jgi.p|Nanoce1779_2|305329, mRNA_9921 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|305329
Unique NamemRNA_9921
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1016
Alignment locationscaffold_41:94086..95310 +

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Properties
Property NameValue
TranscriptId305415
TrackFilteredModels2
ProteinId305329
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_41supercontigscaffold_41:94086..95310 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|305329gene_9921Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|305329mRNA_9921-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9921CDS_9921Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9921 ID=mRNA_9921|Name=jgi.p|Nanoce1779_2|305329|organism=Nannochloropsis oceanica|type=mRNA|length=1016bp
TGTGGTTCTGAATAGCTTGTTGTAGGCTTGGAAACCGACCTCAAACACTC
ACTCGCCCCTTCCTCCCTCCCTCCCGTAACATGCACTGCTGCTTGCCTTG
CTGCTTGCTGCCGCCATCAACCACGACCACCACAAGGAAGCACGAGAGCA
TGTTGTGCAACTTGGCCACGAAAGCGGGAGCCGTGGCGTGGACACGGGGC
GCGCAATCCGGTCGAGGGAAGGGACGCGGGCTGCGGGGGGCGTCTCTCTC
GACAACCCACACGGGTACAGGCACGGGCAGTGAAGGGGGCTCCGATAAGA
CATTTGAAATGGTGAAAGTGTCGGTAGCTGTCTTGGGCTTGGTGGCGGCG
GTTGCTGGCTCTACAGCTGTGGCGGTCCATCATCTCGACCAGACGGAGAT
CAAGCGCATTCACGACAAGGCGGCGACGGACGTCGCTCAGGCCAAAGCAG
ACGTCGCGCGCGTCGAGGGCGAGCGAAGGTTGTCGGAGGAGCGTTTGAGG
GCGGAGGTGGAGCGGTACAAGTATGACCTGCGACTGACGCAAACGCAGGA
CTTCAAACCGTACCAGGCCGCCATTTTGGAGAACAAAATAAAGAGGGGAG
GAGCCGGCGGACCGCAGGACTAGCTTTTGGGACCCTGTGCAGATGTATAA
AAATATTCAAAAGACACATTCAAAGACATGTACAGTAGCCGGGGTTATGA
AGAAGAGGTGGGCATGAGGGGGTAGTAGGACTCATACACGACTAACGAGG
GCTCCACAAACATTTTAACCAGCGAATTCTTCCTTTCTCTACTTTATTTT
GATGTGATGCACTTGCTCGTTTTATCTCTTCCGCACTCACTCCGCCAACC
CCGCTTCCAACTTGTCCAACCAAGCCCCCGCCGCTTGTCAACGGAGTACT
GTACTCTACCGTGCACTGGAGGATATAGTTAAAGACCCTTGTGTTGTGAG
ACCTTTGGCGGTCGACGTGGGAGCTCGCTTAAAGACGGTAATACGTGCCT
TCCATCACTGGCAAGT
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protein sequence of jgi.p|Nanoce1779_2|305329

>mRNA_9921-protein ID=mRNA_9921-protein|Name=jgi.p|Nanoce1779_2|305329|organism=Nannochloropsis oceanica|type=polypeptide|length=181bp
MHCCLPCCLLPPSTTTTTRKHESMLCNLATKAGAVAWTRGAQSGRGKGRG
LRGASLSTTHTGTGTGSEGGSDKTFEMVKVSVAVLGLVAAVAGSTAVAVH
HLDQTEIKRIHDKAATDVAQAKADVARVEGERRLSEERLRAEVERYKYDL
RLTQTQDFKPYQAAILENKIKRGGAGGPQD*
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mRNA from alignment at scaffold_41:94086..95310+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9921 ID=mRNA_9921|Name=jgi.p|Nanoce1779_2|305329|organism=Nannochloropsis oceanica|type=mRNA|length=1225bp|location=Sequence derived from alignment at scaffold_41:94086..95310+ (Nannochloropsis oceanica)
TGTGGTTCTGAATAGCTTGTTGTAGGCTTGGAAACCGACCTCAAACACTC
ACTCGCCCCTTCCTCCCTCCCTCCCGTAACATGCACTGCTGCTTGCCTTG
CTGCTTGCTGCCGCCATCAACCACGACCACCACAAGGAAGCACGAGAGCA
TGTTGTGCAACTTGGCCACGAAAGCGGGAGCCGTGGCGTGGACACGGGGC
GCGCAATCCGGTCGAGGTAAGGTGGCTTGAGCTCATGCATATTGGGGAGG
GCTTTAGGGTGGTGGGGTGGGGAGGGACGTGCGGTGCACGCGGCCGCAAA
CTGCCGGCGGCATGTTGATTTATTCCCGTCTGTCTGTCTGTCATGTTTGA
ATCTCAATCCTTATTGTGCGGACAAGGAACCACACCAAGGTGTTCACGCA
CAAGCACATCCATACGCGCCAACAGGGAAGGGACGCGGGCTGCGGGGGGC
GTCTCTCTCGACAACCCACACGGGTACAGGCACGGGCAGTGAAGGGGGCT
CCGATAAGACATTTGAAATGGTGAAAGTGTCGGTAGCTGTCTTGGGCTTG
GTGGCGGCGGTTGCTGGCTCTACAGCTGTGGCGGTCCATCATCTCGACCA
GACGGAGATCAAGCGCATTCACGACAAGGCGGCGACGGACGTCGCTCAGG
CCAAAGCAGACGTCGCGCGCGTCGAGGGCGAGCGAAGGTTGTCGGAGGAG
CGTTTGAGGGCGGAGGTGGAGCGGTACAAGTATGACCTGCGACTGACGCA
AACGCAGGACTTCAAACCGTACCAGGCCGCCATTTTGGAGAACAAAATAA
AGAGGGGAGGAGCCGGCGGACCGCAGGACTAGCTTTTGGGACCCTGTGCA
GATGTATAAAAATATTCAAAAGACACATTCAAAGACATGTACAGTAGCCG
GGGTTATGAAGAAGAGGTGGGCATGAGGGGGTAGTAGGACTCATACACGA
CTAACGAGGGCTCCACAAACATTTTAACCAGCGAATTCTTCCTTTCTCTA
CTTTATTTTGATGTGATGCACTTGCTCGTTTTATCTCTTCCGCACTCACT
CCGCCAACCCCGCTTCCAACTTGTCCAACCAAGCCCCCGCCGCTTGTCAA
CGGAGTACTGTACTCTACCGTGCACTGGAGGATATAGTTAAAGACCCTTG
TGTTGTGAGACCTTTGGCGGTCGACGTGGGAGCTCGCTTAAAGACGGTAA
TACGTGCCTTCCATCACTGGCAAGT
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Coding sequence (CDS) from alignment at scaffold_41:94086..95310+

>mRNA_9921 ID=mRNA_9921|Name=jgi.p|Nanoce1779_2|305329|organism=Nannochloropsis oceanica|type=CDS|length=1086bp|location=Sequence derived from alignment at scaffold_41:94086..95310+ (Nannochloropsis oceanica)
ATGCACTGCTGCTTGCCTTGCTGCTTGCTGCCGCCATCAACCACGACCAC
CACAAGGAAGCACGAGAGCATGTTGTGCAACTTGGCCACGAAAGCGGGAG
CCGTGGCGTGGACACGGGGCGCGCAATCCGGTCGAGGGAAGGGACGCGGG
CTGCGGGGGGCGTCTCTCTCGACAACCCACACGGGTACAGGCACGGGCAG
TGAAGGGGGCTCCGATAAGACATTTGAAATGGTGAAAGTGTCGGTAGCTG
TCTTGGGCTTGGTGGCGGCGGTTGCTGGCTCTACAGCTGTGGCGGTCCAT
CATCTCGACCAGACGGAGATCAAGCGCATTCACGACAAGGCGGCGACGGA
CGTCGCTCAGGCCAAAGCAGACGTCGCGCGCGTCGAGGGCGAGCGAAGGT
TGTCGGAGGAGCGTTTGAGGGCGGAGGTGGAGCGGTACAAGTATGACCTG
CGACTGACGCAAACGCAGGACTTCAAACCGTACCAGGCCGCCATTTTGGA
GAACAAAATAAAGAGGGGAGGAGCCGGCGGACCGCAGGACTAGATGCACT
GCTGCTTGCCTTGCTGCTTGCTGCCGCCATCAACCACGACCACCACAAGG
AAGCACGAGAGCATGTTGTGCAACTTGGCCACGAAAGCGGGAGCCGTGGC
GTGGACACGGGGCGCGCAATCCGGTCGAGGGAAGGGACGCGGGCTGCGGG
GGGCGTCTCTCTCGACAACCCACACGGGTACAGGCACGGGCAGTGAAGGG
GGCTCCGATAAGACATTTGAAATGGTGAAAGTGTCGGTAGCTGTCTTGGG
CTTGGTGGCGGCGGTTGCTGGCTCTACAGCTGTGGCGGTCCATCATCTCG
ACCAGACGGAGATCAAGCGCATTCACGACAAGGCGGCGACGGACGTCGCT
CAGGCCAAAGCAGACGTCGCGCGCGTCGAGGGCGAGCGAAGGTTGTCGGA
GGAGCGTTTGAGGGCGGAGGTGGAGCGGTACAAGTATGACCTGCGACTGA
CGCAAACGCAGGACTTCAAACCGTACCAGGCCGCCATTTTGGAGAACAAA
ATAAAGAGGGGAGGAGCCGGCGGACCGCAGGACTAG
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Synonyms
Publications