jgi.p|Nanoce1779_2|633723, mRNA_9939 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|633723
Unique NamemRNA_9939
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1388
Alignment locationscaffold_41:169305..171186 -

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Properties
Property NameValue
TranscriptId633809
TrackFilteredModels2
ProteinId633723
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_41supercontigscaffold_41:169305..171186 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|633723gene_9939Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|633723mRNA_9939-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9939CDS_9939Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9939 ID=mRNA_9939|Name=jgi.p|Nanoce1779_2|633723|organism=Nannochloropsis oceanica|type=mRNA|length=1388bp
GGCGCCGTCGTGTCGGTCTGACCCGCACGAGTCGCGAGAGCGTCTTTGAG
GCCATGCGCCAGCGGCTGCAGCAAGACGAGAAGACCGCGGCCCCGTCCAA
GCGCCAGCTCCGCCTGTCCACCGCTATCTGGACGGTAGTGTCGGACCTCT
TCTACAAGGACGGGATCTGTCCCGCAAAGAAGCGCGACGGCAGCCCCCTC
GTGGACATCACCGAGGTCAACATGAGCATGGACCTGCGCCACGCTGTCAT
CTGGTGGACGCCAGCCGTCCTTCATCACGATCCTGCCCCCCCTCCTCCCT
CCTCCACTTCTTCCTCTCTCCCTCCCTCCTCCTCCTCTTCCTCCCGGCCT
TCCCTCCCCTCCTGGGATGCCGCCCTGCATCTCCGCAAGGCATTGGTCCG
GGAAGTGCAAGCTTCTCTGGATAAAGGGACGAAAAAAATACGCTTTGAGT
GCTGCCGCCGCCTCAAGCTCAAGCGCATGCCGGCGTTGGAGTTCCGCGTG
GACCAGCTTGTGGAAGGCGCCCGGAAGGTCTCTCCCCTACTGGCGGGGTT
GGAGGAGGGAGGGGGGGAGGGAGGGAGGCCGGGGGCGAGGGCGGGTAAAC
AGGGCTTGAGAATGCGGTAGGGAGGGTAGGGAGTGAGGGGGAGTCGAGGG
GAGGGGGCGTAGCCCCAGCAATTTATGTACATAAACATACGTACGTCTAT
ATATATATATAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGACATAC
ACACACATTGGCAGTAAGACACGAAAGTCGAGGCGCTGTTTGACTGCTGC
TGCTTGAGTGCTTGACTGCTGCTGCTTGACTGATGTTGTTATCGTGTCTG
CTGGAGAAGCCTCACGCCGACATCAGGCCTCGCCCGAGCAAGGAAGGGAG
GGGGGATGGGCCCCGAGGGGCGGTAGGATGGCAGGAGGGAGGAAGGCACA
GGCAAAAGGCAGTGAGATCGCGAGGCTAGAGACCGAGGCAAAGGTATTGA
GATCGAGAGGCGATGAGATTAATAGCACGATGCAAAGGCCGAATCAAAAG
CAGAGGGAAGAGGCGAAAGGCAGAGTCATCAAAAGCAGCGGCAGTGGCAT
CAAGGACCAAAGCAGAGAGCAACAAAAACATGATCGAGGCCACGCCGACT
CCTGCCCTCCGCGTCTCGTCGGATCTCGTGGCGGCGTCTCTTTCTTCCTC
GTTATTATTTACTCCGTGCGCTGGTTCTGACTAACCCTACTTTGACTTGT
TTCGATCCCTCCCACCCTCACTCACTCCCTCCTGCTTCCCACATAGATAT
GTACATAAATACCTGGCCCCCTCCCTCCCACCCTCCCTCCCTCCCTCAGA
ACGTGCCGAAAGAGGCGCTGGGAGGGGGAGGGGGAGGG
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protein sequence of jgi.p|Nanoce1779_2|633723

>mRNA_9939-protein ID=mRNA_9939-protein|Name=jgi.p|Nanoce1779_2|633723|organism=Nannochloropsis oceanica|type=polypeptide|length=189bp
MRQRLQQDEKTAAPSKRQLRLSTAIWTVVSDLFYKDGICPAKKRDGSPLV
DITEVNMSMDLRHAVIWWTPAVLHHDPAPPPPSSTSSSLPPSSSSSSRPS
LPSWDAALHLRKALVREVQASLDKGTKKIRFECCRRLKLKRMPALEFRVD
QLVEGARKVSPLLAGLEEGGGEGGRPGARAGKQGLRMR*
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mRNA from alignment at scaffold_41:169305..171186-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9939 ID=mRNA_9939|Name=jgi.p|Nanoce1779_2|633723|organism=Nannochloropsis oceanica|type=mRNA|length=1882bp|location=Sequence derived from alignment at scaffold_41:169305..171186- (Nannochloropsis oceanica)
GGCGCCGTCGTGTCGGTCTGACCCGCACGAGTCGCGAGAGCGTCTTTGAG
GCCATGCGCCAGCGGCTGCAGCAAGACGAGAAGACCGCGGCCCCGTCCAA
GCGCCAGCTCCGCCTGTCCACCGGTACTGAAACCGCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCGTCCTCTCATACACTTACCTTTCCCTCCCCCCTT
CCCCCCCCCTCCATTCCTCCTTTGTCCCCCCAGCTATCTGGACGGTAGTG
TCGGACCTCTTCTACAAGGACGGGATCTGTCCCGCAAAGAAGCGCGACGG
CAGCCCCCTCGTGGACATCACCGAGGTCAACATGAGCATGGTTCGTCCCC
CTCCCTCCCTCCCTCCCTCCCTTCCACGCACACCAACTCGCTTTCCCATC
TGTGCACCTTATCTTTCTCTCCCTTCTCAACGACCTCCATCGCTCTTCCA
TCCATTCGCCCCTCCCTCCTTCTCTCTCTCCTTCCCTGCCTCCCCCCCCC
TTCAGGACCTGCGCCACGCTGTCATCTGGTGGACGCCAGCCGTCCTTCAT
CACGATCCTGCCCCCCCTCCTCCCTCCTCCACTTCTTCCTCTCTCCCTCC
CTCCTCCTCCTCTTCCTCCCGGCCTTCCCTCCCCTCCTGGGATGCCGCCC
TGCATCTCCGCAAGGCATTGGTCCGGGAAGTGCAAGCTTCTCTGGATAAA
GGGACGAAAAAAATACGCTTTGAGTGCTGCCGCCGCCTCAAGCTCAAGGT
ACGGCGCATCCCTGCCCGTACTTCATGCCCTCCCCCTCTTCATTGCTCCC
CCTTCGTCCTTTCTTTCTCCTCTCCCTCCTCCCCTCCCTCCCTTCCTCCC
TTAATCTCCCCACATGCCCGCGTCTTGAAGCTCGTCGAATCGACATAACT
CGTGTGTCCTCTTTTTCACTCCCTCCCTCCCTCCCTCCTCTCCTCCTACC
CTCCTTCCCTCTAACAGCGCATGCCGGCGTTGGAGTTCCGCGTGGACCAG
CTTGTGGAAGGCGCCCGGAAGGTCTCTCCCCTACTGGCGGGGTTGGAGGA
GGGAGGGGGGGAGGGAGGGAGGCCGGGGGCGAGGGCGGGTAAACAGGGCT
TGAGAATGCGGTAGGGAGGGTAGGGAGTGAGGGGGAGTCGAGGGGAGGGG
GCGTAGCCCCAGCAATTTATGTACATAAACATACGTACGTCTATATATAT
ATATAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGACATACACACAC
ATTGGCAGTAAGACACGAAAGTCGAGGCGCTGTTTGACTGCTGCTGCTTG
AGTGCTTGACTGCTGCTGCTTGACTGATGTTGTTATCGTGTCTGCTGGAG
AAGCCTCACGCCGACATCAGGCCTCGCCCGAGCAAGGAAGGGAGGGGGGA
TGGGCCCCGAGGGGCGGTAGGATGGCAGGAGGGAGGAAGGCACAGGCAAA
AGGCAGTGAGATCGCGAGGCTAGAGACCGAGGCAAAGGTATTGAGATCGA
GAGGCGATGAGATTAATAGCACGATGCAAAGGCCGAATCAAAAGCAGAGG
GAAGAGGCGAAAGGCAGAGTCATCAAAAGCAGCGGCAGTGGCATCAAGGA
CCAAAGCAGAGAGCAACAAAAACATGATCGAGGCCACGCCGACTCCTGCC
CTCCGCGTCTCGTCGGATCTCGTGGCGGCGTCTCTTTCTTCCTCGTTATT
ATTTACTCCGTGCGCTGGTTCTGACTAACCCTACTTTGACTTGTTTCGAT
CCCTCCCACCCTCACTCACTCCCTCCTGCTTCCCACATAGATATGTACAT
AAATACCTGGCCCCCTCCCTCCCACCCTCCCTCCCTCCCTCAGAACGTGC
CGAAAGAGGCGCTGGGAGGGGGAGGGGGAGGG
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Coding sequence (CDS) from alignment at scaffold_41:169305..171186-

>mRNA_9939 ID=mRNA_9939|Name=jgi.p|Nanoce1779_2|633723|organism=Nannochloropsis oceanica|type=CDS|length=2268bp|location=Sequence derived from alignment at scaffold_41:169305..171186- (Nannochloropsis oceanica)
CGCATGCCGGCGTTGGAGTTCCGCGTGGACCAGCTTGTGGAAGGCGCCCG
GAAGGTCTCTCCCCTACTGGCGGGGTTGGAGGAGGGAGGGGGGGAGGGAG
GGAGGCCGGGGGCGAGGGCGGGTAAACAGGGCTTGAGAATGCGGTAGGAC
CTGCGCCACGCTGTCATCTGGTGGACGCCAGCCGTCCTTCATCACGATCC
TGCCCCCCCTCCTCCCTCCTCCACTTCTTCCTCTCTCCCTCCCTCCTCCT
CCTCTTCCTCCCGGCCTTCCCTCCCCTCCTGGGATGCCGCCCTGCATCTC
CGCAAGGCATTGGTCCGGGAAGTGCAAGCTTCTCTGGATAAAGGGACGAA
AAAAATACGCTTTGAGTGCTGCCGCCGCCTCAAGCTCAAGCTATCTGGAC
GGTAGTGTCGGACCTCTTCTACAAGGACGGGATCTGTCCCGCAAAGAAGC
GCGACGGCAGCCCCCTCGTGGACATCACCGAGGTCAACATGAGCATGATG
CGCCAGCGGCTGCAGCAAGACGAGAAGACCGCGGCCCCGTCCAAGCGCCA
GCTCCGCCTGTCCACCGCGCATGCCGGCGTTGGAGTTCCGCGTGGACCAG
CTTGTGGAAGGCGCCCGGAAGGTCTCTCCCCTACTGGCGGGGTTGGAGGA
GGGAGGGGGGGAGGGAGGGAGGCCGGGGGCGAGGGCGGGTAAACAGGGCT
TGAGAATGCGGTAGGACCTGCGCCACGCTGTCATCTGGTGGACGCCAGCC
GTCCTTCATCACGATCCTGCCCCCCCTCCTCCCTCCTCCACTTCTTCCTC
TCTCCCTCCCTCCTCCTCCTCTTCCTCCCGGCCTTCCCTCCCCTCCTGGG
ATGCCGCCCTGCATCTCCGCAAGGCATTGGTCCGGGAAGTGCAAGCTTCT
CTGGATAAAGGGACGAAAAAAATACGCTTTGAGTGCTGCCGCCGCCTCAA
GCTCAAGCTATCTGGACGGTAGTGTCGGACCTCTTCTACAAGGACGGGAT
CTGTCCCGCAAAGAAGCGCGACGGCAGCCCCCTCGTGGACATCACCGAGG
TCAACATGAGCATGATGCGCCAGCGGCTGCAGCAAGACGAGAAGACCGCG
GCCCCGTCCAAGCGCCAGCTCCGCCTGTCCACCGCGCATGCCGGCGTTGG
AGTTCCGCGTGGACCAGCTTGTGGAAGGCGCCCGGAAGGTCTCTCCCCTA
CTGGCGGGGTTGGAGGAGGGAGGGGGGGAGGGAGGGAGGCCGGGGGCGAG
GGCGGGTAAACAGGGCTTGAGAATGCGGTAGGACCTGCGCCACGCTGTCA
TCTGGTGGACGCCAGCCGTCCTTCATCACGATCCTGCCCCCCCTCCTCCC
TCCTCCACTTCTTCCTCTCTCCCTCCCTCCTCCTCCTCTTCCTCCCGGCC
TTCCCTCCCCTCCTGGGATGCCGCCCTGCATCTCCGCAAGGCATTGGTCC
GGGAAGTGCAAGCTTCTCTGGATAAAGGGACGAAAAAAATACGCTTTGAG
TGCTGCCGCCGCCTCAAGCTCAAGCTATCTGGACGGTAGTGTCGGACCTC
TTCTACAAGGACGGGATCTGTCCCGCAAAGAAGCGCGACGGCAGCCCCCT
CGTGGACATCACCGAGGTCAACATGAGCATGATGCGCCAGCGGCTGCAGC
AAGACGAGAAGACCGCGGCCCCGTCCAAGCGCCAGCTCCGCCTGTCCACC
GCGCATGCCGGCGTTGGAGTTCCGCGTGGACCAGCTTGTGGAAGGCGCCC
GGAAGGTCTCTCCCCTACTGGCGGGGTTGGAGGAGGGAGGGGGGGAGGGA
GGGAGGCCGGGGGCGAGGGCGGGTAAACAGGGCTTGAGAATGCGGTAGGA
CCTGCGCCACGCTGTCATCTGGTGGACGCCAGCCGTCCTTCATCACGATC
CTGCCCCCCCTCCTCCCTCCTCCACTTCTTCCTCTCTCCCTCCCTCCTCC
TCCTCTTCCTCCCGGCCTTCCCTCCCCTCCTGGGATGCCGCCCTGCATCT
CCGCAAGGCATTGGTCCGGGAAGTGCAAGCTTCTCTGGATAAAGGGACGA
AAAAAATACGCTTTGAGTGCTGCCGCCGCCTCAAGCTCAAGCTATCTGGA
CGGTAGTGTCGGACCTCTTCTACAAGGACGGGATCTGTCCCGCAAAGAAG
CGCGACGGCAGCCCCCTCGTGGACATCACCGAGGTCAACATGAGCATGAT
GCGCCAGCGGCTGCAGCAAGACGAGAAGACCGCGGCCCCGTCCAAGCGCC
AGCTCCGCCTGTCCACCG
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Synonyms
Publications