jgi.p|Nanoce1779_2|608379, mRNA_9928 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|608379
Unique NamemRNA_9928
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length271
Alignment locationscaffold_41:131354..131624 +

Link to JBrowse

Properties
Property NameValue
TranscriptId608465
TrackFilteredModels2
ProteinId608379
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_41supercontigscaffold_41:131354..131624 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608379gene_9928Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608379mRNA_9928-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9928CDS_9928Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9928 ID=mRNA_9928|Name=jgi.p|Nanoce1779_2|608379|organism=Nannochloropsis oceanica|type=mRNA|length=271bp
GATGTTTTTCGGTCTCGTAGTGCTTGCATACGATTTAGTAGCAGCTGCTG
TTGCTACTACTGTTGCTGTTGCTGTTGCTGTTGTTGCTGTTGTCTTAATC
ACGTGGTTCTTTTCTTGTTTCCTTCGGTTCTTTTTTTGGGAGGCAGGAAT
TTCCCTCCTCGTCTGGTTCGATGTCTTCCCTCCCTCCCTCCCTCTCGCCC
TCCCTCCCTCCTCTTTATCTCTCTTAAATTTTTTCTCACGTGGGTAAGGT
TTAGTAGTCGTTTCATTGATC
back to top

protein sequence of jgi.p|Nanoce1779_2|608379

>mRNA_9928-protein ID=mRNA_9928-protein|Name=jgi.p|Nanoce1779_2|608379|organism=Nannochloropsis oceanica|type=polypeptide|length=82bp
MFFGLVVLAYDLVAAAVATTVAVAVAVVAVVLITWFFSCFLRFFFWEAGI
SLLVWFDVFPPSLPLALPPSSLSLLNFFSRG*
back to top

mRNA from alignment at scaffold_41:131354..131624+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9928 ID=mRNA_9928|Name=jgi.p|Nanoce1779_2|608379|organism=Nannochloropsis oceanica|type=mRNA|length=271bp|location=Sequence derived from alignment at scaffold_41:131354..131624+ (Nannochloropsis oceanica)
GATGTTTTTCGGTCTCGTAGTGCTTGCATACGATTTAGTAGCAGCTGCTG
TTGCTACTACTGTTGCTGTTGCTGTTGCTGTTGTTGCTGTTGTCTTAATC
ACGTGGTTCTTTTCTTGTTTCCTTCGGTTCTTTTTTTGGGAGGCAGGAAT
TTCCCTCCTCGTCTGGTTCGATGTCTTCCCTCCCTCCCTCCCTCTCGCCC
TCCCTCCCTCCTCTTTATCTCTCTTAAATTTTTTCTCACGTGGGTAAGGT
TTAGTAGTCGTTTCATTGATC
back to top

Coding sequence (CDS) from alignment at scaffold_41:131354..131624+

>mRNA_9928 ID=mRNA_9928|Name=jgi.p|Nanoce1779_2|608379|organism=Nannochloropsis oceanica|type=CDS|length=246bp|location=Sequence derived from alignment at scaffold_41:131354..131624+ (Nannochloropsis oceanica)
ATGTTTTTCGGTCTCGTAGTGCTTGCATACGATTTAGTAGCAGCTGCTGT
TGCTACTACTGTTGCTGTTGCTGTTGCTGTTGTTGCTGTTGTCTTAATCA
CGTGGTTCTTTTCTTGTTTCCTTCGGTTCTTTTTTTGGGAGGCAGGAATT
TCCCTCCTCGTCTGGTTCGATGTCTTCCCTCCCTCCCTCCCTCTCGCCCT
CCCTCCCTCCTCTTTATCTCTCTTAAATTTTTTCTCACGTGGGTAA
back to top
Synonyms
Publications