jgi.p|Nanoce1779_2|574935, mRNA_993 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|574935
Unique Name	mRNA_993
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	774
Alignment location	scaffold_2:958095..959249 +

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Properties


Property Name	Value
TranscriptId	575021
Track	FilteredModels2
ProteinId	574935

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:958095..959249 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574935	gene_993	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574935	mRNA_993-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_993	CDS_993	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:958095..959249+
coding sequence from alignment at scaffold_2:958095..959249+

mRNA sequence

>mRNA_993 ID=mRNA_993|Name=jgi.p|Nanoce1779_2|574935|organism=Nannochloropsis oceanica|type=mRNA|length=774bp
CTTCCCTCGAAAGTGCCTCTGCCTCCGTCGCCGCTGCTGCAGCTGCCAGC
AGCCCATTACATGATGTTCTTTCTTTGCAATGCTCTTGAGGATGCTGCAG
ATGGAAGCCAGCGCTAATCCCTGCAGAGGCGTGTCCGTGCGTGTGCTGCT
GCTGACAAGCAGCGCTCATACATGGGTGTCGCCGCTCCTCTCCGGAGCCC
TCCCCTACAGGCCCAATCCCTGCTGCGGCTTCTTTGGCGTATACTCTCCT
GAAATAGGACTGAGGTGTCGGCGACGATGGGGGCTGATGGTGGCTATGAA
TGTTCTTAACGTTGGCGCCACCAGGGCTGCCTGCATCGCCCGCGCCAGAC
ACAAAGCGTTTTGGGAACGTGCTACTGTCATTACTGCCCTTGCCGTAATG
CTGCTGCTGCTGTTGGTGATGATAGTGAGACACAGACCGACTTCCTTCCT
CCGCTGGGGTTTCTCCCTTCGTGGCGACAGCTTTATTGCTGCTGCTGCGG
CGGCTGCTGCTGCTACTACCGCTGAAGCCCAACTCGAGCAGCCGCCGGCC
GAGCGAAGACAAAGAAGACACCGCTGATGATGGCGCGGCTTGCGCAGTTT
GAGTTCTAATGGGACTACCTGTGCTAGAATTCCGACTTAGAGTCAAGGGA
GAAGAGGAACCGGATTTTTGCTGGTCGCGATACTGAGTTAGAAGCCTTTT
TTAGTTTGGATGGGAAAAGGAGGAGGATGGATGAGAATTTCTTTTTTGAT
CAGCCTGACGGCAGGTGAATCTCG

protein sequence of jgi.p|Nanoce1779_2|574935

>mRNA_993-protein ID=mRNA_993-protein|Name=jgi.p|Nanoce1779_2|574935|organism=Nannochloropsis oceanica|type=polypeptide|length=166bp
MLLRMLQMEASANPCRGVSVRVLLLTSSAHTWVSPLLSGALPYRPNPCCG
FFGVYSPEIGLRCRRRWGLMVAMNVLNVGATRAACIARARHKAFWERATV
ITALAVMLLLLLVMIVRHRPTSFLRWGFSLRGDSFIAAAAAAAAATTAEA
QLEQPPAERRQRRHR*

mRNA from alignment at scaffold_2:958095..959249+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_993 ID=mRNA_993|Name=jgi.p|Nanoce1779_2|574935|organism=Nannochloropsis oceanica|type=mRNA|length=1155bp|location=Sequence derived from alignment at scaffold_2:958095..959249+ (Nannochloropsis oceanica)
CTTCCCTCGAAAGTGCCTCTGCCTCCGTCGCCGCTGCTGCAGCTGCCAGC
AGCCCATTACATGATGTTCTTTCTTTGCAATGCTCTTGAGGATGCTGCAG
ATGGAAGCCAGCGCTAATCCCTGCAGAGGCGTGTCCGTGCGTGTGCTGCT
GCTGACAAGCAGCGCTCATACATGGGTGTCGCCGCTCCTCTCCGGAGCCC
TCCCCTACAGGCCCAATCCCTGCTGCGGCTTCTTTGGCGTATACTCTCCT
GAAATAGGACTGAGGTGTCGGCGACGATGGGGGCTGATGGTGGCTATGAA
TGTTCTTAACGTTGGCGCCACCAGGGCTGCCTGCATCGCCCGCGCCAGAC
ACAAAGCGTTTTGGGAACGTGCTACTGTCATTACTGCCCTTGCCGTAATG
CTGCTGCTGCTGTTGGTGATGATAGTGAGACACAGACCGACTTCCTTCCT
CCGCTGGGGTTTCTCCCTTCGTGGCGACAGCTTTATTGCTGCTGCTGCGG
CGGCTGCTGCTGCTACTACCGCTGAAGCCCAACTCGAGCAGCCGCCGGCC
GAGCGAAGACAAAGAAGACACCGCTGATGATGGCGCGGCTTGCGCAGTTT
GAGTTCTAATGGGACTACCTGTGCTAGAATTCCGACTTAGAGTCAAGGGA
GAAGAGGAACCGGATTTTTGCTGGTCGCGATACTGAGTTAGAAGCCTTTT
TTAGTTTGGATGGGAAAAGGAGGAGGATGGATGAGAATTTCTTTTTTGAT
CAGCCTATTTTTACGTGTATGCCACGCTCAACGTCGCCCTGTTTTGCCCG
TTCCCTTCCTGAGCATAGACAGACAGGAAATAATCTGCTCGAGCCGTTGT
TGGTCACATTCGTTCTCTACTGCTGCTATACGAAACCCTCACTCTCCTGT
TAGAGGGGGGCTAACAGGTAGTCATCATTCTGCGCCCCTCTCTCTCGTGC
CAAATAGGAGCACAGCAATATCGTTATCATACTCTGACGGTCGATTCATT
GACCAGACACACACATGCAGGCATTGAGCATGGAGCTTTCGAGCGAAATA
AACGCAATGAAAATAGCCATCAATCAGAGCGGCGGCCTTCCGATGACATA
TATACGACAAAATCCCTTTCATATTGCAAACTCACCTGACGGCAGGTGAA
TCTCG

Coding sequence (CDS) from alignment at scaffold_2:958095..959249+

>mRNA_993 ID=mRNA_993|Name=jgi.p|Nanoce1779_2|574935|organism=Nannochloropsis oceanica|type=CDS|length=498bp|location=Sequence derived from alignment at scaffold_2:958095..959249+ (Nannochloropsis oceanica)
ATGCTCTTGAGGATGCTGCAGATGGAAGCCAGCGCTAATCCCTGCAGAGG
CGTGTCCGTGCGTGTGCTGCTGCTGACAAGCAGCGCTCATACATGGGTGT
CGCCGCTCCTCTCCGGAGCCCTCCCCTACAGGCCCAATCCCTGCTGCGGC
TTCTTTGGCGTATACTCTCCTGAAATAGGACTGAGGTGTCGGCGACGATG
GGGGCTGATGGTGGCTATGAATGTTCTTAACGTTGGCGCCACCAGGGCTG
CCTGCATCGCCCGCGCCAGACACAAAGCGTTTTGGGAACGTGCTACTGTC
ATTACTGCCCTTGCCGTAATGCTGCTGCTGCTGTTGGTGATGATAGTGAG
ACACAGACCGACTTCCTTCCTCCGCTGGGGTTTCTCCCTTCGTGGCGACA
GCTTTATTGCTGCTGCTGCGGCGGCTGCTGCTGCTACTACCGCTGAAGCC
CAACTCGAGCAGCCGCCGGCCGAGCGAAGACAAAGAAGACACCGCTGA

Synonyms

Publications