jgi.p|Nanoce1779_2|608419, mRNA_9937 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|608419
Unique Name	mRNA_9937
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	643
Alignment location	scaffold_41:167918..169434 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	608505
Track	FilteredModels2
ProteinId	608419

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_41	supercontig	scaffold_41:167918..169434 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|608419	gene_9937	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|608419	mRNA_9937-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9937	CDS_9937	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_41:167918..169434+
coding sequence from alignment at scaffold_41:167918..169434+

mRNA sequence

>mRNA_9937 ID=mRNA_9937|Name=jgi.p|Nanoce1779_2|608419|organism=Nannochloropsis oceanica|type=mRNA|length=643bp
CAGCCGCCCTCACCGTCCGAGACACCCCCCCCCCCTCTCAGGCCAGGCCA
GCATCATGGCCATCACATTGGTGGACGAGATGCATGCCCATCCGTGGGAG
AGGTACAGTGCTTTTCTTGGCCGCTTCCTCCCTTTTCTCGTCTTTGGCAT
CTCCATCCTAGGCTTCATCCTACACAAGTCCATCGGCACGCAGCTCGCCA
TGTTCTTCATCTCCTTCTTCATCGCCCTCCTAGAGGCCCCGTGGGTGTAC
GCGCTCTTTCCGCCTTGCTACCGCGTCCGGGACAAGCTCATCGAAGACCT
GGGGTTCAGCAAGGGCTGGGTGCGCGGCGTCACGTATGCGGCCTTTTCCA
TCATTGCTTACCTGCCTCGACCAACCATCGCCATCCTGTCCGGCCTCCTC
CTAGACCTGGCCGCCGTCCTCTACACCTGCTCCTCCCTCTTCGCCGACGA
AACCATCGGGGAGGAGAACAAATTTGAGCAAGCGATGCCACAGCCGTCCT
CTACCTACCAGCCCCCTCCCCCTCCCCCTCCCAGCGCCTCTTTCGGCACG
TTCTGAGGGAGGGAGGGAGGGTGGGAGGGAGGGGGCCAGGTATTTATGTA
CATATCTATGTGGGAAGCAGGAGGGAGTGAGTGAGGGTGGGAG

protein sequence of jgi.p|Nanoce1779_2|608419

>mRNA_9937-protein ID=mRNA_9937-protein|Name=jgi.p|Nanoce1779_2|608419|organism=Nannochloropsis oceanica|type=polypeptide|length=167bp
MAITLVDEMHAHPWERYSAFLGRFLPFLVFGISILGFILHKSIGTQLAMF
FISFFIALLEAPWVYALFPPCYRVRDKLIEDLGFSKGWVRGVTYAAFSII
AYLPRPTIAILSGLLLDLAAVLYTCSSLFADETIGEENKFEQAMPQPSST
YQPPPPPPPSASFGTF*

mRNA from alignment at scaffold_41:167918..169434+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9937 ID=mRNA_9937|Name=jgi.p|Nanoce1779_2|608419|organism=Nannochloropsis oceanica|type=mRNA|length=1517bp|location=Sequence derived from alignment at scaffold_41:167918..169434+ (Nannochloropsis oceanica)
CAGCCGCCCTCACCGTCCGAGACACCCCCCCCCCCTCTCAGGCCAGGCCA
GCATCATGGCCATCACATTGGTGGACGAGATGCATGCCCATCCGTGGGAG
AGGTACGTCATTGGGCATTTTTTCGTTTCTATTTGCGTCAATTTTCCGGG
TTTTTCAGAAGAGGGAGAGCGCACCAACCCGCTTACCACCCCCCACTCGC
TCCACTCGACAAACCCCTTCCTCCTTCCCTCCCTCCGTTTCTTCGTGCTA
ACACACAACAGGTACAGTGCTTTTCTTGGCCGCTTCCTCCCTTTTCTCGT
CTTTGGCATCTCCATCCTAGGCTTCATCCTACACAAGTCCATCGGTACGT
GTTTTTCCCTCCTTCCTCTTTCCCTTCTTACCTCCATCCTTCACTCTGCT
CTACCGCTGCTCATCCTGTCTCCTTCCCTCCCTTCCCCCCTCCCTCAGGC
ACGCAGCTCGCCATGTTCTTCATCTCCTTCTTCATCGCCCTCCTAGAGGC
CCCGTGGGTGTACGCGCTCTTTCCGCCTTGCTACCGCGTCCGGGACAAGT
AGGGAGGGAGGGAGAGAGGGAGGGAGGGAGGGATGGGGGGGGAGAAGGAA
GAAATGAAAAATTGCTTGCGGGCCAATGAGGGAGTCACATGTATTTACAT
ACTATCGATTGGCTAGAGCCAGCTGGGAAGGGGGTTTACGGTTGGTCGCC
TTTCGGAAGGCATGGACGGACGGGTGGTCAGTGGCATCCACTCATCCACC
CACCCCTCCTTCCATCCTCTCCTTCCTCCTTCCTCCTTCCTCCTTCCTCC
TCTGATGGTATCCCCCGTATTCTCTCTCCCCCTCTCCCTCCCCTCTTCAG
GCTCATCGAAGACCTGGGGTTCAGCAAGGGCTGGGTGCGCGGCGTCACGT
ATGCGGCCTTTTCCATCATTGCTTACCTGCCTCGACCAAGTAGGGAGGGA
GGGCGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAACGAAGTAGAGTTAT
TGGCGCGTCAGCTTCTATCCTTGTCAGCACCTTGAAGTGGCCCTTCTGAT
CCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCACCTAACCCTACCCCTTC
CAGCCATCGCCATCCTGTCCGGCCTCCTCCTAGACCTGGCCGCCGTCCTC
TACACCTGCTCCTCCCTCTTCGCCGACGAAACCATCGGGTACGCCCCCTT
CCTCCTCTGAACACCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTGACCG
TGACAGCTCGCGGAGCCCACCAAGATCCTTCTCACAAACCCACCCCCGCC
CTCCCTCCCTCCCTCCCTTCTTTCATTCCATAGGGAGGAGAACAAATTTG
AGCAAGCGATGCCACAGCCGTCCTCTACCTACCAGCCCCCTCCCCCTCCC
CCTCCCAGCGCCTCTTTCGGCACGTTCTGAGGGAGGGAGGGAGGGTGGGA
GGGAGGGGGCCAGGTATTTATGTACATATCTATGTGGGAAGCAGGAGGGA
GTGAGTGAGGGTGGGAG

Coding sequence (CDS) from alignment at scaffold_41:167918..169434+

>mRNA_9937 ID=mRNA_9937|Name=jgi.p|Nanoce1779_2|608419|organism=Nannochloropsis oceanica|type=CDS|length=3006bp|location=Sequence derived from alignment at scaffold_41:167918..169434+ (Nannochloropsis oceanica)
ATGGCCATCACATTGGTGGACGAGATGCATGCCCATCCGTGGGAGAGGTA
CAGTGCTTTTCTTGGCCGCTTCCTCCCTTTTCTCGTCTTTGGCATCTCCA
TCCTAGGCTTCATCCTACACAAGTCCATCGGCACGCAGCTCGCCATGTTC
TTCATCTCCTTCTTCATCGCCCTCCTAGAGGCCCCGTGGGTGTACGCGCT
CTTTCCGCCTTGCTACCGCGTCCGGGACAAGCTCATCGAAGACCTGGGGT
TCAGCAAGGGCTGGGTGCGCGGCGTCACGTATGCGGCCTTTTCCATCATT
GCTTACCTGCCTCGACCAACCATCGCCATCCTGTCCGGCCTCCTCCTAGA
CCTGGCCGCCGTCCTCTACACCTGCTCCTCCCTCTTCGCCGACGAAACCA
TCGGGGAGGAGAACAAATTTGAGCAAGCGATGCCACAGCCGTCCTCTACC
TACCAGCCCCCTCCCCCTCCCCCTCCCAGCGCCTCTTTCGGCACGTTCTG
AATGGCCATCACATTGGTGGACGAGATGCATGCCCATCCGTGGGAGAGGT
ACAGTGCTTTTCTTGGCCGCTTCCTCCCTTTTCTCGTCTTTGGCATCTCC
ATCCTAGGCTTCATCCTACACAAGTCCATCGGCACGCAGCTCGCCATGTT
CTTCATCTCCTTCTTCATCGCCCTCCTAGAGGCCCCGTGGGTGTACGCGC
TCTTTCCGCCTTGCTACCGCGTCCGGGACAAGCTCATCGAAGACCTGGGG
TTCAGCAAGGGCTGGGTGCGCGGCGTCACGTATGCGGCCTTTTCCATCAT
TGCTTACCTGCCTCGACCAACCATCGCCATCCTGTCCGGCCTCCTCCTAG
ACCTGGCCGCCGTCCTCTACACCTGCTCCTCCCTCTTCGCCGACGAAACC
ATCGGGGAGGAGAACAAATTTGAGCAAGCGATGCCACAGCCGTCCTCTAC
CTACCAGCCCCCTCCCCCTCCCCCTCCCAGCGCCTCTTTCGGCACGTTCT
GAATGGCCATCACATTGGTGGACGAGATGCATGCCCATCCGTGGGAGAGG
TACAGTGCTTTTCTTGGCCGCTTCCTCCCTTTTCTCGTCTTTGGCATCTC
CATCCTAGGCTTCATCCTACACAAGTCCATCGGCACGCAGCTCGCCATGT
TCTTCATCTCCTTCTTCATCGCCCTCCTAGAGGCCCCGTGGGTGTACGCG
CTCTTTCCGCCTTGCTACCGCGTCCGGGACAAGCTCATCGAAGACCTGGG
GTTCAGCAAGGGCTGGGTGCGCGGCGTCACGTATGCGGCCTTTTCCATCA
TTGCTTACCTGCCTCGACCAACCATCGCCATCCTGTCCGGCCTCCTCCTA
GACCTGGCCGCCGTCCTCTACACCTGCTCCTCCCTCTTCGCCGACGAAAC
CATCGGGGAGGAGAACAAATTTGAGCAAGCGATGCCACAGCCGTCCTCTA
CCTACCAGCCCCCTCCCCCTCCCCCTCCCAGCGCCTCTTTCGGCACGTTC
TGAATGGCCATCACATTGGTGGACGAGATGCATGCCCATCCGTGGGAGAG
GTACAGTGCTTTTCTTGGCCGCTTCCTCCCTTTTCTCGTCTTTGGCATCT
CCATCCTAGGCTTCATCCTACACAAGTCCATCGGCACGCAGCTCGCCATG
TTCTTCATCTCCTTCTTCATCGCCCTCCTAGAGGCCCCGTGGGTGTACGC
GCTCTTTCCGCCTTGCTACCGCGTCCGGGACAAGCTCATCGAAGACCTGG
GGTTCAGCAAGGGCTGGGTGCGCGGCGTCACGTATGCGGCCTTTTCCATC
ATTGCTTACCTGCCTCGACCAACCATCGCCATCCTGTCCGGCCTCCTCCT
AGACCTGGCCGCCGTCCTCTACACCTGCTCCTCCCTCTTCGCCGACGAAA
CCATCGGGGAGGAGAACAAATTTGAGCAAGCGATGCCACAGCCGTCCTCT
ACCTACCAGCCCCCTCCCCCTCCCCCTCCCAGCGCCTCTTTCGGCACGTT
CTGAATGGCCATCACATTGGTGGACGAGATGCATGCCCATCCGTGGGAGA
GGTACAGTGCTTTTCTTGGCCGCTTCCTCCCTTTTCTCGTCTTTGGCATC
TCCATCCTAGGCTTCATCCTACACAAGTCCATCGGCACGCAGCTCGCCAT
GTTCTTCATCTCCTTCTTCATCGCCCTCCTAGAGGCCCCGTGGGTGTACG
CGCTCTTTCCGCCTTGCTACCGCGTCCGGGACAAGCTCATCGAAGACCTG
GGGTTCAGCAAGGGCTGGGTGCGCGGCGTCACGTATGCGGCCTTTTCCAT
CATTGCTTACCTGCCTCGACCAACCATCGCCATCCTGTCCGGCCTCCTCC
TAGACCTGGCCGCCGTCCTCTACACCTGCTCCTCCCTCTTCGCCGACGAA
ACCATCGGGGAGGAGAACAAATTTGAGCAAGCGATGCCACAGCCGTCCTC
TACCTACCAGCCCCCTCCCCCTCCCCCTCCCAGCGCCTCTTTCGGCACGT
TCTGAATGGCCATCACATTGGTGGACGAGATGCATGCCCATCCGTGGGAG
AGGTACAGTGCTTTTCTTGGCCGCTTCCTCCCTTTTCTCGTCTTTGGCAT
CTCCATCCTAGGCTTCATCCTACACAAGTCCATCGGCACGCAGCTCGCCA
TGTTCTTCATCTCCTTCTTCATCGCCCTCCTAGAGGCCCCGTGGGTGTAC
GCGCTCTTTCCGCCTTGCTACCGCGTCCGGGACAAGCTCATCGAAGACCT
GGGGTTCAGCAAGGGCTGGGTGCGCGGCGTCACGTATGCGGCCTTTTCCA
TCATTGCTTACCTGCCTCGACCAACCATCGCCATCCTGTCCGGCCTCCTC
CTAGACCTGGCCGCCGTCCTCTACACCTGCTCCTCCCTCTTCGCCGACGA
AACCATCGGGGAGGAGAACAAATTTGAGCAAGCGATGCCACAGCCGTCCT
CTACCTACCAGCCCCCTCCCCCTCCCCCTCCCAGCGCCTCTTTCGGCACG
TTCTGA

Synonyms

Publications