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Properties
| Property Name | Value |
|---|
| TranscriptId | 633803 |
| Track | FilteredModels2 |
| ProteinId | 633717 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_41 | supercontig | scaffold_41:116732..119762 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_9926 ID=mRNA_9926|Name=jgi.p|Nanoce1779_2|633717|organism=Nannochloropsis oceanica|type=mRNA|length=2878bp
GGAATTCAATACCAGGATATTGTGGTAAAAGTTCTCGAGACGCCCCAGCC
CTCCTTTTCTTCTTCGTCGTCGTCGTCGTCATCCTCCCTCTTCCTCCGCG
TCCTTGTCGGCGACGAGAGTGCTGTCGCCGAGCTCGTCTACCGCTCCACC
CGCAGCACCCACATCCGACGCGGTCGCTTCCTCCTGCTTTCAGGTTTTGT
CAATTGCTTCGATGGCATTATCCAACTGCATTGTGGACCGCGGACCCAAG
ACCTCCAGCCACTGCACAAGCACGGGGGGGCCTCTTTTATCGTGCCAGCC
TCGGCCCGGGCCAATAACCTGTCGGCCATCGTGCATCATGTGGGAGCTAT
TCTCGTCCGCCCCGTCCCTGTCCAAAGGCCTTCCAAGGGATTATTGAACA
TGAATAAAGTATGCCAGAATGCTGAGCATAACTATTTGGACTGTCCTCCC
TATGTTGTGGAGTACGGTCTTCAAGTCCACCAGGGCGTCTGGTACGTCGC
TAGCACCAAACCCCGATCACACGAATCTTTTCTTGAGGCAGCCTCCCGAG
CGCTAGAGGAAGCGACTGGAGAAGATGGGGGTAAGGAAGAGGTGGACTGC
GGGGGCGAGGACGACGACACGGTCTGCGTGGCCCGTCCTTCTCCTCAATC
TTTCCAACTGGCTGCGCATCTGCCCCGAATCACAGAGCTTCACCGTCCAG
CAGAAGCAGCCGACGGCAATACACATGCGTACCATTTTTTTATCGCCACG
ACGGAGGTCGGCAGTTGTGAGACTGAGGAGGATCGTGACAGCAAGGGCGA
CAGTGGCAGCAGCGACAACAGCAGCGTGTTCTCCAACACTACAATTGCGC
TCAATGCCACCTCCACCACTGCCCCCAGCGCTGGCCGCGCTATCGTCTGG
AAAACACGGGAGCAAGTACGGGCCTGCCGTTCGACGAAACAAGGCCTCCA
TGCCTTTCCCCTTGTCGACCAGACACGCAACCTCCTCGAAACGGCCTTGC
GTACGGGTGGTGGCGTGCTAAGTGGACCGGGGTGGGACGAGTTGCATGAG
TACCTGACGAGCGACAATCATAAAGGTGGCCACTCCCACAACCATGTTCA
GACCAACGCATCGGTTGAAGCTCTCTTACATCAAGCTTCTTTGATCAAGC
GCCCGGACATCTTGCCCGTGACTTTGTTGAGTGGATTCTTGGGTGCCGGA
AAAACGACTCTTCTGAAGCATATCCTAAACAATCAGCAGAATTGGCGAGT
GGCGGTGCTGGTCAATGACATGAATGAGCTCAATATTGATGCCGCACTTG
TGTCGCAAGACCGACAGCGTGTACAGGTGGTAGGCAAAGTCCAAGAGGAG
GAACGTATCGTGTCCATGGCGAACGGCTGCATTTGTTGCACGCTACGGGA
GGATCTGCTCGCTCAAATTGTGGATTTGGCGCAGGAGGAGGAATTCGACT
ATTTGTTGATTGAGAGTAGTGGAATTTCGGAGCCTCTGGCTGTGGCTGAA
ACTTTCACCTTTGAGGATGAGCACGGCCGGTCCTTGTCGTCGCTGGCGCG
TTTGGACACGACTGTGACTGTGGTGGATGCGCCAGACCTTCACCGACACT
TGAGAGCGCGGGAGCGGGTAGCGGCGAGCAAAGAACGCGAGGTGTGTCCT
ATTTCAATGGGTGAAGAGGACGACAAGACGCTTGCTGACTTAATGTGTGA
GCAGATCGAATTTGCGGATGTGGTGATCCTGAACAAGATCGATCTGTTGC
CTGCTGTCGGTGCCGTTGATAGCCCCGTGACTGTCTCGTCGACTGGATCA
TTCTCTAAGACCCCTATTACGTCCCTTTCTGCCCTTCGAGCTCTCATTCA
CACGCTCAACCCGGGGGCCAAGGTATTGTCAGCTGAACACGGACGCGTGG
ACGTTCGTGAGATCCTCAATACAGGGCTCTTCTCGCTCGAGAAGGCGCAG
CAAGCTCCGGGTTGGTTGCGAGGATTGCGCGGTGGCAGCAACAGTTCCAT
GGCTCCCCGTGTGCCTGAGACATTGGAGTACGGTGTCTCGAGCTTTTGCT
ACCGCCGGAGCCGCCCTTTCCACCCTGAACGGCTGCATTCCTTGATTTTT
GGGGCCGAAGGGTGTGAATGCAGCGATGGTGATAAGGTTTCGAGTGAGGG
TTGTCTGATATCCCATGTCGGTCGCGATATCTCAGGGGATCGTAAGGCTG
AGCCGTGGCCCCTGCTGCAAGGGACTGGCGTCCACCAGTCAAGCGGCTCT
GCACAGCTCCACCCCCTCCAATCCCTTGTGCGCGTCAAGGGCTACCTGTG
GCTAGCAACACAGATGCAGCAAATGGTCTTCTGGTCCCTGGCAGGGGCTG
TGCACAGTTTCACCTCGCGAGATTATGACCGCTGGCTGTGTGCCACGGAC
CCAGTGGAGTGGCCCGAGACTTTGACGTTGACGCAGTTGCAGGCCAACTG
GGCACCTGTGTGGGGGGACCGACGCCAAGAAGTGGTGCTTATTGGCGTGC
AAATGGACCAGGCGGCAGTAGAAAAGGCTTTGGACGCATGTCTACTGACG
GACAAGGAACTAGTGAGAATGCCTTGGGAGTGGGCCGAGACCTTTGTCGA
TCCTTTTTTCCCAAGTGGAACGGGGGAAGAAAGCGGACATGAGGACGATG
AGAGCAGCAGCGAGTATGAAAGTGATGAGGAAGAGGAGAACAATTAAGCA
CATTGATCTAGCTCTATGATATAAGAAAAGCATTGGGCATGAGGAGCTGG
ACTTGATTTTCTTGGCAAAGAAAATTGAGGAAAGTCACTTAATTTCTAAA
CCAGTTGCGAAAGGAAGTGCTAGAGTCGTAGAACAACAAAATATATTAGC
TTTAAAGGCCCCCGAGCCTCAAGCTCAC back to topprotein sequence of jgi.p|Nanoce1779_2|633717 >mRNA_9926-protein ID=mRNA_9926-protein|Name=jgi.p|Nanoce1779_2|633717|organism=Nannochloropsis oceanica|type=polypeptide|length=766bp
MNKVCQNAEHNYLDCPPYVVEYGLQVHQGVWYVASTKPRSHESFLEAASR
ALEEATGEDGGKEEVDCGGEDDDTVCVARPSPQSFQLAAHLPRITELHRP
AEAADGNTHAYHFFIATTEVGSCETEEDRDSKGDSGSSDNSSVFSNTTIA
LNATSTTAPSAGRAIVWKTREQVRACRSTKQGLHAFPLVDQTRNLLETAL
RTGGGVLSGPGWDELHEYLTSDNHKGGHSHNHVQTNASVEALLHQASLIK
RPDILPVTLLSGFLGAGKTTLLKHILNNQQNWRVAVLVNDMNELNIDAAL
VSQDRQRVQVVGKVQEEERIVSMANGCICCTLREDLLAQIVDLAQEEEFD
YLLIESSGISEPLAVAETFTFEDEHGRSLSSLARLDTTVTVVDAPDLHRH
LRARERVAASKEREVCPISMGEEDDKTLADLMCEQIEFADVVILNKIDLL
PAVGAVDSPVTVSSTGSFSKTPITSLSALRALIHTLNPGAKVLSAEHGRV
DVREILNTGLFSLEKAQQAPGWLRGLRGGSNSSMAPRVPETLEYGVSSFC
YRRSRPFHPERLHSLIFGAEGCECSDGDKVSSEGCLISHVGRDISGDRKA
EPWPLLQGTGVHQSSGSAQLHPLQSLVRVKGYLWLATQMQQMVFWSLAGA
VHSFTSRDYDRWLCATDPVEWPETLTLTQLQANWAPVWGDRRQEVVLIGV
QMDQAAVEKALDACLLTDKELVRMPWEWAETFVDPFFPSGTGEESGHEDD
ESSSEYESDEEEENN* back to topmRNA from alignment at scaffold_41:116732..119762- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_9926 ID=mRNA_9926|Name=jgi.p|Nanoce1779_2|633717|organism=Nannochloropsis oceanica|type=mRNA|length=3031bp|location=Sequence derived from alignment at scaffold_41:116732..119762- (Nannochloropsis oceanica)
GGAATTCAATACCAGGATATTGTGGTAAAAGTTCTCGAGACGCCCCAGCC
CTCCTTTTCTTCTTCGTCGTCGTCGTCGTCATCCTCCCTCTTCCTCCGCG
TCCTTGTCGGGTAAGTGCGTGGGGGAATGAAACGGAAATTCTACATGCAG
CAACACGTCCTGTACCAAGTAACTCTAGTCTTTCATTTGTGTCTTTACTC
CCACTCAAGAAAGCATGCTCAATTCCCTCGCCCTCCCTCACCGTACCGTA
CTCCCCCTCACAGCGACGAGAGTGCTGTCGCCGAGCTCGTCTACCGCTCC
ACCCGCAGCACCCACATCCGACGCGGTCGCTTCCTCCTGCTTTCAGGTTT
TGTCAATTGCTTCGATGGCATTATCCAACTGCATTGTGGACCGCGGACCC
AAGACCTCCAGCCACTGCACAAGCACGGGGGGGCCTCTTTTATCGTGCCA
GCCTCGGCCCGGGCCAATAACCTGTCGGCCATCGTGCATCATGTGGGAGC
TATTCTCGTCCGCCCCGTCCCTGTCCAAAGGCCTTCCAAGGGATTATTGA
ACATGAATAAAGTATGCCAGAATGCTGAGCATAACTATTTGGACTGTCCT
CCCTATGTTGTGGAGTACGGTCTTCAAGTCCACCAGGGCGTCTGGTACGT
CGCTAGCACCAAACCCCGATCACACGAATCTTTTCTTGAGGCAGCCTCCC
GAGCGCTAGAGGAAGCGACTGGAGAAGATGGGGGTAAGGAAGAGGTGGAC
TGCGGGGGCGAGGACGACGACACGGTCTGCGTGGCCCGTCCTTCTCCTCA
ATCTTTCCAACTGGCTGCGCATCTGCCCCGAATCACAGAGCTTCACCGTC
CAGCAGAAGCAGCCGACGGCAATACACATGCGTACCATTTTTTTATCGCC
ACGACGGAGGTCGGCAGTTGTGAGACTGAGGAGGATCGTGACAGCAAGGG
CGACAGTGGCAGCAGCGACAACAGCAGCGTGTTCTCCAACACTACAATTG
CGCTCAATGCCACCTCCACCACTGCCCCCAGCGCTGGCCGCGCTATCGTC
TGGAAAACACGGGAGCAAGTACGGGCCTGCCGTTCGACGAAACAAGGCCT
CCATGCCTTTCCCCTTGTCGACCAGACACGCAACCTCCTCGAAACGGCCT
TGCGTACGGGTGGTGGCGTGCTAAGTGGACCGGGGTGGGACGAGTTGCAT
GAGTACCTGACGAGCGACAATCATAAAGGTGGCCACTCCCACAACCATGT
TCAGACCAACGCATCGGTTGAAGCTCTCTTACATCAAGCTTCTTTGATCA
AGCGCCCGGACATCTTGCCCGTGACTTTGTTGAGTGGATTCTTGGGTGCC
GGAAAAACGACTCTTCTGAAGCATATCCTAAACAATCAGCAGAATTGGCG
AGTGGCGGTGCTGGTCAATGACATGAATGAGCTCAATATTGATGCCGCAC
TTGTGTCGCAAGACCGACAGCGTGTACAGGTGGTAGGCAAAGTCCAAGAG
GAGGAACGTATCGTGTCCATGGCGAACGGCTGCATTTGTTGCACGCTACG
GGAGGATCTGCTCGCTCAAATTGTGGATTTGGCGCAGGAGGAGGAATTCG
ACTATTTGTTGATTGAGAGTAGTGGAATTTCGGAGCCTCTGGCTGTGGCT
GAAACTTTCACCTTTGAGGATGAGCACGGCCGGTCCTTGTCGTCGCTGGC
GCGTTTGGACACGACTGTGACTGTGGTGGATGCGCCAGACCTTCACCGAC
ACTTGAGAGCGCGGGAGCGGGTAGCGGCGAGCAAAGAACGCGAGGTGTGT
CCTATTTCAATGGGTGAAGAGGACGACAAGACGCTTGCTGACTTAATGTG
TGAGCAGATCGAATTTGCGGATGTGGTGATCCTGAACAAGATCGATCTGT
TGCCTGCTGTCGGTGCCGTTGATAGCCCCGTGACTGTCTCGTCGACTGGA
TCATTCTCTAAGACCCCTATTACGTCCCTTTCTGCCCTTCGAGCTCTCAT
TCACACGCTCAACCCGGGGGCCAAGGTATTGTCAGCTGAACACGGACGCG
TGGACGTTCGTGAGATCCTCAATACAGGGCTCTTCTCGCTCGAGAAGGCG
CAGCAAGCTCCGGGTTGGTTGCGAGGATTGCGCGGTGGCAGCAACAGTTC
CATGGCTCCCCGTGTGCCTGAGACATTGGAGTACGGTGTCTCGAGCTTTT
GCTACCGCCGGAGCCGCCCTTTCCACCCTGAACGGCTGCATTCCTTGATT
TTTGGGGCCGAAGGGTGTGAATGCAGCGATGGTGATAAGGTTTCGAGTGA
GGGTTGTCTGATATCCCATGTCGGTCGCGATATCTCAGGGGATCGTAAGG
CTGAGCCGTGGCCCCTGCTGCAAGGGACTGGCGTCCACCAGTCAAGCGGC
TCTGCACAGCTCCACCCCCTCCAATCCCTTGTGCGCGTCAAGGGCTACCT
GTGGCTAGCAACACAGATGCAGCAAATGGTCTTCTGGTCCCTGGCAGGGG
CTGTGCACAGTTTCACCTCGCGAGATTATGACCGCTGGCTGTGTGCCACG
GACCCAGTGGAGTGGCCCGAGACTTTGACGTTGACGCAGTTGCAGGCCAA
CTGGGCACCTGTGTGGGGGGACCGACGCCAAGAAGTGGTGCTTATTGGCG
TGCAAATGGACCAGGCGGCAGTAGAAAAGGCTTTGGACGCATGTCTACTG
ACGGACAAGGAACTAGTGAGAATGCCTTGGGAGTGGGCCGAGACCTTTGT
CGATCCTTTTTTCCCAAGTGGAACGGGGGAAGAAAGCGGACATGAGGACG
ATGAGAGCAGCAGCGAGTATGAAAGTGATGAGGAAGAGGAGAACAATTAA
GCACATTGATCTAGCTCTATGATATAAGAAAAGCATTGGGCATGAGGAGC
TGGACTTGATTTTCTTGGCAAAGAAAATTGAGGAAAGTCACTTAATTTCT
AAACCAGTTGCGAAAGGAAGTGCTAGAGTCGTAGAACAACAAAATATATT
AGCTTTAAAGGCCCCCGAGCCTCAAGCTCAC back to topCoding sequence (CDS) from alignment at scaffold_41:116732..119762- >mRNA_9926 ID=mRNA_9926|Name=jgi.p|Nanoce1779_2|633717|organism=Nannochloropsis oceanica|type=CDS|length=2298bp|location=Sequence derived from alignment at scaffold_41:116732..119762- (Nannochloropsis oceanica)
ATGAATAAAGTATGCCAGAATGCTGAGCATAACTATTTGGACTGTCCTCC
CTATGTTGTGGAGTACGGTCTTCAAGTCCACCAGGGCGTCTGGTACGTCG
CTAGCACCAAACCCCGATCACACGAATCTTTTCTTGAGGCAGCCTCCCGA
GCGCTAGAGGAAGCGACTGGAGAAGATGGGGGTAAGGAAGAGGTGGACTG
CGGGGGCGAGGACGACGACACGGTCTGCGTGGCCCGTCCTTCTCCTCAAT
CTTTCCAACTGGCTGCGCATCTGCCCCGAATCACAGAGCTTCACCGTCCA
GCAGAAGCAGCCGACGGCAATACACATGCGTACCATTTTTTTATCGCCAC
GACGGAGGTCGGCAGTTGTGAGACTGAGGAGGATCGTGACAGCAAGGGCG
ACAGTGGCAGCAGCGACAACAGCAGCGTGTTCTCCAACACTACAATTGCG
CTCAATGCCACCTCCACCACTGCCCCCAGCGCTGGCCGCGCTATCGTCTG
GAAAACACGGGAGCAAGTACGGGCCTGCCGTTCGACGAAACAAGGCCTCC
ATGCCTTTCCCCTTGTCGACCAGACACGCAACCTCCTCGAAACGGCCTTG
CGTACGGGTGGTGGCGTGCTAAGTGGACCGGGGTGGGACGAGTTGCATGA
GTACCTGACGAGCGACAATCATAAAGGTGGCCACTCCCACAACCATGTTC
AGACCAACGCATCGGTTGAAGCTCTCTTACATCAAGCTTCTTTGATCAAG
CGCCCGGACATCTTGCCCGTGACTTTGTTGAGTGGATTCTTGGGTGCCGG
AAAAACGACTCTTCTGAAGCATATCCTAAACAATCAGCAGAATTGGCGAG
TGGCGGTGCTGGTCAATGACATGAATGAGCTCAATATTGATGCCGCACTT
GTGTCGCAAGACCGACAGCGTGTACAGGTGGTAGGCAAAGTCCAAGAGGA
GGAACGTATCGTGTCCATGGCGAACGGCTGCATTTGTTGCACGCTACGGG
AGGATCTGCTCGCTCAAATTGTGGATTTGGCGCAGGAGGAGGAATTCGAC
TATTTGTTGATTGAGAGTAGTGGAATTTCGGAGCCTCTGGCTGTGGCTGA
AACTTTCACCTTTGAGGATGAGCACGGCCGGTCCTTGTCGTCGCTGGCGC
GTTTGGACACGACTGTGACTGTGGTGGATGCGCCAGACCTTCACCGACAC
TTGAGAGCGCGGGAGCGGGTAGCGGCGAGCAAAGAACGCGAGGTGTGTCC
TATTTCAATGGGTGAAGAGGACGACAAGACGCTTGCTGACTTAATGTGTG
AGCAGATCGAATTTGCGGATGTGGTGATCCTGAACAAGATCGATCTGTTG
CCTGCTGTCGGTGCCGTTGATAGCCCCGTGACTGTCTCGTCGACTGGATC
ATTCTCTAAGACCCCTATTACGTCCCTTTCTGCCCTTCGAGCTCTCATTC
ACACGCTCAACCCGGGGGCCAAGGTATTGTCAGCTGAACACGGACGCGTG
GACGTTCGTGAGATCCTCAATACAGGGCTCTTCTCGCTCGAGAAGGCGCA
GCAAGCTCCGGGTTGGTTGCGAGGATTGCGCGGTGGCAGCAACAGTTCCA
TGGCTCCCCGTGTGCCTGAGACATTGGAGTACGGTGTCTCGAGCTTTTGC
TACCGCCGGAGCCGCCCTTTCCACCCTGAACGGCTGCATTCCTTGATTTT
TGGGGCCGAAGGGTGTGAATGCAGCGATGGTGATAAGGTTTCGAGTGAGG
GTTGTCTGATATCCCATGTCGGTCGCGATATCTCAGGGGATCGTAAGGCT
GAGCCGTGGCCCCTGCTGCAAGGGACTGGCGTCCACCAGTCAAGCGGCTC
TGCACAGCTCCACCCCCTCCAATCCCTTGTGCGCGTCAAGGGCTACCTGT
GGCTAGCAACACAGATGCAGCAAATGGTCTTCTGGTCCCTGGCAGGGGCT
GTGCACAGTTTCACCTCGCGAGATTATGACCGCTGGCTGTGTGCCACGGA
CCCAGTGGAGTGGCCCGAGACTTTGACGTTGACGCAGTTGCAGGCCAACT
GGGCACCTGTGTGGGGGGACCGACGCCAAGAAGTGGTGCTTATTGGCGTG
CAAATGGACCAGGCGGCAGTAGAAAAGGCTTTGGACGCATGTCTACTGAC
GGACAAGGAACTAGTGAGAATGCCTTGGGAGTGGGCCGAGACCTTTGTCG
ATCCTTTTTTCCCAAGTGGAACGGGGGAAGAAAGCGGACATGAGGACGAT
GAGAGCAGCAGCGAGTATGAAAGTGATGAGGAAGAGGAGAACAATTAA back to top
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