jgi.p|Nanoce1779_2|642845, mRNA_9942 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|642845
Unique NamemRNA_9942
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length333
Alignment locationscaffold_41:177276..178602 -

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Properties
Property NameValue
TranscriptId642931
TrackFilteredModels2
ProteinId642845
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_41supercontigscaffold_41:177276..178602 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|642845gene_9942Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|642845mRNA_9942-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9942CDS_9942Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9942 ID=mRNA_9942|Name=jgi.p|Nanoce1779_2|642845|organism=Nannochloropsis oceanica|type=mRNA|length=333bp
ATGTTGTCGGTTGCTTGGGCTGCTGCTGCTGCTGATGAGGCTTATGACGG
CTTAGAGGCACTAGAAAGAGATGTCGCCGGTGCCAGTGGAATGGCCAGTA
TGGGAGGAGGAGCGACGACAGGCCCCTTGTCTCGCCCTGCCCCAGCAAGG
GGACCCGGGGGGCAAGTGACGGCGCGCGCACGGGGCGGCGCATCCTCGGC
CGGCATCCTGCGATTCTACACGGACGAGGCGCCAGGGCTCAGAGTCGGCC
CCCAAGTGGTGCTAGTGTCCTCGCTGGCCTTCATCGGCGTCGTGGTGCTC
CTCCACATCTGGGCCAAGTTCACCTCCAAGTAG
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protein sequence of jgi.p|Nanoce1779_2|642845

>mRNA_9942-protein ID=mRNA_9942-protein|Name=jgi.p|Nanoce1779_2|642845|organism=Nannochloropsis oceanica|type=polypeptide|length=111bp
MLSVAWAAAAADEAYDGLEALERDVAGASGMASMGGGATTGPLSRPAPAR
GPGGQVTARARGGASSAGILRFYTDEAPGLRVGPQVVLVSSLAFIGVVVL
LHIWAKFTSK*
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mRNA from alignment at scaffold_41:177276..178602-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9942 ID=mRNA_9942|Name=jgi.p|Nanoce1779_2|642845|organism=Nannochloropsis oceanica|type=mRNA|length=1327bp|location=Sequence derived from alignment at scaffold_41:177276..178602- (Nannochloropsis oceanica)
ATGTTGTCGGTTGCTTGGGCTGCTGCTGCTGCTGATGAGGCTTATGACGG
CTTAGAGGCGTAGAGACCCTATCCACGACAATACTCGCACGCCTTCTCAA
CCTCCCACACCGTATGCATATTATCAACAGGTCGAACGCGCACCTCGCCG
CTTCGCCCTTCCTCTCTCAACCCCCAAGACTAGAAAGAGATGGTACGTCC
CCTCGTCCCCTTCCCTGCCGTGCTCCTCAAAGCCCCCCTCTCAAGCCCTC
ATCCCTCACCCTGTTCCTTTCCCTTCCAATCGCGTCACCATCAGTCTGCA
CGCGCAGTCGCCGGTGCCAGTGGAATGGCCAGTATGGGAGGAGGAGCGAC
GACAGGCCCCTTGTCTCGCCCTGCCCCAGCAAGGGGACCCGGGGGGCAAG
TGACGGCGCGCGCACGGTACGGAGGGAGGGAGAGGGAGGAAAGGGAAGGG
AGGGGAGTGAAGAAGAGGGAGGGGCGGGGAGAAGAGGGAGGCACTACCGG
GGAGGGGAGGGGAGGGAGGCACCACCGGGGAGGAGATAAGGACGAGACAG
AAACACGGAGGAGGTTGGGAAGGAGGATGAGGAGATGAGAGGGGAAGAAA
CCTGCATCAGTCGATAGAGATTTTCATCTTTCGGCTTCTCCCCCTCATTT
TGGGGATGATGCATTCACTCGTTCACTTATTCATTTGGTTTTCGGTTTGT
CTATTTATCCCTGGATGTGTGACAGGGGGGCGCGCGCGCAGCGAGCAACG
ACGGGGGGGGGCGCAGAGCAGCCGGTGCGTGGAAGGAGAATGAGAAATGG
AGGGAAGGAGGGGGGAGAGCAGAGGAAGGGAGGGAGGGAGGGACGGAAGA
GCTGGAGATATTATACCTTGAAGGGCGACTACTTTCAAGGACGTTTTCTT
CTCATCTTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCCACCCTCC
CTCTCTCCACCAAACCAGGGGCGGCGCATCCTCGGCCGGCATCCTGCGAT
TCTACACGGACGAGGCGCCAGGGCTCAGAGTGTACGTACCACTCCCTCCC
TCCCCCACTCCTTCCCTCCCCCTCTATCCCTCCTTCTTTCCTGTCTTGGA
TTCCCTCTTCCTACTCTCTTGTGTTCCCATCATTCTCCCTTCCTCTCCCT
CTTTCCTCCTTTTGTCCTCCTCATTGCAACCACGCATCTAATCTTCTCCG
CACATCATGCTCTCCCTCCCTCCCTCCCCCCCCCGACAGCGGCCCCCAAG
TGGTGCTAGTGTCCTCGCTGGCCTTCATCGGCGTCGTGGTGCTCCTCCAC
ATCTGGGCCAAGTTCACCTCCAAGTAG
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Coding sequence (CDS) from alignment at scaffold_41:177276..178602-

>mRNA_9942 ID=mRNA_9942|Name=jgi.p|Nanoce1779_2|642845|organism=Nannochloropsis oceanica|type=CDS|length=1665bp|location=Sequence derived from alignment at scaffold_41:177276..178602- (Nannochloropsis oceanica)
CGGCCCCCAAGTGGTGCTAGTGTCCTCGCTGGCCTTCATCGGCGTCGTGG
TGCTCCTCCACATCTGGGCCAAGTTCACCTCCAAGTAGGGGCGGCGCATC
CTCGGCCGGCATCCTGCGATTCTACACGGACGAGGCGCCAGGGCTCAGAG
TTCGCCGGTGCCAGTGGAATGGCCAGTATGGGAGGAGGAGCGACGACAGG
CCCCTTGTCTCGCCCTGCCCCAGCAAGGGGACCCGGGGGGCAAGTGACGG
CGCGCGCACGACTAGAAAGAGATGATGTTGTCGGTTGCTTGGGCTGCTGC
TGCTGCTGATGAGGCTTATGACGGCTTAGAGGCCGGCCCCCAAGTGGTGC
TAGTGTCCTCGCTGGCCTTCATCGGCGTCGTGGTGCTCCTCCACATCTGG
GCCAAGTTCACCTCCAAGTAGGGGCGGCGCATCCTCGGCCGGCATCCTGC
GATTCTACACGGACGAGGCGCCAGGGCTCAGAGTTCGCCGGTGCCAGTGG
AATGGCCAGTATGGGAGGAGGAGCGACGACAGGCCCCTTGTCTCGCCCTG
CCCCAGCAAGGGGACCCGGGGGGCAAGTGACGGCGCGCGCACGACTAGAA
AGAGATGATGTTGTCGGTTGCTTGGGCTGCTGCTGCTGCTGATGAGGCTT
ATGACGGCTTAGAGGCCGGCCCCCAAGTGGTGCTAGTGTCCTCGCTGGCC
TTCATCGGCGTCGTGGTGCTCCTCCACATCTGGGCCAAGTTCACCTCCAA
GTAGGGGCGGCGCATCCTCGGCCGGCATCCTGCGATTCTACACGGACGAG
GCGCCAGGGCTCAGAGTTCGCCGGTGCCAGTGGAATGGCCAGTATGGGAG
GAGGAGCGACGACAGGCCCCTTGTCTCGCCCTGCCCCAGCAAGGGGACCC
GGGGGGCAAGTGACGGCGCGCGCACGACTAGAAAGAGATGATGTTGTCGG
TTGCTTGGGCTGCTGCTGCTGCTGATGAGGCTTATGACGGCTTAGAGGCC
GGCCCCCAAGTGGTGCTAGTGTCCTCGCTGGCCTTCATCGGCGTCGTGGT
GCTCCTCCACATCTGGGCCAAGTTCACCTCCAAGTAGGGGCGGCGCATCC
TCGGCCGGCATCCTGCGATTCTACACGGACGAGGCGCCAGGGCTCAGAGT
TCGCCGGTGCCAGTGGAATGGCCAGTATGGGAGGAGGAGCGACGACAGGC
CCCTTGTCTCGCCCTGCCCCAGCAAGGGGACCCGGGGGGCAAGTGACGGC
GCGCGCACGACTAGAAAGAGATGATGTTGTCGGTTGCTTGGGCTGCTGCT
GCTGCTGATGAGGCTTATGACGGCTTAGAGGCCGGCCCCCAAGTGGTGCT
AGTGTCCTCGCTGGCCTTCATCGGCGTCGTGGTGCTCCTCCACATCTGGG
CCAAGTTCACCTCCAAGTAGGGGCGGCGCATCCTCGGCCGGCATCCTGCG
ATTCTACACGGACGAGGCGCCAGGGCTCAGAGTTCGCCGGTGCCAGTGGA
ATGGCCAGTATGGGAGGAGGAGCGACGACAGGCCCCTTGTCTCGCCCTGC
CCCAGCAAGGGGACCCGGGGGGCAAGTGACGGCGCGCGCACGACTAGAAA
GAGATGATGTTGTCGGTTGCTTGGGCTGCTGCTGCTGCTGATGAGGCTTA
TGACGGCTTAGAGGC
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Synonyms
Publications