jgi.p|Nanoce1779_2|574934, mRNA_992 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|574934
Unique NamemRNA_992
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1134
Alignment locationscaffold_2:956961..958094 -

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Properties
Property NameValue
TranscriptId575020
TrackFilteredModels2
ProteinId574934
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:956961..958094 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574934gene_992Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574934mRNA_992-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_992CDS_992Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_992 ID=mRNA_992|Name=jgi.p|Nanoce1779_2|574934|organism=Nannochloropsis oceanica|type=mRNA|length=1134bp
AAGGGGAGGAGGGAGGGGGGGAGGCGATGATCGAGGATCCAATCTTGATG
ATGTGCATCCCGGCTTCGCAAGCGTATACGGTGGCTTGTCGGTGCTCCCA
TGCTTTTAGCACGGAAACACTGTATGGGTGTATCAAGACTGCCTTGATCG
ACGACCTGATTCCTGCTTGTCCTCTCGCGAATCACCCCGAGCCCGCTCAA
CGGTGCAACCACCTGCTGGCACAAGAAGAAGTCGAACAGGTTCTGAATCG
CCATGCGCCCCCCTCTCAGCTGCCGTCGGAAGATCGGAGGCTGTGGCGGT
TTCGGCGGGGTCGGCTGGTGGACGGAGGGTTGGGTTGGGTTAGCGAGAAA
GTGACCGAGGCGTTTCTGAGGAAAGGGAAGATAGCGGCGGGCTGTATTGA
GTGTCCAAATGGTAGTTGTAGCTGCTGGGTTGAGCCCACAAGGCCCTTAG
AGAAGCAAAGGGTGGACTGCCCGAAGTGCTTAATGACGTTTTGTACCTTG
TGCAAGCGTCCATATCACTTTAGATGTTCCTGTGATGAAGTCATGACAAT
CACTAAGCAATGGTTGGAGTGGCAGCAGCACGGCCGGGAGCCATACCTCA
CCAAGATGGCAAAGGAAGATTCGAGCTACCAGGCAGCACTGGATGTATTC
AATGAACGGAGGGCTGCACACGTGCAGGAGGTGCACACGGCGGAGCAAAA
CTGGGGTTTGTTGGTCGCGGATGAGAACTACAAGGCGAGCCGATGTAGGA
GATGTCCGTACTGTAATCGCGTGATTGAACGGATTGATGGATGTGATACC
ATGGTGTGTGGTCAGAATGCGCATGGCGGGAACATTCAAAATGGGTGTGG
AGTGGCTTTTGATTGGAATGAGGCACTGTGTTATAGTGCTGACATAGGGG
AGAAAAGATCAATTGTTCCTTTTGAGGAGGTGCCGCCGTCCGAAATTGCG
CGGGTGGAGCACCAGATCATGGACGGGACGCCTGTGAAGTGTGATATTTG
CTCGGCCAAGATCACTGGGCCTTTAGCTATGTGTATCAATTGTCCATCGT
TTTCATGTTGTATTCGGTGTCAGAATAAGCATACGCGTGGACACGTGTTG
AGGCTTTACATGGACGGGGGGGGGGAAAGGTAGG
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protein sequence of jgi.p|Nanoce1779_2|574934

>mRNA_992-protein ID=mRNA_992-protein|Name=jgi.p|Nanoce1779_2|574934|organism=Nannochloropsis oceanica|type=polypeptide|length=369bp
MIEDPILMMCIPASQAYTVACRCSHAFSTETLYGCIKTALIDDLIPACPL
ANHPEPAQRCNHLLAQEEVEQVLNRHAPPSQLPSEDRRLWRFRRGRLVDG
GLGWVSEKVTEAFLRKGKIAAGCIECPNGSCSCWVEPTRPLEKQRVDCPK
CLMTFCTLCKRPYHFRCSCDEVMTITKQWLEWQQHGREPYLTKMAKEDSS
YQAALDVFNERRAAHVQEVHTAEQNWGLLVADENYKASRCRRCPYCNRVI
ERIDGCDTMVCGQNAHGGNIQNGCGVAFDWNEALCYSADIGEKRSIVPFE
EVPPSEIARVEHQIMDGTPVKCDICSAKITGPLAMCINCPSFSCCIRCQN
KHTRGHVLRLYMDGGGER*
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mRNA from alignment at scaffold_2:956961..958094-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_992 ID=mRNA_992|Name=jgi.p|Nanoce1779_2|574934|organism=Nannochloropsis oceanica|type=mRNA|length=1134bp|location=Sequence derived from alignment at scaffold_2:956961..958094- (Nannochloropsis oceanica)
AAGGGGAGGAGGGAGGGGGGGAGGCGATGATCGAGGATCCAATCTTGATG
ATGTGCATCCCGGCTTCGCAAGCGTATACGGTGGCTTGTCGGTGCTCCCA
TGCTTTTAGCACGGAAACACTGTATGGGTGTATCAAGACTGCCTTGATCG
ACGACCTGATTCCTGCTTGTCCTCTCGCGAATCACCCCGAGCCCGCTCAA
CGGTGCAACCACCTGCTGGCACAAGAAGAAGTCGAACAGGTTCTGAATCG
CCATGCGCCCCCCTCTCAGCTGCCGTCGGAAGATCGGAGGCTGTGGCGGT
TTCGGCGGGGTCGGCTGGTGGACGGAGGGTTGGGTTGGGTTAGCGAGAAA
GTGACCGAGGCGTTTCTGAGGAAAGGGAAGATAGCGGCGGGCTGTATTGA
GTGTCCAAATGGTAGTTGTAGCTGCTGGGTTGAGCCCACAAGGCCCTTAG
AGAAGCAAAGGGTGGACTGCCCGAAGTGCTTAATGACGTTTTGTACCTTG
TGCAAGCGTCCATATCACTTTAGATGTTCCTGTGATGAAGTCATGACAAT
CACTAAGCAATGGTTGGAGTGGCAGCAGCACGGCCGGGAGCCATACCTCA
CCAAGATGGCAAAGGAAGATTCGAGCTACCAGGCAGCACTGGATGTATTC
AATGAACGGAGGGCTGCACACGTGCAGGAGGTGCACACGGCGGAGCAAAA
CTGGGGTTTGTTGGTCGCGGATGAGAACTACAAGGCGAGCCGATGTAGGA
GATGTCCGTACTGTAATCGCGTGATTGAACGGATTGATGGATGTGATACC
ATGGTGTGTGGTCAGAATGCGCATGGCGGGAACATTCAAAATGGGTGTGG
AGTGGCTTTTGATTGGAATGAGGCACTGTGTTATAGTGCTGACATAGGGG
AGAAAAGATCAATTGTTCCTTTTGAGGAGGTGCCGCCGTCCGAAATTGCG
CGGGTGGAGCACCAGATCATGGACGGGACGCCTGTGAAGTGTGATATTTG
CTCGGCCAAGATCACTGGGCCTTTAGCTATGTGTATCAATTGTCCATCGT
TTTCATGTTGTATTCGGTGTCAGAATAAGCATACGCGTGGACACGTGTTG
AGGCTTTACATGGACGGGGGGGGGGAAAGGTAGG
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Coding sequence (CDS) from alignment at scaffold_2:956961..958094-

>mRNA_992 ID=mRNA_992|Name=jgi.p|Nanoce1779_2|574934|organism=Nannochloropsis oceanica|type=CDS|length=1107bp|location=Sequence derived from alignment at scaffold_2:956961..958094- (Nannochloropsis oceanica)
ATGATCGAGGATCCAATCTTGATGATGTGCATCCCGGCTTCGCAAGCGTA
TACGGTGGCTTGTCGGTGCTCCCATGCTTTTAGCACGGAAACACTGTATG
GGTGTATCAAGACTGCCTTGATCGACGACCTGATTCCTGCTTGTCCTCTC
GCGAATCACCCCGAGCCCGCTCAACGGTGCAACCACCTGCTGGCACAAGA
AGAAGTCGAACAGGTTCTGAATCGCCATGCGCCCCCCTCTCAGCTGCCGT
CGGAAGATCGGAGGCTGTGGCGGTTTCGGCGGGGTCGGCTGGTGGACGGA
GGGTTGGGTTGGGTTAGCGAGAAAGTGACCGAGGCGTTTCTGAGGAAAGG
GAAGATAGCGGCGGGCTGTATTGAGTGTCCAAATGGTAGTTGTAGCTGCT
GGGTTGAGCCCACAAGGCCCTTAGAGAAGCAAAGGGTGGACTGCCCGAAG
TGCTTAATGACGTTTTGTACCTTGTGCAAGCGTCCATATCACTTTAGATG
TTCCTGTGATGAAGTCATGACAATCACTAAGCAATGGTTGGAGTGGCAGC
AGCACGGCCGGGAGCCATACCTCACCAAGATGGCAAAGGAAGATTCGAGC
TACCAGGCAGCACTGGATGTATTCAATGAACGGAGGGCTGCACACGTGCA
GGAGGTGCACACGGCGGAGCAAAACTGGGGTTTGTTGGTCGCGGATGAGA
ACTACAAGGCGAGCCGATGTAGGAGATGTCCGTACTGTAATCGCGTGATT
GAACGGATTGATGGATGTGATACCATGGTGTGTGGTCAGAATGCGCATGG
CGGGAACATTCAAAATGGGTGTGGAGTGGCTTTTGATTGGAATGAGGCAC
TGTGTTATAGTGCTGACATAGGGGAGAAAAGATCAATTGTTCCTTTTGAG
GAGGTGCCGCCGTCCGAAATTGCGCGGGTGGAGCACCAGATCATGGACGG
GACGCCTGTGAAGTGTGATATTTGCTCGGCCAAGATCACTGGGCCTTTAG
CTATGTGTATCAATTGTCCATCGTTTTCATGTTGTATTCGGTGTCAGAAT
AAGCATACGCGTGGACACGTGTTGAGGCTTTACATGGACGGGGGGGGGGA
AAGGTAG
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Synonyms
Publications