jgi.p|Nanoce1779_2|608393, mRNA_9932 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|608393
Unique NamemRNA_9932
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1593
Alignment locationscaffold_41:149103..150695 +

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Properties
Property NameValue
TranscriptId608479
TrackFilteredModels2
ProteinId608393
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_41supercontigscaffold_41:149103..150695 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608393gene_9932Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608393mRNA_9932-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9932CDS_9932Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9932 ID=mRNA_9932|Name=jgi.p|Nanoce1779_2|608393|organism=Nannochloropsis oceanica|type=mRNA|length=1593bp
TGGCGGAACTTCCCCTGCTCAATGTACAAACCTGACTGATTACCGGTGCG
ATGGAAATACCTATGTAAGCACCAGCGGAGGAAACACCAGCTGGTTTGAC
TGCGCGAGTTTTTGTGACGATAATATCGGCACCACTTTAGGGTATGGTCA
ATTTGACAGCACCAATAGCGTATGCTACTGTGGAGGCAATACTTCGTGCC
CTCTTTTCACACCTGATCTTGGCTTCATCCAATTCATGTACAATAGCGGT
GACGAAGACTGTCCAACTTTGACAGTGTCGCCCACACAACAGCCTTCTAC
ACAGCCCTCCAACAGCCCCTCTGGCGCTACTGGCGCTCCCACCTCCTATC
CTACCTTTGCCCCGCCGCCGCCCGACGCACCTGTCGAGATCCTGGGGCAA
GGATTCGTGTGCGGGCCAGAGGTCACCCTTGTCAGTAGACGTCATGCCAT
GGCAGCATCAGGGGCCGATATGGAGAGGACGGAGCGAGAGAAGCAGGCAG
GAGAGGAGTTCTTATCGGAAATTGGCCGGGACTATCATCAGCAACAGGGC
GCCTTGGATGCTGCATGGACACCGGAGACCTGTTTTGCTGCCTGCGCTCA
GCGATTGGGTAATCCTCCTTCCTTCGTGATCAATATCTACAATGACGGCG
GACAGCAAGTGTGCACCTGTTGTCGCTCCTGCGATGGGACCCGCTATGTC
CCTTCTGCCCAAACCTTTGCAGCATGTGGAGGCGTTGCAATGAATCTGAG
CCTCACGGCTAAGGCGAGCCGTGCAAAGGTCGGTGCACGGCGTGGGGGCA
AGATTACGTACACCGTCCGACTCAAGAACAGGCAGGCGTTTGAAAGTGGG
GTCGGCATGCGCATAGTCCTGCCCCCTCACATGACTTATGTCAGGAGCAA
ATCCAAGCCCCCGGTGTACAGCAATGTCTCGTTGTCGGCCGCAGGTATGG
GCAGGTTGTTGTTGCAGCAAGGTCAGAAATGGGGGGCCTCGGCTGCTGCT
AATGACACCCTCGTCGATTGGCCCGTGGTGCCCATGCCTGCTAAAAAGCG
ACGCAGGTTTATAGTCTACATGCGCGTGAAAGAGAGCGCACCGGTAGGGA
CATCGTTGGTGTTCACGAGCTATGTCTACCAAAGCACTCCCACGGGCATC
ACCTTTTGTGATAAATACGCCGAGGACTTGACGGTGTTAGTCAAAAAATA
AAAATTATACCCCGATCACGGGAAAAGGATTCGCCCACCGGGGAATGAAA
GTAACATGGTATCCTAACGTAAAGGAGTCGGGAGACATACATCAACGGGT
GGAAAGAGACAATTTCCAGAATATTTGTAGCATGAAGGTTGAGAACGCAA
GCGGTGCAACATAGAGAGAAAGAAATAGCGGGATAGCGGGGGAGCGAAGA
GAAGTAGGGAACAATGTTGAGTGAGACCTAAAATTGGGCAAAAAATCGAC
GTGAGTATGTTTCGATTGAAAGTCATACAGACGAAAAGTTAAGCACATCC
TCTTGACCTGATAGCGGACATGCTTATGCCATTGATCGCCTCACTTTGAA
GTTCAGAGGAATGCCTTCCATTGGAAGGTGGAGGAGGAGGCGG
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protein sequence of jgi.p|Nanoce1779_2|608393

>mRNA_9932-protein ID=mRNA_9932-protein|Name=jgi.p|Nanoce1779_2|608393|organism=Nannochloropsis oceanica|type=polypeptide|length=322bp
MYNSGDEDCPTLTVSPTQQPSTQPSNSPSGATGAPTSYPTFAPPPPDAPV
EILGQGFVCGPEVTLVSRRHAMAASGADMERTEREKQAGEEFLSEIGRDY
HQQQGALDAAWTPETCFAACAQRLGNPPSFVINIYNDGGQQVCTCCRSCD
GTRYVPSAQTFAACGGVAMNLSLTAKASRAKVGARRGGKITYTVRLKNRQ
AFESGVGMRIVLPPHMTYVRSKSKPPVYSNVSLSAAGMGRLLLQQGQKWG
ASAAANDTLVDWPVVPMPAKKRRRFIVYMRVKESAPVGTSLVFTSYVYQS
TPTGITFCDKYAEDLTVLVKK*
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mRNA from alignment at scaffold_41:149103..150695+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9932 ID=mRNA_9932|Name=jgi.p|Nanoce1779_2|608393|organism=Nannochloropsis oceanica|type=mRNA|length=1593bp|location=Sequence derived from alignment at scaffold_41:149103..150695+ (Nannochloropsis oceanica)
TGGCGGAACTTCCCCTGCTCAATGTACAAACCTGACTGATTACCGGTGCG
ATGGAAATACCTATGTAAGCACCAGCGGAGGAAACACCAGCTGGTTTGAC
TGCGCGAGTTTTTGTGACGATAATATCGGCACCACTTTAGGGTATGGTCA
ATTTGACAGCACCAATAGCGTATGCTACTGTGGAGGCAATACTTCGTGCC
CTCTTTTCACACCTGATCTTGGCTTCATCCAATTCATGTACAATAGCGGT
GACGAAGACTGTCCAACTTTGACAGTGTCGCCCACACAACAGCCTTCTAC
ACAGCCCTCCAACAGCCCCTCTGGCGCTACTGGCGCTCCCACCTCCTATC
CTACCTTTGCCCCGCCGCCGCCCGACGCACCTGTCGAGATCCTGGGGCAA
GGATTCGTGTGCGGGCCAGAGGTCACCCTTGTCAGTAGACGTCATGCCAT
GGCAGCATCAGGGGCCGATATGGAGAGGACGGAGCGAGAGAAGCAGGCAG
GAGAGGAGTTCTTATCGGAAATTGGCCGGGACTATCATCAGCAACAGGGC
GCCTTGGATGCTGCATGGACACCGGAGACCTGTTTTGCTGCCTGCGCTCA
GCGATTGGGTAATCCTCCTTCCTTCGTGATCAATATCTACAATGACGGCG
GACAGCAAGTGTGCACCTGTTGTCGCTCCTGCGATGGGACCCGCTATGTC
CCTTCTGCCCAAACCTTTGCAGCATGTGGAGGCGTTGCAATGAATCTGAG
CCTCACGGCTAAGGCGAGCCGTGCAAAGGTCGGTGCACGGCGTGGGGGCA
AGATTACGTACACCGTCCGACTCAAGAACAGGCAGGCGTTTGAAAGTGGG
GTCGGCATGCGCATAGTCCTGCCCCCTCACATGACTTATGTCAGGAGCAA
ATCCAAGCCCCCGGTGTACAGCAATGTCTCGTTGTCGGCCGCAGGTATGG
GCAGGTTGTTGTTGCAGCAAGGTCAGAAATGGGGGGCCTCGGCTGCTGCT
AATGACACCCTCGTCGATTGGCCCGTGGTGCCCATGCCTGCTAAAAAGCG
ACGCAGGTTTATAGTCTACATGCGCGTGAAAGAGAGCGCACCGGTAGGGA
CATCGTTGGTGTTCACGAGCTATGTCTACCAAAGCACTCCCACGGGCATC
ACCTTTTGTGATAAATACGCCGAGGACTTGACGGTGTTAGTCAAAAAATA
AAAATTATACCCCGATCACGGGAAAAGGATTCGCCCACCGGGGAATGAAA
GTAACATGGTATCCTAACGTAAAGGAGTCGGGAGACATACATCAACGGGT
GGAAAGAGACAATTTCCAGAATATTTGTAGCATGAAGGTTGAGAACGCAA
GCGGTGCAACATAGAGAGAAAGAAATAGCGGGATAGCGGGGGAGCGAAGA
GAAGTAGGGAACAATGTTGAGTGAGACCTAAAATTGGGCAAAAAATCGAC
GTGAGTATGTTTCGATTGAAAGTCATACAGACGAAAAGTTAAGCACATCC
TCTTGACCTGATAGCGGACATGCTTATGCCATTGATCGCCTCACTTTGAA
GTTCAGAGGAATGCCTTCCATTGGAAGGTGGAGGAGGAGGCGG
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Coding sequence (CDS) from alignment at scaffold_41:149103..150695+

>mRNA_9932 ID=mRNA_9932|Name=jgi.p|Nanoce1779_2|608393|organism=Nannochloropsis oceanica|type=CDS|length=966bp|location=Sequence derived from alignment at scaffold_41:149103..150695+ (Nannochloropsis oceanica)
ATGTACAATAGCGGTGACGAAGACTGTCCAACTTTGACAGTGTCGCCCAC
ACAACAGCCTTCTACACAGCCCTCCAACAGCCCCTCTGGCGCTACTGGCG
CTCCCACCTCCTATCCTACCTTTGCCCCGCCGCCGCCCGACGCACCTGTC
GAGATCCTGGGGCAAGGATTCGTGTGCGGGCCAGAGGTCACCCTTGTCAG
TAGACGTCATGCCATGGCAGCATCAGGGGCCGATATGGAGAGGACGGAGC
GAGAGAAGCAGGCAGGAGAGGAGTTCTTATCGGAAATTGGCCGGGACTAT
CATCAGCAACAGGGCGCCTTGGATGCTGCATGGACACCGGAGACCTGTTT
TGCTGCCTGCGCTCAGCGATTGGGTAATCCTCCTTCCTTCGTGATCAATA
TCTACAATGACGGCGGACAGCAAGTGTGCACCTGTTGTCGCTCCTGCGAT
GGGACCCGCTATGTCCCTTCTGCCCAAACCTTTGCAGCATGTGGAGGCGT
TGCAATGAATCTGAGCCTCACGGCTAAGGCGAGCCGTGCAAAGGTCGGTG
CACGGCGTGGGGGCAAGATTACGTACACCGTCCGACTCAAGAACAGGCAG
GCGTTTGAAAGTGGGGTCGGCATGCGCATAGTCCTGCCCCCTCACATGAC
TTATGTCAGGAGCAAATCCAAGCCCCCGGTGTACAGCAATGTCTCGTTGT
CGGCCGCAGGTATGGGCAGGTTGTTGTTGCAGCAAGGTCAGAAATGGGGG
GCCTCGGCTGCTGCTAATGACACCCTCGTCGATTGGCCCGTGGTGCCCAT
GCCTGCTAAAAAGCGACGCAGGTTTATAGTCTACATGCGCGTGAAAGAGA
GCGCACCGGTAGGGACATCGTTGGTGTTCACGAGCTATGTCTACCAAAGC
ACTCCCACGGGCATCACCTTTTGTGATAAATACGCCGAGGACTTGACGGT
GTTAGTCAAAAAATAA
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Synonyms
Publications