jgi.p|Nanoce1779_2|323402, mRNA_9948 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|323402
Unique Name	mRNA_9948
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1192
Alignment location	scaffold_49:1026..2903 +

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Properties


Property Name	Value
TranscriptId	323488
Track	FilteredModels2
ProteinId	323402

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_49	supercontig	scaffold_49:1026..2903 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|323402	gene_9948	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|323402	mRNA_9948-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9948	CDS_9948	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_49:1026..2903+
coding sequence from alignment at scaffold_49:1026..2903+

mRNA sequence

>mRNA_9948 ID=mRNA_9948|Name=jgi.p|Nanoce1779_2|323402|organism=Nannochloropsis oceanica|type=mRNA|length=1192bp
CAGGTAGGTAGGTAGGTAGGTAGGTAGGTAGGTAGGGAGGGAGGGAGGAA
GGGGTTGAGGAGCAAGGAGTACGTGGTGATGCTGAGGTGGCGTTGCCTGA
TTTTCGTTCCTCCCTCCCTCCCTCCCTTCCTCCTTCCTTCACCAGCTACC
TAGACCGCACTCAGATCAAGGCCGACGAAGACGAGGCCTCTTATTGGTTC
CGACACATCTCCAAAGGTGGCTGGCCGTTCTCGACGGCGGCCCATGGATG
GCCCATAGCCGACTGCACCGCCGAGGGGTTGAAGGGAGTGCTGGCCCTGA
TGGACGCCCCCTGCGTGGTGGAGGGAGGCGTGCCTCTCATCCCTCCCTCC
CGCCTCGAAGATGCCATGCATATCCTCCTGTCCTACCAGAACGGCGACGG
GGGATGGGCCACGTACGAGAATAATCGGGGATGGGGGTGGTTCGAGCTCC
TCAATCCTTCGGAGGTATTTGGGGACATCATGATCGACTACTCGTATGTG
GAGCTCACCTCCGCCGTTATGACCGCCATGCACAAGTTCAACAAACGGTT
TCCCAACCATCGAAGCAAGGAGATCACGCGCGCCATCGCCAGCGGCGCCC
GTTTCATCCGTTCCATCCAACGGCCGGACGGGTCTTGGTACGGCTCCTGG
GGCATCTGCTTCACCTACGGCACGTGGTTCGGCATCGAGGGCCTCATCGC
CGCCGGGGAGGACCCTGCCACCTCCCCCTCAATCCGACGCGCCCTCGGCT
TCCTCCTCGCCCACCAGCAGGCCAACGGCGGGTGGGGTGAGAGTTATCTG
TCCTGTGTCGACAAAGCCTACCCGGAAGATGGGACGGGACAGACACTGGG
GGAGGGAGGGTCAGGGGTGGTGCAGACGGCGTGGGCGGTGCTGGGGCTGC
TGGCGGGGAAATGCGAGGACAAGGAAGCGATGGAGCGAGGGGTGAGGTTT
CTGATGGCGCAGCAGCAGGAGGATGGGGATTGGGGGCAGGAGGGGATCAC
GGGGGTCTTTAACCGCAATTGTGGCATTACGTACAGTCAGTATCGCAACA
TCTTCCCGTTGTGGGCCTTGGGGCGATATGCAAAGGAAGTGGAGGAGAAG
GGGAGGTGACAGGGAGGGGAGGGAGAAAAGGGTGGATGGATGGATTGATG
GAGGGAGGGAGGGAGGGAGATATAGGTTGTCAGTAAGAACCA

protein sequence of jgi.p|Nanoce1779_2|323402

>mRNA_9948-protein ID=mRNA_9948-protein|Name=jgi.p|Nanoce1779_2|323402|organism=Nannochloropsis oceanica|type=polypeptide|length=270bp
MDAPCVVEGGVPLIPPSRLEDAMHILLSYQNGDGGWATYENNRGWGWFEL
LNPSEVFGDIMIDYSYVELTSAVMTAMHKFNKRFPNHRSKEITRAIASGA
RFIRSIQRPDGSWYGSWGICFTYGTWFGIEGLIAAGEDPATSPSIRRALG
FLLAHQQANGGWGESYLSCVDKAYPEDGTGQTLGEGGSGVVQTAWAVLGL
LAGKCEDKEAMERGVRFLMAQQQEDGDWGQEGITGVFNRNCGITYSQYRN
IFPLWALGRYAKEVEEKGR*

mRNA from alignment at scaffold_49:1026..2903+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9948 ID=mRNA_9948|Name=jgi.p|Nanoce1779_2|323402|organism=Nannochloropsis oceanica|type=mRNA|length=1878bp|location=Sequence derived from alignment at scaffold_49:1026..2903+ (Nannochloropsis oceanica)
CAGGTAGGTAGGTAGGTAGGTAGGTAGGTAGGTAGGGAGGGAGGGAGGAA
GGGGTTGAGGAGCAAGGAGTACGTGGTGATGCTGAGGTGGCGTTGCCTGA
TTTTCGTTCCTCCCTCCCTCCCTCCCTTCCTCCTTCCTTCACCAGCTACC
TAGACCGCACTCAGATCAAGGCCGACGAAGACGAGGCCTCTTATTGGTTC
CGACACATCTCCAAAGGTGCGTATACTCTTGCCTTCCCCCCTCCTTTCCT
TCCTCCCTCCCCTCCCTCCCTCCCCTCCCTCCCTCCCTCCCTCCCTTCCT
CCCTCCCTTCCTCCTGAACCTCCCGCCCGCCCTCCCTTCCCAGGTGGCTG
GCCGTTCTCGACGGCGGCCCATGGATGGCCCATAGCCGACTGCACCGCCG
AGGGGTTGAAGGGAGTGCTGGCCCTGATGGACGCCCCCTGCGTGGTGGAG
GGAGGTGAGGAGGGAGGAAGGGGGGGAGGAAACGAGGCAGGGAAGAAGAG
AGGGAAGAAAAGAGGCGCATCCGTGGTGCAACAAGATTCATCCCGTGTTC
CCCCTCCCTCCCCCTCTCCCTCCCCAGGCGTGCCTCTCATCCCTCCCTCC
CGCCTCGAAGATGCCATGCATATCCTCCTGTCCTACCAGAACGGCGACGG
GGGATGGGCCACGTACGAGAATAATCGGGGATGGGGGTGGTTCGAGCTCC
TCAATCCTTCGGAGGTGGGATGGGAGGGAGGGAGGAAGGGCGGGAGGGAG
GGCGAGGCCTGCAGGCAGGCACAAGAGTCCTCTTTCTAGACCCACCCACA
TACCAATCCTTCCTACCTCCCTCCCTCCCTCCCTCTCTCCCCCCTTCCTC
CTCCTCCCCCTCTGCAGGTATTTGGGGACATCATGATCGACTACTCGTAT
GTGGAGCTCACCTCCGCCGTTATGACCGCCATGCACAAGTTCAACAAACG
GTTTCCCAACCATCGAAGCAAGGAGGTAGGGCAAACAGGGAGGGAGGGAG
GGAGGGAGGGAAGGAAGGAAAGTGACCACCACCACAGGTATGTGTGTTCT
GACGTCCCTCCCTTCCTTCCTCCTTCCCTTCCTCCTTCTTCCCAGATCAC
GCGCGCCATCGCCAGCGGCGCCCGTTTCATCCGTTCCATCCAACGGCCGG
ACGGGTCTTGGTACGGCTCCTGGGGCATCTGCTTCACCTACGGCACGTGG
TTCGGCATCGAGGTGCGTTCCTTCCCTCCCTTATTCCATCCCTCCCTCCC
TCTTTCCCTCCCCCCCCCCTTCCATCCGTTCTGCCCCTTCAGCAGAGTCG
TTGTCTCTCCACTCATCCGTAACTCTTCTCTCGATCGCTCCTTTCCTCCC
CCCCCCTCACTCATTCCTCCTGTAGGGCCTCATCGCCGCCGGGGAGGACC
CTGCCACCTCCCCCTCAATCCGACGCGCCCTCGGCTTCCTCCTCGCCCAC
CAGCAGGCCAACGGCGGGTGGGGTGAGAGTTATCTGTCCTGTGTCGACAA
AGCCTACCCGGAAGATGGGACGGGACAGACACTGGGGGAGGGAGGGTCAG
GGGTGGTGCAGACGGCGTGGGCGGTGCTGGGGCTGCTGGCGGGGAAATGC
GAGGACAAGGAAGCGATGGAGCGAGGGGTGAGGTTTCTGATGGCGCAGCA
GCAGGAGGATGGGGATTGGGGGCAGGAGGGGATCACGGGGGTCTTTAACC
GCAATTGTGGCATTACGTACAGTCAGTATCGCAACATCTTCCCGTTGTGG
GCCTTGGGGCGATATGCAAAGGAAGTGGAGGAGAAGGGGAGGTGACAGGG
AGGGGAGGGAGAAAAGGGTGGATGGATGGATTGATGGAGGGAGGGAGGGA
GGGAGATATAGGTTGTCAGTAAGAACCA

Coding sequence (CDS) from alignment at scaffold_49:1026..2903+

>mRNA_9948 ID=mRNA_9948|Name=jgi.p|Nanoce1779_2|323402|organism=Nannochloropsis oceanica|type=CDS|length=4050bp|location=Sequence derived from alignment at scaffold_49:1026..2903+ (Nannochloropsis oceanica)
ATGGACGCCCCCTGCGTGGTGGAGGGAGGCGTGCCTCTCATCCCTCCCTC
CCGCCTCGAAGATGCCATGCATATCCTCCTGTCCTACCAGAACGGCGACG
GGGGATGGGCCACGTACGAGAATAATCGGGGATGGGGGTGGTTCGAGCTC
CTCAATCCTTCGGAGGTATTTGGGGACATCATGATCGACTACTCGTATGT
GGAGCTCACCTCCGCCGTTATGACCGCCATGCACAAGTTCAACAAACGGT
TTCCCAACCATCGAAGCAAGGAGATCACGCGCGCCATCGCCAGCGGCGCC
CGTTTCATCCGTTCCATCCAACGGCCGGACGGGTCTTGGTACGGCTCCTG
GGGCATCTGCTTCACCTACGGCACGTGGTTCGGCATCGAGGGCCTCATCG
CCGCCGGGGAGGACCCTGCCACCTCCCCCTCAATCCGACGCGCCCTCGGC
TTCCTCCTCGCCCACCAGCAGGCCAACGGCGGGTGGGGTGAGAGTTATCT
GTCCTGTGTCGACAAAGCCTACCCGGAAGATGGGACGGGACAGACACTGG
GGGAGGGAGGGTCAGGGGTGGTGCAGACGGCGTGGGCGGTGCTGGGGCTG
CTGGCGGGGAAATGCGAGGACAAGGAAGCGATGGAGCGAGGGGTGAGGTT
TCTGATGGCGCAGCAGCAGGAGGATGGGGATTGGGGGCAGGAGGGGATCA
CGGGGGTCTTTAACCGCAATTGTGGCATTACGTACAGTCAGTATCGCAAC
ATCTTCCCGTTGTGGGCCTTGGGGCGATATGCAAAGGAAGTGGAGGAGAA
GGGGAGGTGAATGGACGCCCCCTGCGTGGTGGAGGGAGGCGTGCCTCTCA
TCCCTCCCTCCCGCCTCGAAGATGCCATGCATATCCTCCTGTCCTACCAG
AACGGCGACGGGGGATGGGCCACGTACGAGAATAATCGGGGATGGGGGTG
GTTCGAGCTCCTCAATCCTTCGGAGGTATTTGGGGACATCATGATCGACT
ACTCGTATGTGGAGCTCACCTCCGCCGTTATGACCGCCATGCACAAGTTC
AACAAACGGTTTCCCAACCATCGAAGCAAGGAGATCACGCGCGCCATCGC
CAGCGGCGCCCGTTTCATCCGTTCCATCCAACGGCCGGACGGGTCTTGGT
ACGGCTCCTGGGGCATCTGCTTCACCTACGGCACGTGGTTCGGCATCGAG
GGCCTCATCGCCGCCGGGGAGGACCCTGCCACCTCCCCCTCAATCCGACG
CGCCCTCGGCTTCCTCCTCGCCCACCAGCAGGCCAACGGCGGGTGGGGTG
AGAGTTATCTGTCCTGTGTCGACAAAGCCTACCCGGAAGATGGGACGGGA
CAGACACTGGGGGAGGGAGGGTCAGGGGTGGTGCAGACGGCGTGGGCGGT
GCTGGGGCTGCTGGCGGGGAAATGCGAGGACAAGGAAGCGATGGAGCGAG
GGGTGAGGTTTCTGATGGCGCAGCAGCAGGAGGATGGGGATTGGGGGCAG
GAGGGGATCACGGGGGTCTTTAACCGCAATTGTGGCATTACGTACAGTCA
GTATCGCAACATCTTCCCGTTGTGGGCCTTGGGGCGATATGCAAAGGAAG
TGGAGGAGAAGGGGAGGTGAATGGACGCCCCCTGCGTGGTGGAGGGAGGC
GTGCCTCTCATCCCTCCCTCCCGCCTCGAAGATGCCATGCATATCCTCCT
GTCCTACCAGAACGGCGACGGGGGATGGGCCACGTACGAGAATAATCGGG
GATGGGGGTGGTTCGAGCTCCTCAATCCTTCGGAGGTATTTGGGGACATC
ATGATCGACTACTCGTATGTGGAGCTCACCTCCGCCGTTATGACCGCCAT
GCACAAGTTCAACAAACGGTTTCCCAACCATCGAAGCAAGGAGATCACGC
GCGCCATCGCCAGCGGCGCCCGTTTCATCCGTTCCATCCAACGGCCGGAC
GGGTCTTGGTACGGCTCCTGGGGCATCTGCTTCACCTACGGCACGTGGTT
CGGCATCGAGGGCCTCATCGCCGCCGGGGAGGACCCTGCCACCTCCCCCT
CAATCCGACGCGCCCTCGGCTTCCTCCTCGCCCACCAGCAGGCCAACGGC
GGGTGGGGTGAGAGTTATCTGTCCTGTGTCGACAAAGCCTACCCGGAAGA
TGGGACGGGACAGACACTGGGGGAGGGAGGGTCAGGGGTGGTGCAGACGG
CGTGGGCGGTGCTGGGGCTGCTGGCGGGGAAATGCGAGGACAAGGAAGCG
ATGGAGCGAGGGGTGAGGTTTCTGATGGCGCAGCAGCAGGAGGATGGGGA
TTGGGGGCAGGAGGGGATCACGGGGGTCTTTAACCGCAATTGTGGCATTA
CGTACAGTCAGTATCGCAACATCTTCCCGTTGTGGGCCTTGGGGCGATAT
GCAAAGGAAGTGGAGGAGAAGGGGAGGTGAATGGACGCCCCCTGCGTGGT
GGAGGGAGGCGTGCCTCTCATCCCTCCCTCCCGCCTCGAAGATGCCATGC
ATATCCTCCTGTCCTACCAGAACGGCGACGGGGGATGGGCCACGTACGAG
AATAATCGGGGATGGGGGTGGTTCGAGCTCCTCAATCCTTCGGAGGTATT
TGGGGACATCATGATCGACTACTCGTATGTGGAGCTCACCTCCGCCGTTA
TGACCGCCATGCACAAGTTCAACAAACGGTTTCCCAACCATCGAAGCAAG
GAGATCACGCGCGCCATCGCCAGCGGCGCCCGTTTCATCCGTTCCATCCA
ACGGCCGGACGGGTCTTGGTACGGCTCCTGGGGCATCTGCTTCACCTACG
GCACGTGGTTCGGCATCGAGGGCCTCATCGCCGCCGGGGAGGACCCTGCC
ACCTCCCCCTCAATCCGACGCGCCCTCGGCTTCCTCCTCGCCCACCAGCA
GGCCAACGGCGGGTGGGGTGAGAGTTATCTGTCCTGTGTCGACAAAGCCT
ACCCGGAAGATGGGACGGGACAGACACTGGGGGAGGGAGGGTCAGGGGTG
GTGCAGACGGCGTGGGCGGTGCTGGGGCTGCTGGCGGGGAAATGCGAGGA
CAAGGAAGCGATGGAGCGAGGGGTGAGGTTTCTGATGGCGCAGCAGCAGG
AGGATGGGGATTGGGGGCAGGAGGGGATCACGGGGGTCTTTAACCGCAAT
TGTGGCATTACGTACAGTCAGTATCGCAACATCTTCCCGTTGTGGGCCTT
GGGGCGATATGCAAAGGAAGTGGAGGAGAAGGGGAGGTGAATGGACGCCC
CCTGCGTGGTGGAGGGAGGCGTGCCTCTCATCCCTCCCTCCCGCCTCGAA
GATGCCATGCATATCCTCCTGTCCTACCAGAACGGCGACGGGGGATGGGC
CACGTACGAGAATAATCGGGGATGGGGGTGGTTCGAGCTCCTCAATCCTT
CGGAGGTATTTGGGGACATCATGATCGACTACTCGTATGTGGAGCTCACC
TCCGCCGTTATGACCGCCATGCACAAGTTCAACAAACGGTTTCCCAACCA
TCGAAGCAAGGAGATCACGCGCGCCATCGCCAGCGGCGCCCGTTTCATCC
GTTCCATCCAACGGCCGGACGGGTCTTGGTACGGCTCCTGGGGCATCTGC
TTCACCTACGGCACGTGGTTCGGCATCGAGGGCCTCATCGCCGCCGGGGA
GGACCCTGCCACCTCCCCCTCAATCCGACGCGCCCTCGGCTTCCTCCTCG
CCCACCAGCAGGCCAACGGCGGGTGGGGTGAGAGTTATCTGTCCTGTGTC
GACAAAGCCTACCCGGAAGATGGGACGGGACAGACACTGGGGGAGGGAGG
GTCAGGGGTGGTGCAGACGGCGTGGGCGGTGCTGGGGCTGCTGGCGGGGA
AATGCGAGGACAAGGAAGCGATGGAGCGAGGGGTGAGGTTTCTGATGGCG
CAGCAGCAGGAGGATGGGGATTGGGGGCAGGAGGGGATCACGGGGGTCTT
TAACCGCAATTGTGGCATTACGTACAGTCAGTATCGCAACATCTTCCCGT
TGTGGGCCTTGGGGCGATATGCAAAGGAAGTGGAGGAGAAGGGGAGGTGA

Synonyms

Publications