jgi.p|Nanoce1779_2|323426, mRNA_9947 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|323426
Unique NamemRNA_9947
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length504
Alignment locationscaffold_49:1..1103 +

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Properties
Property NameValue
TranscriptId323512
TrackFilteredModels2
ProteinId323426
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:1..1103 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|323426gene_9947Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|323426mRNA_9947-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9947CDS_9947Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9947 ID=mRNA_9947|Name=jgi.p|Nanoce1779_2|323426|organism=Nannochloropsis oceanica|type=mRNA|length=504bp
TGCTTGGGACGGGGAGAGGCACGCCTGCAGCGACCTGGACGTCTACGATC
CCGTCTCGGGCCTCATGAAGTTTCTCCAGAACTGCCTCTCGTACTACGAA
CGCGCCCCATGGCTCTGGCTGCGGAAGAAGGGCACCGATTTTGCCATTGC
CTACATCCACGCCGAGGATCAACAGACCAACTACGTCGATATAGGTCCTG
TGAACAAGACGCTCAACATGCTCTGTGTTTTTGCCGAGGGCGGGAAGGAG
GCCGAGGCCTTCAAGCGCCACGTCGGCCGTCTGGATGACTATTTGTGGCT
CGCGGAGGATGGGATGAAGATGCAGGGCTACAACGGGAGCCAGTGCTGGG
ACACCTCTTTCCTCGTCCAGGCGATGGCTGACGGCGGTTTGGTGGAGGCA
TTCCCCCAAGCCATGCGCAAAGCGTACAGGTAGGTAGGTAGGTAGGTAGG
TAGGTAGGTAGGGAGGGAGGGAGGAAGGGGTTGAGGAGCAAGGAGTACGT
GGTG
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protein sequence of jgi.p|Nanoce1779_2|323426

>mRNA_9947-protein ID=mRNA_9947-protein|Name=jgi.p|Nanoce1779_2|323426|organism=Nannochloropsis oceanica|type=polypeptide|length=123bp
MKFLQNCLSYYERAPWLWLRKKGTDFAIAYIHAEDQQTNYVDIGPVNKTL
NMLCVFAEGGKEAEAFKRHVGRLDDYLWLAEDGMKMQGYNGSQCWDTSFL
VQAMADGGLVEAFPQAMRKAYR*
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mRNA from alignment at scaffold_49:1..1103+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9947 ID=mRNA_9947|Name=jgi.p|Nanoce1779_2|323426|organism=Nannochloropsis oceanica|type=mRNA|length=1103bp|location=Sequence derived from alignment at scaffold_49:1..1103+ (Nannochloropsis oceanica)
TGCTTGGGACGGGGAGAGGCACGCCTGCAGCGACCTGGACGTCTACGATC
CCGTGAGGAGGGAGGGAGGGAGGGAGGGAGGAAAGGGAGGAGGGAGGGAG
GGAGGGATGGAAGGGAGGATGGAAGGACGGAGGGAAGGGACGGAGGGAAG
GAGGAAGGGAGGGGAAGGAGGGAGGAAGGAGGGAGGGAGGGGAGGGAGGG
AGGGAAGGGAGAGAGGGAAGGGAGGGAAGGGAGGACCGAGTGATGTAACC
GGTCGCTGGCAAACAACCGAGACTCACCCCTCCTTCCCTCCCCCCCTCCC
TCCCCGCCTCCCTCCCTCCCTTCCAGGTCTCGGGCCTCATGAAGTTTCTC
CAGAACTGCCTCTCGTACTACGAACGCGCCCCATGGCTCTGGCTGCGGAA
GAAGGGCACCGATTTTGCCATTGCCTACATCCACGCCGAGGATCAACAGA
CCAACTACGTCGATATAGGTGGGTGTCCCTCCCTCCCTCTTTCCTCCCTC
AATCCCTCCCTCAATCCCTTGTTGTCTTCCTCCGAGAAAGCGATCCTCCC
TCCCTCCCTCCCTCCCTCCCTTCCTTCCTTCCGAGGGATCGGTCCTCCCT
TTCACCCTTCCCCTCCCTCCCTCTTTTTCCAGGTCCTGTGAACAAGACGC
TCAACATGCTCTGTGTTTTTGCCGAGGGCGGGAAGGAGGCCGAGGCCTTC
AAGCGCCACGTCGGCCGTCTGGATGACTATTTGTGGCTCGCGGAGGATGG
GATGAAGATGCAGGTGAGGGAGGGAAGGAGGGAGGGAGGGAGGGACGGAG
AGAGGGAGTCAGGCCAGGAGGTCGCTTTTAGTGTCCTGAACTCTCAGTCA
TTCACTCGCTGAGCCTTTGCATCAACCCTCTGCAATATCCTCCCCTACCC
TCCCTCCCTCCCTCCCTCCCTCAGGGCTACAACGGGAGCCAGTGCTGGGA
CACCTCTTTCCTCGTCCAGGCGATGGCTGACGGCGGTTTGGTGGAGGCAT
TCCCCCAAGCCATGCGCAAAGCGTACAGGTAGGTAGGTAGGTAGGTAGGT
AGGTAGGTAGGGAGGGAGGGAGGAAGGGGTTGAGGAGCAAGGAGTACGTG
GTG
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Coding sequence (CDS) from alignment at scaffold_49:1..1103+

>mRNA_9947 ID=mRNA_9947|Name=jgi.p|Nanoce1779_2|323426|organism=Nannochloropsis oceanica|type=CDS|length=1107bp|location=Sequence derived from alignment at scaffold_49:1..1103+ (Nannochloropsis oceanica)
ATGAAGTTTCTCCAGAACTGCCTCTCGTACTACGAACGCGCCCCATGGCT
CTGGCTGCGGAAGAAGGGCACCGATTTTGCCATTGCCTACATCCACGCCG
AGGATCAACAGACCAACTACGTCGATATAGGTCCTGTGAACAAGACGCTC
AACATGCTCTGTGTTTTTGCCGAGGGCGGGAAGGAGGCCGAGGCCTTCAA
GCGCCACGTCGGCCGTCTGGATGACTATTTGTGGCTCGCGGAGGATGGGA
TGAAGATGCAGGGCTACAACGGGAGCCAGTGCTGGGACACCTCTTTCCTC
GTCCAGGCGATGGCTGACGGCGGTTTGGTGGAGGCATTCCCCCAAGCCAT
GCGCAAAGCGTACAGGTAGATGAAGTTTCTCCAGAACTGCCTCTCGTACT
ACGAACGCGCCCCATGGCTCTGGCTGCGGAAGAAGGGCACCGATTTTGCC
ATTGCCTACATCCACGCCGAGGATCAACAGACCAACTACGTCGATATAGG
TCCTGTGAACAAGACGCTCAACATGCTCTGTGTTTTTGCCGAGGGCGGGA
AGGAGGCCGAGGCCTTCAAGCGCCACGTCGGCCGTCTGGATGACTATTTG
TGGCTCGCGGAGGATGGGATGAAGATGCAGGGCTACAACGGGAGCCAGTG
CTGGGACACCTCTTTCCTCGTCCAGGCGATGGCTGACGGCGGTTTGGTGG
AGGCATTCCCCCAAGCCATGCGCAAAGCGTACAGGTAGATGAAGTTTCTC
CAGAACTGCCTCTCGTACTACGAACGCGCCCCATGGCTCTGGCTGCGGAA
GAAGGGCACCGATTTTGCCATTGCCTACATCCACGCCGAGGATCAACAGA
CCAACTACGTCGATATAGGTCCTGTGAACAAGACGCTCAACATGCTCTGT
GTTTTTGCCGAGGGCGGGAAGGAGGCCGAGGCCTTCAAGCGCCACGTCGG
CCGTCTGGATGACTATTTGTGGCTCGCGGAGGATGGGATGAAGATGCAGG
GCTACAACGGGAGCCAGTGCTGGGACACCTCTTTCCTCGTCCAGGCGATG
GCTGACGGCGGTTTGGTGGAGGCATTCCCCCAAGCCATGCGCAAAGCGTA
CAGGTAG
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Synonyms
Publications