jgi.p|Nanoce1779_2|306604, mRNA_9940 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|306604
Unique Name	mRNA_9940
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1580
Alignment location	scaffold_41:172257..174914 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	306690
Track	FilteredModels2
ProteinId	306604

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_41	supercontig	scaffold_41:172257..174914 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|306604	gene_9940	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|306604	mRNA_9940-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9940	CDS_9940	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_41:172257..174914+
coding sequence from alignment at scaffold_41:172257..174914+

mRNA sequence

>mRNA_9940 ID=mRNA_9940|Name=jgi.p|Nanoce1779_2|306604|organism=Nannochloropsis oceanica|type=mRNA|length=1580bp
GAGAGCAGGCGTAGGCAGGAAGGCACGCAAGGACTGGGGTTATCCGCAAC
CCGTCATCTCCGAGTCGTCGTCCTGAAGATGGCCCGTTGCCCTTCAACTG
CCATTCCTCTGTCCACTTGACCAAAACACCACCCACACATACACACATAC
AAGACAGGCGACTCCCCAGCAGGGGCAGCAGTATGGAGATGGAGGGAGAG
CGGCAAAGGCAGCGCTTGCCACTATCACAATTCGAAGCAACTTGTCTTCC
TCCTGTCCAAAGACCTCCTTCCCCTGGACTGCTATCCGTCCTCCATCTCC
CACGCCCCCCTCTGCGCCTCCTACCCCTGCTCCTGCTCCTCCTTCTTCCT
GCCTCCATTCACAGTGTCCACCATCATCATCGTCCTAGCCCTCCTCCTTC
CTTCTTCTCTCGATCTGCCTTCCTCTTCCCCTCCTCTTTCCCTCCCCACC
AGCGCGCTTCCTGCTCCTGCCGCCGTCTCCTCTCTTCCACCTCCTCATCA
TCCACCCCTCCTCCTTCTACATCATCTCTTCCGCTCAGTAAACGAGACCG
CAAACGCCTACCAAAGGGCCCTCCTCCTCCTCCTCCTCCTCACGCATCAA
TGACTTATTTAGAGGAACGACTGAAAGAGCTGCCGACGCCCACCTATCCC
AACTTTGCCTTTAAAACTACGGCAACAGACCCGTCCGGCAAGACAGCCGC
GCGCTGTGGCCTCCTCAGCACGCCCCATGGGGACATGGAGACACCGGCTT
TCATATTTTGTGGCACGAAGGCGACTGTTAAAGGACTGACGCCCAAGCAA
CTGCGGGACGCGGGCACCCAAATCATCCTCTCCAACACGTACCATCTACT
CTTGCAGCCTGGCAGTGAGCTCGTCCAAGAACAAGGCGGACTGCAGGAGT
TCACTGGCTGGCACGGCCCGATGCTCACTGATAGTGGGGGGGTACCAGAT
TTTTAGCATGGGCCATGGATCGGTCTCGAACGAGATCAAAGGGAAACGCC
GCGCGGGGAAAGAAGGCGGGGAAGGGAAACCACATGAGGGCGGGAGGGAG
GGCGGGAAGGATGAAGGGTGGCAGAAAAGCCTGCTGAAAATTGATGAAGA
GGCAGCAATATTTCGGTCATACGTGGACGGATCGAAGAAGACGCTGTCGC
CTGAGAGCAGTATTGAGACGCAGCGAGGCCTAGGCGCAGACATAATTTTG
ACGCTGGATGAGTGTACTCCCTTCCATGTAGAAAAGAAATACACGGAGGA
GAGCATGGAGAGGAGCCACAGATGGGAAATGAGGAGTCTGATGGAATTCA
TCCGTGGCGACGACGGAAAGCAGTCCCTGTACGGCATCATCCAAGGGGGA
GTATATCCCGACCTCCGGGCCCTCTCCACTGCCTTCGTCAACGGCCACGC
CTTCTTCGGCGCGGCCATCGGGGGCAGCCTCGGACAGAACAAGACGCAGA
TGTACGACATCGTGGCCCTGACGGCCAAGCAGCTGAGGAAAGACCGGCCC
ATCCACCTGCTGGGAATAGGGGGAGTCCGCGACATCTTCCACGGGGTCCG
ACAAGGTGCGTTCTTCGCGCCTTTCCCTCG

protein sequence of jgi.p|Nanoce1779_2|306604

>mRNA_9940-protein ID=mRNA_9940-protein|Name=jgi.p|Nanoce1779_2|306604|organism=Nannochloropsis oceanica|type=polypeptide|length=258bp
MEMEGERQRQRLPLSQFEATCLPPVQRPPSPGLLSVLHLPRPPLRLLPLL
LLLLLPASIHSVHHHHRPSPPPSFFSRSAFLFPSSFPPHQRASCSCRRLL
SSTSSSSTPPPSTSSLPLSKRDRKRLPKGPPPPPPPHASMTYLEERLKEL
PTPTYPNFAFKTTATDPSGKTAARCGLLSTPHGDMETPAFIFCGTKATVK
GLTPKQLRDAGTQIILSNTYHLLLQPGSELVQEQGGLQEFTGWHGPMLTD
SGGVPDF*

mRNA from alignment at scaffold_41:172257..174914+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9940 ID=mRNA_9940|Name=jgi.p|Nanoce1779_2|306604|organism=Nannochloropsis oceanica|type=mRNA|length=2658bp|location=Sequence derived from alignment at scaffold_41:172257..174914+ (Nannochloropsis oceanica)
GAGAGCAGGCGTAGGCAGGAAGGCACGCAAGGACTGGGGTTATCCGCAAC
CCGTCATCTCCGAGTCGTCGTCCTGAAGATGGCCCGTTGCCCTTCAACTG
CCATTCCTCTGTCCACTTGACCAAAACACCACCCACACATACACACATAC
AAGACAGGCGACTCCCCAGCAGGGGCAGCAGTATGGAGATGGAGGGAGAG
CGGCAAAGGCAGCGCTTGCCACTATCACAATTCGAAGCAACTTGTCTTCC
TCCTGTCCAAAGACCTCCTTCCCCTGGACTGCTATCCGTCCTCCATCTCC
CACGCCCCCCTCTGCGCCTCCTACCCCTGCTCCTGCTCCTCCTTCTTCCT
GCCTCCATTCACAGTGTCCACCATCATCATCGTCCTAGCCCTCCTCCTTC
CTTCTTCTCTCGATCTGCCTTCCTCTTCCCCTCCTCTTTCCCTCCCCACC
AGCGCGCTTCCTGCTCCTGCCGCCGTCTCCTCTCTTCCACCTCCTCATCA
TCCACCCCTCCTCCTTCTACATCATCTCTTCCGCTCAGTAAACGAGACCG
CAAACGCCTACCAAAGGGCCCTCCTCCTCCTCCTCCTCCTCACGCATCAA
TGACTTATTTAGAGGAACGACTGAAAGAGCTGCCGACGCCCACCTATCCC
AACTTTGCCTTTAAAACTACGGCAACAGGTGAGAAAAAAAGAGGAAGATG
AAGGGAAGGAAGAAATGGCGAGAAATAACGGTCCCAAAGAGTTTCTGGGC
GTCCTTCGCTCCCTCCTTTTTGACTTTTTTCCTTCCCTCCCTCCGTCCCT
TCTTCCCTCCCTCCCTCCCTCTCTCCTTCTCAGACCCGTCCGGCAAGACA
GCCGCGCGCTGTGGCCTCCTCAGCACGCCCCATGGGGACATGGAGACACC
GGCTTTCATATTTTGTGGCACGAAGGCGACTGTTAAAGGACTGACGCCCA
AGCAACTGCGGGACGCGGGCACCCAAATCATCCTCTCCAACACGTACCAT
CTACTCTTGCAGCCTGGCAGTGAGCTCGTCCAAGGTACGTTCCCTCTTCC
CTTCATCCGTACCTCCCTCTTTCCCCGTCATTTCCACCTTCTCCCCCCTC
CATGCGTGGGTTTACAAGGTTGGCAATGCCGTCGAGACCGTGACCCTGTA
CATCCCTCCAGACTTCTTACCACGACCCTCTCCCTCCCTCAATCCCTCCC
TCTCTGTCTCAGAACAAGGCGGACTGCAGGAGTTCACTGGCTGGCACGGC
CCGATGCTCACTGATAGTGGGGGGGTACCAGATTTTTAGCATGGGCCATG
GGTAGGGTGGGAGGAAGGAGGGAGGGAGAGGGAGGGAAGGAGGGAGGGAA
CAGTGATCGAACGAACACTGAGTCACCCTCCCTCGTCCCTCCTTTCCTTT
CCCTTCCCTCTTCTCTCAGATCGGTCTCGAACGAGATCAAAGGGAAACGC
CGCGCGGGGAAAGAAGGCGGGGAAGGGAAACCACATGAGGGCGGGAGGGA
GGGCGGGAAGGATGAAGGGTGGCAGAAAAGCCTGCTGAAAATTGATGAAG
AGGCAGCAATATTTCGGTCATACGTGGACGGATCGAAGAAGACGCTGTCG
CCTGAGAGCAGTATTGAGACGCAGCGAGGCCTAGGTGGGGAGGGAGGGAG
GGAGGGAGGGAGGGAGGGGGAAAAGGAAAGTGGACATCCTCGAAAATAGC
AAGAGGGAGACTAATCCTTCCCTCCCTCTCTCCCTCTCTTTTCCTTAGGC
GCAGACATAATTTTGACGCTGGATGAGTGTACTCCCTTCCATGTAGAAAA
GAAATACACGGAGGAGAGCATGGAGAGGAGCCACAGATGGGAAATGAGGA
GTCTGATGGAATTCATCCGTGGCGACGACGGAAAGCAGGTAATTTATAGA
AATTTACAAATGATATTATGTGCATATTTTTATTTATATCTATTTTATAT
TACCTATGTGTGTCTTCATTATTATTATGATTATTATGATTATTATTATT
ATGATTATTATGATTATTATTATTATTATTATTATGATTATTATTATGAT
TATTATTATGATTATTATTATGATGATGATGATTATTATTATTATTATTA
TTATTATTATTATTATTATTATTATTATTATTATTATGATTATTTAATGC
ATGCATTTAGTTATATGTTATTTTTTAATATATGCATGCAGTTATATACT
TATACTCTAGTCATTGGTGCACCTATTTTATTCATTGATTTATGCACAAA
TGCGTATATCACTTGTATATTCATTTATAGGGACATGTATTTATCCATTA
ATCTGTTTATCGATTTATTAATTCAAAAAATCCAAATTAATTCATTGATT
TAATTCATTAATTAATATATGAATTGATATTTCTTCACTCCCTGCACCCA
GTCCCTGTACGGCATCATCCAAGGGGGAGTATATCCCGACCTCCGGGCCC
TCTCCACTGCCTTCGTCAACGGCCACGCCTTCTTCGGCGCGGCCATCGGG
GGCAGCCTCGGACAGAACAAGACGCAGATGTACGACATCGTGGCCCTGAC
GGCCAAGCAGCTGAGGAAAGACCGGCCCATCCACCTGCTGGGAATAGGGG
GAGTCCGCGACATCTTCCACGGGGTCCGACAAGGTGCGTTCTTCGCGCCT
TTCCCTCG

Coding sequence (CDS) from alignment at scaffold_41:172257..174914+

>mRNA_9940 ID=mRNA_9940|Name=jgi.p|Nanoce1779_2|306604|organism=Nannochloropsis oceanica|type=CDS|length=2322bp|location=Sequence derived from alignment at scaffold_41:172257..174914+ (Nannochloropsis oceanica)
ATGGAGATGGAGGGAGAGCGGCAAAGGCAGCGCTTGCCACTATCACAATT
CGAAGCAACTTGTCTTCCTCCTGTCCAAAGACCTCCTTCCCCTGGACTGC
TATCCGTCCTCCATCTCCCACGCCCCCCTCTGCGCCTCCTACCCCTGCTC
CTGCTCCTCCTTCTTCCTGCCTCCATTCACAGTGTCCACCATCATCATCG
TCCTAGCCCTCCTCCTTCCTTCTTCTCTCGATCTGCCTTCCTCTTCCCCT
CCTCTTTCCCTCCCCACCAGCGCGCTTCCTGCTCCTGCCGCCGTCTCCTC
TCTTCCACCTCCTCATCATCCACCCCTCCTCCTTCTACATCATCTCTTCC
GCTCAGTAAACGAGACCGCAAACGCCTACCAAAGGGCCCTCCTCCTCCTC
CTCCTCCTCACGCATCAATGACTTATTTAGAGGAACGACTGAAAGAGCTG
CCGACGCCCACCTATCCCAACTTTGCCTTTAAAACTACGGCAACAGACCC
GTCCGGCAAGACAGCCGCGCGCTGTGGCCTCCTCAGCACGCCCCATGGGG
ACATGGAGACACCGGCTTTCATATTTTGTGGCACGAAGGCGACTGTTAAA
GGACTGACGCCCAAGCAACTGCGGGACGCGGGCACCCAAATCATCCTCTC
CAACACGTACCATCTACTCTTGCAGCCTGGCAGTGAGCTCGTCCAAGAAC
AAGGCGGACTGCAGGAGTTCACTGGCTGGCACGGCCCGATGCTCACTGAT
AGTGGGGGGGTACCAGATTTTTAGATGGAGATGGAGGGAGAGCGGCAAAG
GCAGCGCTTGCCACTATCACAATTCGAAGCAACTTGTCTTCCTCCTGTCC
AAAGACCTCCTTCCCCTGGACTGCTATCCGTCCTCCATCTCCCACGCCCC
CCTCTGCGCCTCCTACCCCTGCTCCTGCTCCTCCTTCTTCCTGCCTCCAT
TCACAGTGTCCACCATCATCATCGTCCTAGCCCTCCTCCTTCCTTCTTCT
CTCGATCTGCCTTCCTCTTCCCCTCCTCTTTCCCTCCCCACCAGCGCGCT
TCCTGCTCCTGCCGCCGTCTCCTCTCTTCCACCTCCTCATCATCCACCCC
TCCTCCTTCTACATCATCTCTTCCGCTCAGTAAACGAGACCGCAAACGCC
TACCAAAGGGCCCTCCTCCTCCTCCTCCTCCTCACGCATCAATGACTTAT
TTAGAGGAACGACTGAAAGAGCTGCCGACGCCCACCTATCCCAACTTTGC
CTTTAAAACTACGGCAACAGACCCGTCCGGCAAGACAGCCGCGCGCTGTG
GCCTCCTCAGCACGCCCCATGGGGACATGGAGACACCGGCTTTCATATTT
TGTGGCACGAAGGCGACTGTTAAAGGACTGACGCCCAAGCAACTGCGGGA
CGCGGGCACCCAAATCATCCTCTCCAACACGTACCATCTACTCTTGCAGC
CTGGCAGTGAGCTCGTCCAAGAACAAGGCGGACTGCAGGAGTTCACTGGC
TGGCACGGCCCGATGCTCACTGATAGTGGGGGGGTACCAGATTTTTAGAT
GGAGATGGAGGGAGAGCGGCAAAGGCAGCGCTTGCCACTATCACAATTCG
AAGCAACTTGTCTTCCTCCTGTCCAAAGACCTCCTTCCCCTGGACTGCTA
TCCGTCCTCCATCTCCCACGCCCCCCTCTGCGCCTCCTACCCCTGCTCCT
GCTCCTCCTTCTTCCTGCCTCCATTCACAGTGTCCACCATCATCATCGTC
CTAGCCCTCCTCCTTCCTTCTTCTCTCGATCTGCCTTCCTCTTCCCCTCC
TCTTTCCCTCCCCACCAGCGCGCTTCCTGCTCCTGCCGCCGTCTCCTCTC
TTCCACCTCCTCATCATCCACCCCTCCTCCTTCTACATCATCTCTTCCGC
TCAGTAAACGAGACCGCAAACGCCTACCAAAGGGCCCTCCTCCTCCTCCT
CCTCCTCACGCATCAATGACTTATTTAGAGGAACGACTGAAAGAGCTGCC
GACGCCCACCTATCCCAACTTTGCCTTTAAAACTACGGCAACAGACCCGT
CCGGCAAGACAGCCGCGCGCTGTGGCCTCCTCAGCACGCCCCATGGGGAC
ATGGAGACACCGGCTTTCATATTTTGTGGCACGAAGGCGACTGTTAAAGG
ACTGACGCCCAAGCAACTGCGGGACGCGGGCACCCAAATCATCCTCTCCA
ACACGTACCATCTACTCTTGCAGCCTGGCAGTGAGCTCGTCCAAGAACAA
GGCGGACTGCAGGAGTTCACTGGCTGGCACGGCCCGATGCTCACTGATAG
TGGGGGGGTACCAGATTTTTAG

Synonyms

Publications