jgi.p|Nanoce1779_2|633716, mRNA_9925 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|633716
Unique Name	mRNA_9925
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	889
Alignment location	scaffold_41:110348..112984 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	633802
Track	FilteredModels2
ProteinId	633716

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_41	supercontig	scaffold_41:110348..112984 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|633716	gene_9925	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|633716	mRNA_9925-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9925	CDS_9925	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_41:110348..112984+
coding sequence from alignment at scaffold_41:110348..112984+

mRNA sequence

>mRNA_9925 ID=mRNA_9925|Name=jgi.p|Nanoce1779_2|633716|organism=Nannochloropsis oceanica|type=mRNA|length=889bp
GGCAAGGTCTTGACCGTGACCTAAGTACTCAATTATTGCTGTGTCGAGGG
AGGGAGTGTGAGGGAGGAAGGGGTCAGCATGGGGAGAGGGAAGGGAGGGA
GATTCCCCCCCCTGGGGATTGAGTATATGTCGGGCTCGCGCCGCTCATGG
GCATGGCGTGGCTGCAGTTATTAATGTCGAGGGCATGGGGTGGCTTTTTC
CCGTCTCTTTCCCTCTATGGGTGTGGCATGAATGTGGCAAGCAAGCAATC
ACACGACTACCACCACCACCACCACCATTACGATACGCCATGGGCAAGGC
CAAGAAAACACGCAAGTACGCCGTAATGAAGAAGCAGATCTCACCCAAAG
ACCCCCGGCTCAAGGACAACATCGAGAAGGCCAAGAAGCGGGCCGAGGCG
GTCGCAAAATCACTTACGCGTGAAGTCGAGGCCGTCCCAACGGGCATGTT
TTTTCAGTACAACACTTCTCTCGGCCCCCCTTTCCGTGTCTTGGTTGATA
CCAATTTCATAAATTTCTCGATTAAGAACAAGCTCGAAGTATACAAAGCC
ATGATGGACTGCCTTCTCGCCAAGTGCATTCCCTGTATTTCGGACTGTGT
CATGGCCGAACTGGAGAAGTTGGGATCCAAATACACCCTGGCCTTAAGAC
TTGCCAAAGACCCTCGTTTCGAGCGTCTTCCATGCTCCCATTCAGGGACG
TACGCCGATGACTGCATCGTGGAGAGAGTGACGCAGCACCGTTGCTTCAT
CGTCGCGACCTGTGACAAGGACCTCAAGCGACGCCTGCGGAAGATACCTG
GAGTTCCCATCATGTACGTAGCGAATCGCAAGTACAGCATTGAGCGGATG
CCTGAAGCGTTTGGCGCCCCCCGATTGTAGGGAGGGCGG

protein sequence of jgi.p|Nanoce1779_2|633716

>mRNA_9925-protein ID=mRNA_9925-protein|Name=jgi.p|Nanoce1779_2|633716|organism=Nannochloropsis oceanica|type=polypeptide|length=232bp
MGWLFPVSFPLWVWHECGKQAITRLPPPPPPLRYAMGKAKKTRKYAVMKK
QISPKDPRLKDNIEKAKKRAEAVAKSLTREVEAVPTGMFFQYNTSLGPPF
RVLVDTNFINFSIKNKLEVYKAMMDCLLAKCIPCISDCVMAELEKLGSKY
TLALRLAKDPRFERLPCSHSGTYADDCIVERVTQHRCFIVATCDKDLKRR
LRKIPGVPIMYVANRKYSIERMPEAFGAPRL*

mRNA from alignment at scaffold_41:110348..112984+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9925 ID=mRNA_9925|Name=jgi.p|Nanoce1779_2|633716|organism=Nannochloropsis oceanica|type=mRNA|length=2637bp|location=Sequence derived from alignment at scaffold_41:110348..112984+ (Nannochloropsis oceanica)
GGCAAGGTCTTGACCGTGACCTAAGTACTCAATTATTGCTGTGTCGAGGG
AGGGAGTGTGAGGGAGGAAGGGGTCAGCATGGGGAGAGGGAAGGGAGGGA
GATTCCCCCCCCTGGGGATTGAGTATATGTCGGGCTCGCGCCGCTCATGG
GCATGGCGTGGCTGCAGTTATTAATGTCGAGGGCATGGGGTGGCTTTTTC
CCGTCTCTTTCCCTCTATGGGTGTGGCATGAATGTGGCAAGCAAGCAATG
TAGGTCGTGACGGTTTCCCAAAGGGCCATATGGAGTTGCATGTGCAAGCT
GAGTGCACCCCTTCGTTAGGTGATGACCCGAATTACCACGATTCGCTTGC
TGCTCTGCTGCTGCTGCAAATGCTGCTCATTATGGTGGTGATGACACTGA
TGAGGATGAGAGTCGTGGCAAAGCTGCCACAGGGTGAGTGGCACGGCAGG
AACGCAGGCAGGACCCCAGTAAGCGGGGATTCAAGCAGAAGGGAATGTGT
CACGCATGTGCAGGTGCTGCTTCTCGGTTGCTGTGTTCGTGTTTTGACTT
GCCAGGGGCGGAGGAGAGGGAGTGGAAAGTCAAGCCTCCCACCCAAGGCA
ACTTTACAGCCAGAGACGCACTCATGCCACATACATACACGTGGAATGTC
TCAAGTGCCATCAAGCCGTCAAGTCTAGACTAGGAATAAACTCATCGAGA
GCGCGAGCGAGCGAGCAGGAGCAAGATCAGACTTGGAGATCCAAAAAAGT
CCTAGAAAGTATGACCAGAGAGGCGTATTCCAATGTGCCACCTGCCCATG
TCTTAGCCTCCTCTCCGCCTCGCTTCGTTCGTACAGCAAGCATACTAGGA
TAGTGATCATTGCCGTACAAACACAGGAGTTGTTGCACACCCGTGCGCAT
GACTGGGCCTTCACACACTGTTACCCTGGAGGATATCGTAGCAACTGCCC
GTGTCGACAACACCGCGCAAGCAACTAATGGACAACCCTCACCCTGCCTC
CCCGTCTCCCTCCACAGCACACGACTACCACCACCACCACCACCATTACG
ATACGCCATGGGCAAGGCCAAGAAAACACGCAAGTACGCCGTAATGAAGA
AGCAGATCTCACCCAAAGACCCCCGGCTGTACGTACCAAGGAGGGAGGGG
AGGAGGGGAAGAGAGAGGGGTGGGGAGGTCAAGTCCTGGGTTCATACCTC
TTCTTCGTCAATCAATCAATCAGTCGATCAGATCCCTTGTGTACGTTAAT
AGTCTAGGATCATTTGGATAGATGTTAAATTTGAGGACTGCGACAAAAGG
AAGCAGAGCATGATCCAATTGTGGCTCTTCTTGTCGTTTAACAGCCTCCC
CCTCCCGTCCCCCTCCCCCACTATCCTCTCCTCGCCTCCTCAGCAAGGAC
AACATCGAGAAGGCCAAGAAGCGGGCCGAGGCGGTCGCAAAATCACTTAC
GCGTGAAGTGTAAGTACCACCGATCGAAGGATAGAGGGATGGTAGGAGAT
ACGCTGCGTAGAGTCAGATACTCATCTCCCTCCCTCCCTCCCTTTCCCCC
CTCTTCCTCAGCGAGGCCGTCCCAACGGGCATGTTTTTTCAGTACAACAC
TTCTCTCGGCCCCCCTTTCCGTGTCTTGGTTGATACCAATTTCATAAATT
TCTCGATTAAGAACAAGCTCGAAGTATACAAAGCCATGATGGACTGCCTT
CTCGCCAAGTGCATTCCCTGTAAGTGCCCTCCCTCCCTCCCTCTCTCCCT
CCCTTCCTCTCTGCCTCCTTCCCTCGTTCCCTCCTCCTCAAGGTTGTTCA
CGCGCGTCGTGATGAGCTTGTGAACCTACCCCTCATCCTGTCTATTTCTC
TATACTCCACATCACTCATCCCTTCCCTCCCTGACATCCACACTATACTT
ATCTTTTCCTCTTTCCCTCCCTCCCCCCCCTTCTCTCTAAGGTATTTCGG
ACTGTGTCATGGCCGAACTGGAGAAGTTGGGATCCAAATACACCCTGGCC
TTGAGGTAGGGAGGGATGAAGGGAAGGCAGGAGGGAGGGAGGGGGAGAGG
ACGGAGAAAACCTCACTCATTCCTGATCCCTCCAACATTGACCGACACAC
TTCTCCATTCCTCCTTCCCGTCCCCCTCCTCCCTTCCTCCCTCCTTCCTT
AAGACTTGCCAAAGACCCTCGTTTCGAGCGTCTTCCATGCTCCCATTCAG
GGACGTACGCCGATGACTGCATCGTGGAGAGAGTGACGCAGGTACGGTTC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCGTTCCTACTTTTCGCCTC
AACCTATCTCCTTTCCTAAAGCTTGTGGGCATGCGGGGAAGCGTCCAAAA
AGTAACGAGAAGAAAATCTTATCCCAAATCCTCTCTCCCTCCCTTCCTCC
CTCCCTCCCTCCACATTCTCATACCTCTCTCCCTCTCTCTCTCCCTTCCT
CCCTTCCTCCTTCCCCCTCCCTGCCTCCCTGCAGCACCGTTGCTTCATCG
TCGCGACCTGTGACAAGGACCTCAAGCGACGCCTGCGGAAGATACCTGGA
GTTCCCATCATGTACGTAGCGAATCGCAAGTACAGCATTGAGCGGATGCC
TGAAGCGTTTGGCGCCCCCCGATTGTAGGGAGGGCGG

Coding sequence (CDS) from alignment at scaffold_41:110348..112984+

>mRNA_9925 ID=mRNA_9925|Name=jgi.p|Nanoce1779_2|633716|organism=Nannochloropsis oceanica|type=CDS|length=4872bp|location=Sequence derived from alignment at scaffold_41:110348..112984+ (Nannochloropsis oceanica)
ATGGGGTGGCTTTTTCCCGTCTCTTTCCCTCTATGGGTGTGGCATGAATG
TGGCAAGCAAGCAATCACACGACTACCACCACCACCACCACCATTACGAT
ACGCCATGGGCAAGGCCAAGAAAACACGCAAGTACGCCGTAATGAAGAAG
CAGATCTCACCCAAAGACCCCCGGCTCAAGGACAACATCGAGAAGGCCAA
GAAGCGGGCCGAGGCGGTCGCAAAATCACTTACGCGTGAAGTCGAGGCCG
TCCCAACGGGCATGTTTTTTCAGTACAACACTTCTCTCGGCCCCCCTTTC
CGTGTCTTGGTTGATACCAATTTCATAAATTTCTCGATTAAGAACAAGCT
CGAAGTATACAAAGCCATGATGGACTGCCTTCTCGCCAAGTGCATTCCCT
GTATTTCGGACTGTGTCATGGCCGAACTGGAGAAGTTGGGATCCAAATAC
ACCCTGGCCTTAAGACTTGCCAAAGACCCTCGTTTCGAGCGTCTTCCATG
CTCCCATTCAGGGACGTACGCCGATGACTGCATCGTGGAGAGAGTGACGC
AGCACCGTTGCTTCATCGTCGCGACCTGTGACAAGGACCTCAAGCGACGC
CTGCGGAAGATACCTGGAGTTCCCATCATGTACGTAGCGAATCGCAAGTA
CAGCATTGAGCGGATGCCTGAAGCGTTTGGCGCCCCCCGATTGTAGATGG
GGTGGCTTTTTCCCGTCTCTTTCCCTCTATGGGTGTGGCATGAATGTGGC
AAGCAAGCAATCACACGACTACCACCACCACCACCACCATTACGATACGC
CATGGGCAAGGCCAAGAAAACACGCAAGTACGCCGTAATGAAGAAGCAGA
TCTCACCCAAAGACCCCCGGCTCAAGGACAACATCGAGAAGGCCAAGAAG
CGGGCCGAGGCGGTCGCAAAATCACTTACGCGTGAAGTCGAGGCCGTCCC
AACGGGCATGTTTTTTCAGTACAACACTTCTCTCGGCCCCCCTTTCCGTG
TCTTGGTTGATACCAATTTCATAAATTTCTCGATTAAGAACAAGCTCGAA
GTATACAAAGCCATGATGGACTGCCTTCTCGCCAAGTGCATTCCCTGTAT
TTCGGACTGTGTCATGGCCGAACTGGAGAAGTTGGGATCCAAATACACCC
TGGCCTTAAGACTTGCCAAAGACCCTCGTTTCGAGCGTCTTCCATGCTCC
CATTCAGGGACGTACGCCGATGACTGCATCGTGGAGAGAGTGACGCAGCA
CCGTTGCTTCATCGTCGCGACCTGTGACAAGGACCTCAAGCGACGCCTGC
GGAAGATACCTGGAGTTCCCATCATGTACGTAGCGAATCGCAAGTACAGC
ATTGAGCGGATGCCTGAAGCGTTTGGCGCCCCCCGATTGTAGATGGGGTG
GCTTTTTCCCGTCTCTTTCCCTCTATGGGTGTGGCATGAATGTGGCAAGC
AAGCAATCACACGACTACCACCACCACCACCACCATTACGATACGCCATG
GGCAAGGCCAAGAAAACACGCAAGTACGCCGTAATGAAGAAGCAGATCTC
ACCCAAAGACCCCCGGCTCAAGGACAACATCGAGAAGGCCAAGAAGCGGG
CCGAGGCGGTCGCAAAATCACTTACGCGTGAAGTCGAGGCCGTCCCAACG
GGCATGTTTTTTCAGTACAACACTTCTCTCGGCCCCCCTTTCCGTGTCTT
GGTTGATACCAATTTCATAAATTTCTCGATTAAGAACAAGCTCGAAGTAT
ACAAAGCCATGATGGACTGCCTTCTCGCCAAGTGCATTCCCTGTATTTCG
GACTGTGTCATGGCCGAACTGGAGAAGTTGGGATCCAAATACACCCTGGC
CTTAAGACTTGCCAAAGACCCTCGTTTCGAGCGTCTTCCATGCTCCCATT
CAGGGACGTACGCCGATGACTGCATCGTGGAGAGAGTGACGCAGCACCGT
TGCTTCATCGTCGCGACCTGTGACAAGGACCTCAAGCGACGCCTGCGGAA
GATACCTGGAGTTCCCATCATGTACGTAGCGAATCGCAAGTACAGCATTG
AGCGGATGCCTGAAGCGTTTGGCGCCCCCCGATTGTAGATGGGGTGGCTT
TTTCCCGTCTCTTTCCCTCTATGGGTGTGGCATGAATGTGGCAAGCAAGC
AATCACACGACTACCACCACCACCACCACCATTACGATACGCCATGGGCA
AGGCCAAGAAAACACGCAAGTACGCCGTAATGAAGAAGCAGATCTCACCC
AAAGACCCCCGGCTCAAGGACAACATCGAGAAGGCCAAGAAGCGGGCCGA
GGCGGTCGCAAAATCACTTACGCGTGAAGTCGAGGCCGTCCCAACGGGCA
TGTTTTTTCAGTACAACACTTCTCTCGGCCCCCCTTTCCGTGTCTTGGTT
GATACCAATTTCATAAATTTCTCGATTAAGAACAAGCTCGAAGTATACAA
AGCCATGATGGACTGCCTTCTCGCCAAGTGCATTCCCTGTATTTCGGACT
GTGTCATGGCCGAACTGGAGAAGTTGGGATCCAAATACACCCTGGCCTTA
AGACTTGCCAAAGACCCTCGTTTCGAGCGTCTTCCATGCTCCCATTCAGG
GACGTACGCCGATGACTGCATCGTGGAGAGAGTGACGCAGCACCGTTGCT
TCATCGTCGCGACCTGTGACAAGGACCTCAAGCGACGCCTGCGGAAGATA
CCTGGAGTTCCCATCATGTACGTAGCGAATCGCAAGTACAGCATTGAGCG
GATGCCTGAAGCGTTTGGCGCCCCCCGATTGTAGATGGGGTGGCTTTTTC
CCGTCTCTTTCCCTCTATGGGTGTGGCATGAATGTGGCAAGCAAGCAATC
ACACGACTACCACCACCACCACCACCATTACGATACGCCATGGGCAAGGC
CAAGAAAACACGCAAGTACGCCGTAATGAAGAAGCAGATCTCACCCAAAG
ACCCCCGGCTCAAGGACAACATCGAGAAGGCCAAGAAGCGGGCCGAGGCG
GTCGCAAAATCACTTACGCGTGAAGTCGAGGCCGTCCCAACGGGCATGTT
TTTTCAGTACAACACTTCTCTCGGCCCCCCTTTCCGTGTCTTGGTTGATA
CCAATTTCATAAATTTCTCGATTAAGAACAAGCTCGAAGTATACAAAGCC
ATGATGGACTGCCTTCTCGCCAAGTGCATTCCCTGTATTTCGGACTGTGT
CATGGCCGAACTGGAGAAGTTGGGATCCAAATACACCCTGGCCTTAAGAC
TTGCCAAAGACCCTCGTTTCGAGCGTCTTCCATGCTCCCATTCAGGGACG
TACGCCGATGACTGCATCGTGGAGAGAGTGACGCAGCACCGTTGCTTCAT
CGTCGCGACCTGTGACAAGGACCTCAAGCGACGCCTGCGGAAGATACCTG
GAGTTCCCATCATGTACGTAGCGAATCGCAAGTACAGCATTGAGCGGATG
CCTGAAGCGTTTGGCGCCCCCCGATTGTAGATGGGGTGGCTTTTTCCCGT
CTCTTTCCCTCTATGGGTGTGGCATGAATGTGGCAAGCAAGCAATCACAC
GACTACCACCACCACCACCACCATTACGATACGCCATGGGCAAGGCCAAG
AAAACACGCAAGTACGCCGTAATGAAGAAGCAGATCTCACCCAAAGACCC
CCGGCTCAAGGACAACATCGAGAAGGCCAAGAAGCGGGCCGAGGCGGTCG
CAAAATCACTTACGCGTGAAGTCGAGGCCGTCCCAACGGGCATGTTTTTT
CAGTACAACACTTCTCTCGGCCCCCCTTTCCGTGTCTTGGTTGATACCAA
TTTCATAAATTTCTCGATTAAGAACAAGCTCGAAGTATACAAAGCCATGA
TGGACTGCCTTCTCGCCAAGTGCATTCCCTGTATTTCGGACTGTGTCATG
GCCGAACTGGAGAAGTTGGGATCCAAATACACCCTGGCCTTAAGACTTGC
CAAAGACCCTCGTTTCGAGCGTCTTCCATGCTCCCATTCAGGGACGTACG
CCGATGACTGCATCGTGGAGAGAGTGACGCAGCACCGTTGCTTCATCGTC
GCGACCTGTGACAAGGACCTCAAGCGACGCCTGCGGAAGATACCTGGAGT
TCCCATCATGTACGTAGCGAATCGCAAGTACAGCATTGAGCGGATGCCTG
AAGCGTTTGGCGCCCCCCGATTGTAGATGGGGTGGCTTTTTCCCGTCTCT
TTCCCTCTATGGGTGTGGCATGAATGTGGCAAGCAAGCAATCACACGACT
ACCACCACCACCACCACCATTACGATACGCCATGGGCAAGGCCAAGAAAA
CACGCAAGTACGCCGTAATGAAGAAGCAGATCTCACCCAAAGACCCCCGG
CTCAAGGACAACATCGAGAAGGCCAAGAAGCGGGCCGAGGCGGTCGCAAA
ATCACTTACGCGTGAAGTCGAGGCCGTCCCAACGGGCATGTTTTTTCAGT
ACAACACTTCTCTCGGCCCCCCTTTCCGTGTCTTGGTTGATACCAATTTC
ATAAATTTCTCGATTAAGAACAAGCTCGAAGTATACAAAGCCATGATGGA
CTGCCTTCTCGCCAAGTGCATTCCCTGTATTTCGGACTGTGTCATGGCCG
AACTGGAGAAGTTGGGATCCAAATACACCCTGGCCTTAAGACTTGCCAAA
GACCCTCGTTTCGAGCGTCTTCCATGCTCCCATTCAGGGACGTACGCCGA
TGACTGCATCGTGGAGAGAGTGACGCAGCACCGTTGCTTCATCGTCGCGA
CCTGTGACAAGGACCTCAAGCGACGCCTGCGGAAGATACCTGGAGTTCCC
ATCATGTACGTAGCGAATCGCAAGTACAGCATTGAGCGGATGCCTGAAGC
GTTTGGCGCCCCCCGATTGTAG

Synonyms

Publications