jgi.p|Nanoce1779_2|306805, mRNA_9946 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|306805
Unique NamemRNA_9946
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1373
Alignment locationscaffold_41:193260..194917 -

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Properties
Property NameValue
TranscriptId306891
TrackFilteredModels2
ProteinId306805
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_41supercontigscaffold_41:193260..194917 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|306805gene_9946Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|306805mRNA_9946-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9946CDS_9946Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9946 ID=mRNA_9946|Name=jgi.p|Nanoce1779_2|306805|organism=Nannochloropsis oceanica|type=mRNA|length=1373bp
TGAAATTTCCGTTGGATAATTTTCGGATTTTCAAACCGCTACTCGATCGA
GCAAGCACCCTCCAAGCACCTCTCTTTGCCTCTCCGCCCCAACGAGTGTA
CAGGCATGTCATTATTTCCTTCATCGTTGCGCATCCTTTGACACTTAGAA
TCCACTCTGTCTTCACGCAGGAGACATAATGAGCCTCCCGTCGTCTTCGT
CGTCGTCTGCGTCAAACAACCCGCCGGACACCGCCCGGCGAGGCAGCCGA
ACGGAATCAGGAACTACACAAGGGGATGTAAATGAAGTGGAACAAGGTGC
TGGAGGAGGAGTTGAAGAAGGAGGGAGATTAGGAGGAACAGGAAGAGGGG
AAGGAGGAGGAGAAGGAGGAGGAGGGGGAGGCGGAGGCGGAGGACCGAGC
AGGAATGAGCGGCAGCTTTCGGCTAGCGTCGTAGAGGTGGAGGAAGATGT
AGCCATTAAACGAAAGGAGCAGGCGGATGTGTGCCCGGGGGCCGTCCTAG
AGGAAGAAATGGGGTTGGAATCTACTTCCGTGATGAAACACCGAGAGCAT
CCTCGCTGCCACTCCTCCTCCTGCCGTGCAGCTTCTGATTCTGCCGCTTT
CGAAGATACCAGCAACCACAACCACACTAGCCGACGGGCTAACAACCACC
TCTCTTCGTTTTCATCCTCTTCTTCTTTATCCTCCTCTTTCTCCTCCACT
TCTATTTCGCCTTGCAACAACCATACCCACCACAAAGACGGGGGGCGAGA
GTCTTACGTGGATCCCCCCCACCATCCCTCCCCCCCTCCCTCCATCCTCT
TCTCCCGCACTATTCGGCCCTCCCCTCTCCATCACCATCGTGCCTCCTGC
TGCCTCCCGTCTGGATGGGCCTGCACCACTCGTGTCTTTGGCGTTATCTT
CTCTCTTATTGGCTCCCTGGCCCTCGTCCTCTTTCTCCTCTCCCACACCA
CCCTTCCCTCCCTCCGGGACCGAACGGTGCTCAACGCCATGATCGTCTCC
TCTCCCTCCTCCCCCTCCTACGCAGCCTGGGCTTCCTCCGCCGCCGAAGT
CTCCGACTCCCCCCTCTTGACCTCCTACTACTTCTTCTCCATCCTCAACC
CAACCCCCTTTCTGACCGAGCGGGCCCTCCCCCGCTATCTGGAGAAGGGA
CCTTACGTTTTCAAGCAGCGCTCCAGCAAGACATCCGTGTCCTTCTCGGA
GGACGGCACCTTGGTCAGCTACGTCACTCTCGTACAAAATGATTTTGTGC
CGGAGAAGAGGTGACAAAGGAGGGGGAGAGAGGGGAAACGGGAAGACCCT
GACTGATGAGCGCCTGGAGCATCACGGATATCTGTCAACTTAGACGTCAG
ATCAGTCACAAGTGTGTGGGCGA
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protein sequence of jgi.p|Nanoce1779_2|306805

>mRNA_9946-protein ID=mRNA_9946-protein|Name=jgi.p|Nanoce1779_2|306805|organism=Nannochloropsis oceanica|type=polypeptide|length=362bp
MSLPSSSSSSASNNPPDTARRGSRTESGTTQGDVNEVEQGAGGGVEEGGR
LGGTGRGEGGGEGGGGGGGGGGPSRNERQLSASVVEVEEDVAIKRKEQAD
VCPGAVLEEEMGLESTSVMKHREHPRCHSSSCRAASDSAAFEDTSNHNHT
SRRANNHLSSFSSSSSLSSSFSSTSISPCNNHTHHKDGGRESYVDPPHHP
SPPPSILFSRTIRPSPLHHHRASCCLPSGWACTTRVFGVIFSLIGSLALV
LFLLSHTTLPSLRDRTVLNAMIVSSPSSPSYAAWASSAAEVSDSPLLTSY
YFFSILNPTPFLTERALPRYLEKGPYVFKQRSSKTSVSFSEDGTLVSYVT
LVQNDFVPEKR*
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mRNA from alignment at scaffold_41:193260..194917-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9946 ID=mRNA_9946|Name=jgi.p|Nanoce1779_2|306805|organism=Nannochloropsis oceanica|type=mRNA|length=1658bp|location=Sequence derived from alignment at scaffold_41:193260..194917- (Nannochloropsis oceanica)
TGAAATTTCCGTTGGATAATTTTCGGATTTTCAAACCGCTACTCGATCGA
GCAAGCACCCTCCAAGCACCTCTCTTTGCCTCTCCGCCCCAACGAGTGTA
CAGGCATGTCATTATTTCCTTCATCGTTGCGCATCCTTTGACACTTAGAA
TCCACTCTGTCTTCACGCAGGAGACATAATGAGCCTCCCGTCGTCTTCGT
CGTCGTCTGCGTCAAACAACCCGCCGGACACCGCCCGGCGAGGCAGCCGA
ACGGAATCAGGAACTACACAAGGGGATGTAAATGAAGTGGAACAAGGTGC
TGGAGGAGGAGTTGAAGAAGGAGGGAGATTAGGAGGAACAGGAAGAGGGG
AAGGAGGAGGAGAAGGAGGAGGAGGGGGAGGCGGAGGCGGAGGACCGAGC
AGGAATGAGCGGCAGCTTTCGGCTAGCGTCGTAGAGGTGGAGGAAGATGT
AGCCATTAAACGAAAGGAGCAGGCGGATGTGTGCCCGGGGGCCGTCCTAG
AGGAAGAAATGGGGTTGGAATCTACTTCCGTGGTAAGTATCTATGCTGTC
TGACTTGCGTAAGAGAGAGGTCTCGGGGGGTTCTTACATTGGTGTTTGTG
AATTGATTGTCATACGCGCGGTTGGTTCCTATCTTTCAGCAATCTCATTA
TTTCTCTCAGGCTCTGAGACATCCTGGTTTTTCATTTCGCCCTCCCATCC
CCCCCAAGTCACCCTTGCCTCCTCCATTCAATATCTCACCTCTTCCCCTC
TTTGGTCTCTCTTCCTCACCTCTCTCCTTGTTCGAATTCTTCTTTCCCTC
CCCCGACAACCATTTAGATGAAACACCGAGAGCATCCTCGCTGCCACTCC
TCCTCCTGCCGTGCAGCTTCTGATTCTGCCGCTTTCGAAGATACCAGCAA
CCACAACCACACTAGCCGACGGGCTAACAACCACCTCTCTTCGTTTTCAT
CCTCTTCTTCTTTATCCTCCTCTTTCTCCTCCACTTCTATTTCGCCTTGC
AACAACCATACCCACCACAAAGACGGGGGGCGAGAGTCTTACGTGGATCC
CCCCCACCATCCCTCCCCCCCTCCCTCCATCCTCTTCTCCCGCACTATTC
GGCCCTCCCCTCTCCATCACCATCGTGCCTCCTGCTGCCTCCCGTCTGGA
TGGGCCTGCACCACTCGTGTCTTTGGCGTTATCTTCTCTCTTATTGGCTC
CCTGGCCCTCGTCCTCTTTCTCCTCTCCCACACCACCCTTCCCTCCCTCC
GGGACCGAACGGTGCTCAACGCCATGATCGTCTCCTCTCCCTCCTCCCCC
TCCTACGCAGCCTGGGCTTCCTCCGCCGCCGAAGTCTCCGACTCCCCCCT
CTTGACCTCCTACTACTTCTTCTCCATCCTCAACCCAACCCCCTTTCTGA
CCGAGCGGGCCCTCCCCCGCTATCTGGAGAAGGGACCTTACGTTTTCAAG
CAGCGCTCCAGCAAGACATCCGTGTCCTTCTCGGAGGACGGCACCTTGGT
CAGCTACGTCACTCTCGTACAAAATGATTTTGTGCCGGAGAAGAGGTGAC
AAAGGAGGGGGAGAGAGGGGAAACGGGAAGACCCTGACTGATGAGCGCCT
GGAGCATCACGGATATCTGTCAACTTAGACGTCAGATCAGTCACAAGTGT
GTGGGCGA
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Coding sequence (CDS) from alignment at scaffold_41:193260..194917-

>mRNA_9946 ID=mRNA_9946|Name=jgi.p|Nanoce1779_2|306805|organism=Nannochloropsis oceanica|type=CDS|length=2172bp|location=Sequence derived from alignment at scaffold_41:193260..194917- (Nannochloropsis oceanica)
ATGAAACACCGAGAGCATCCTCGCTGCCACTCCTCCTCCTGCCGTGCAGC
TTCTGATTCTGCCGCTTTCGAAGATACCAGCAACCACAACCACACTAGCC
GACGGGCTAACAACCACCTCTCTTCGTTTTCATCCTCTTCTTCTTTATCC
TCCTCTTTCTCCTCCACTTCTATTTCGCCTTGCAACAACCATACCCACCA
CAAAGACGGGGGGCGAGAGTCTTACGTGGATCCCCCCCACCATCCCTCCC
CCCCTCCCTCCATCCTCTTCTCCCGCACTATTCGGCCCTCCCCTCTCCAT
CACCATCGTGCCTCCTGCTGCCTCCCGTCTGGATGGGCCTGCACCACTCG
TGTCTTTGGCGTTATCTTCTCTCTTATTGGCTCCCTGGCCCTCGTCCTCT
TTCTCCTCTCCCACACCACCCTTCCCTCCCTCCGGGACCGAACGGTGCTC
AACGCCATGATCGTCTCCTCTCCCTCCTCCCCCTCCTACGCAGCCTGGGC
TTCCTCCGCCGCCGAAGTCTCCGACTCCCCCCTCTTGACCTCCTACTACT
TCTTCTCCATCCTCAACCCAACCCCCTTTCTGACCGAGCGGGCCCTCCCC
CGCTATCTGGAGAAGGGACCTTACGTTTTCAAGCAGCGCTCCAGCAAGAC
ATCCGTGTCCTTCTCGGAGGACGGCACCTTGGTCAGCTACGTCACTCTCG
TACAAAATGATTTTGTGCCGGAGAAGAGGTGAATGAGCCTCCCGTCGTCT
TCGTCGTCGTCTGCGTCAAACAACCCGCCGGACACCGCCCGGCGAGGCAG
CCGAACGGAATCAGGAACTACACAAGGGGATGTAAATGAAGTGGAACAAG
GTGCTGGAGGAGGAGTTGAAGAAGGAGGGAGATTAGGAGGAACAGGAAGA
GGGGAAGGAGGAGGAGAAGGAGGAGGAGGGGGAGGCGGAGGCGGAGGACC
GAGCAGGAATGAGCGGCAGCTTTCGGCTAGCGTCGTAGAGGTGGAGGAAG
ATGTAGCCATTAAACGAAAGGAGCAGGCGGATGTGTGCCCGGGGGCCGTC
CTAGAGGAAGAAATGGGGTTGGAATCTACTTCCGTGATGAAACACCGAGA
GCATCCTCGCTGCCACTCCTCCTCCTGCCGTGCAGCTTCTGATTCTGCCG
CTTTCGAAGATACCAGCAACCACAACCACACTAGCCGACGGGCTAACAAC
CACCTCTCTTCGTTTTCATCCTCTTCTTCTTTATCCTCCTCTTTCTCCTC
CACTTCTATTTCGCCTTGCAACAACCATACCCACCACAAAGACGGGGGGC
GAGAGTCTTACGTGGATCCCCCCCACCATCCCTCCCCCCCTCCCTCCATC
CTCTTCTCCCGCACTATTCGGCCCTCCCCTCTCCATCACCATCGTGCCTC
CTGCTGCCTCCCGTCTGGATGGGCCTGCACCACTCGTGTCTTTGGCGTTA
TCTTCTCTCTTATTGGCTCCCTGGCCCTCGTCCTCTTTCTCCTCTCCCAC
ACCACCCTTCCCTCCCTCCGGGACCGAACGGTGCTCAACGCCATGATCGT
CTCCTCTCCCTCCTCCCCCTCCTACGCAGCCTGGGCTTCCTCCGCCGCCG
AAGTCTCCGACTCCCCCCTCTTGACCTCCTACTACTTCTTCTCCATCCTC
AACCCAACCCCCTTTCTGACCGAGCGGGCCCTCCCCCGCTATCTGGAGAA
GGGACCTTACGTTTTCAAGCAGCGCTCCAGCAAGACATCCGTGTCCTTCT
CGGAGGACGGCACCTTGGTCAGCTACGTCACTCTCGTACAAAATGATTTT
GTGCCGGAGAAGAGGTGAATGAGCCTCCCGTCGTCTTCGTCGTCGTCTGC
GTCAAACAACCCGCCGGACACCGCCCGGCGAGGCAGCCGAACGGAATCAG
GAACTACACAAGGGGATGTAAATGAAGTGGAACAAGGTGCTGGAGGAGGA
GTTGAAGAAGGAGGGAGATTAGGAGGAACAGGAAGAGGGGAAGGAGGAGG
AGAAGGAGGAGGAGGGGGAGGCGGAGGCGGAGGACCGAGCAGGAATGAGC
GGCAGCTTTCGGCTAGCGTCGTAGAGGTGGAGGAAGATGTAGCCATTAAA
CGAAAGGAGCAGGCGGATGTGTGCCCGGGGGCCGTCCTAGAGGAAGAAAT
GGGGTTGGAATCTACTTCCGTG
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Synonyms
Publications