGGAAGGCCAAGTCCTTCGCTCGCCCTACAGCTGC
CTCTTCGGCCAATCTCAGCACAACAACAGCGGCAGGAGGAGAAGGAGGAG
GAGGAGGAGACGGAGACCGGAGCAGTGGTAACCTGGTAGGTGGGGGATCG
AATCCCGCACAACCACCCACGGCATCATTGACCGCTTCCGCCTCGCCTTT
GGCGGCAGGAGCGGGCGCAGCATCACTTGGACGGCCTAGAATCTCAACCT
CCGTTCCTTACTCGTCCCCGCCAGGAGGCGGACCCACAGTGAGTGGAGGG
GGTAGGTGCTTGGGTGGCGCAAACAGCAGCAGTAGTGCGGCGGTGGGGAA
GAGTGGAGCAACGGCTACCGCGCGCATTCCCTCTTCCTCGTCCTCGTCCT
CGTCCTCCAAGCACGTCAACGCCGGGTTTGGTCAGTCAGGCTTGGCAGTA
CCGTCCTAG

Synonyms

Publications