jgi.p|Nanoce1779_2|305751, mRNA_9919 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|305751
Unique Name	mRNA_9919
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1159
Alignment location	scaffold_41:92175..93333 -

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Properties


Property Name	Value
TranscriptId	305837
Track	FilteredModels2
ProteinId	305751

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_41	supercontig	scaffold_41:92175..93333 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|305751	gene_9919	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|305751	mRNA_9919-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9919	CDS_9919	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_41:92175..93333-
coding sequence from alignment at scaffold_41:92175..93333-

mRNA sequence

>mRNA_9919 ID=mRNA_9919|Name=jgi.p|Nanoce1779_2|305751|organism=Nannochloropsis oceanica|type=mRNA|length=1159bp
CTACCCCCTCATGCCCACCTCTTCTTCATAACCCCGGCTACTGTACATGT
CTTTGAATGTGTCTTTTGAATATTTTTATACATCTGCACAGGGTCCCAAA
AGCTAGTCCTGCGGTCCGCCGGCTCCTCCCCTCTTTATTTTGTTCTCCAA
AATGGCGGCCTGGTACGGTTTGAAGTCCTGCGTTTGCGTCAGTCGCAGGT
CATACTTGTACCGCTCCACCTCCGCCCTCAAACGCTCCTCCGACAACCTT
CGCTCGCCCTCGACGCGCGCGACGTCTGCTTTGGCCTGAGCGACGTCCGT
CGCCGCCTTGTCGTGAATGCGCTTGATCTCCGTCTGGTCGAGATGATGGA
CCGCCACAGCTGTAGAGCCAGCAACCGCCGCCACCAAGCCCAAGACAGCT
ACCGACACTTTCACCATTTCAAATGTCTTATCGGAGCCCCCTTCACTGCC
CGTGCCTGTACCCGTGTGGGTTGTCGAGAGAGACGCCCCCCGCAGCCCGC
GTCCCTTCCCTGTTGGCGCGTATGGATGTGCTTGTGCGTGAACACCTTGG
TGTGGTTCCTTGTCCGCACAATAAGAATTGGGATTCAATATGGACTCGGC
GGTACCGGCTTTTCAAGTGGGGCAGCCGGTAGTGACTACATCACCTCTGT
CAATTTGCATGCTTACGTGGTGATCACCAGTGTCACGTGTGTTTACCGGC
CTGACACGATTGTTTCGACGTTCAGTAAGATCTATGGCGGCAGCGGCCGC
TTTGCGAAGTTCCCCGCCTCCAAGGTGGCCTCGGTAAAGCAAGACACGCT
TTTGATGACCGTCGCACCTGGTGCATCGAACCCTATCAATCCCTTCCAAT
TTCTTCCTCAGGAATGGGAAACCCAGCTGGAGGTGAACTACGTAAAGCCT
TACTTCCATTCCAGCATGCTCTAAGGACTATCGAATGTGGGGGAGGAGCT
CGCTTATTCTAGTGTTCCAACACTTCTTGAGATCCTTTTCCTGCAAAAAC
AGCATGAATCATCGTATGAAGATGTTTCACACCCACGATCCGACCAATGA
CAATGTTCCATGGCCATGAAGACTACGATAATGTTCTCGTCTGCTTTCTA
GTGTTCTGAATGTGTGTCTTTCCTTGGTTGAGCACTTCTTGTTTTGTGTG
CTTATATTC

protein sequence of jgi.p|Nanoce1779_2|305751

>mRNA_9919-protein ID=mRNA_9919-protein|Name=jgi.p|Nanoce1779_2|305751|organism=Nannochloropsis oceanica|type=polypeptide|length=194bp
MMDRHSCRASNRRHQAQDSYRHFHHFKCLIGAPFTARACTRVGCRERRPP
QPASLPCWRVWMCLCVNTLVWFLVRTIRIGIQYGLGGTGFSSGAAGSDYI
TSVNLHAYVVITSVTCVYRPDTIVSTFSKIYGGSGRFAKFPASKVASVKQ
DTLLMTVAPGASNPINPFQFLPQEWETQLEVNYVKPYFHSSML*

mRNA from alignment at scaffold_41:92175..93333-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9919 ID=mRNA_9919|Name=jgi.p|Nanoce1779_2|305751|organism=Nannochloropsis oceanica|type=mRNA|length=1159bp|location=Sequence derived from alignment at scaffold_41:92175..93333- (Nannochloropsis oceanica)
CTACCCCCTCATGCCCACCTCTTCTTCATAACCCCGGCTACTGTACATGT
CTTTGAATGTGTCTTTTGAATATTTTTATACATCTGCACAGGGTCCCAAA
AGCTAGTCCTGCGGTCCGCCGGCTCCTCCCCTCTTTATTTTGTTCTCCAA
AATGGCGGCCTGGTACGGTTTGAAGTCCTGCGTTTGCGTCAGTCGCAGGT
CATACTTGTACCGCTCCACCTCCGCCCTCAAACGCTCCTCCGACAACCTT
CGCTCGCCCTCGACGCGCGCGACGTCTGCTTTGGCCTGAGCGACGTCCGT
CGCCGCCTTGTCGTGAATGCGCTTGATCTCCGTCTGGTCGAGATGATGGA
CCGCCACAGCTGTAGAGCCAGCAACCGCCGCCACCAAGCCCAAGACAGCT
ACCGACACTTTCACCATTTCAAATGTCTTATCGGAGCCCCCTTCACTGCC
CGTGCCTGTACCCGTGTGGGTTGTCGAGAGAGACGCCCCCCGCAGCCCGC
GTCCCTTCCCTGTTGGCGCGTATGGATGTGCTTGTGCGTGAACACCTTGG
TGTGGTTCCTTGTCCGCACAATAAGAATTGGGATTCAATATGGACTCGGC
GGTACCGGCTTTTCAAGTGGGGCAGCCGGTAGTGACTACATCACCTCTGT
CAATTTGCATGCTTACGTGGTGATCACCAGTGTCACGTGTGTTTACCGGC
CTGACACGATTGTTTCGACGTTCAGTAAGATCTATGGCGGCAGCGGCCGC
TTTGCGAAGTTCCCCGCCTCCAAGGTGGCCTCGGTAAAGCAAGACACGCT
TTTGATGACCGTCGCACCTGGTGCATCGAACCCTATCAATCCCTTCCAAT
TTCTTCCTCAGGAATGGGAAACCCAGCTGGAGGTGAACTACGTAAAGCCT
TACTTCCATTCCAGCATGCTCTAAGGACTATCGAATGTGGGGGAGGAGCT
CGCTTATTCTAGTGTTCCAACACTTCTTGAGATCCTTTTCCTGCAAAAAC
AGCATGAATCATCGTATGAAGATGTTTCACACCCACGATCCGACCAATGA
CAATGTTCCATGGCCATGAAGACTACGATAATGTTCTCGTCTGCTTTCTA
GTGTTCTGAATGTGTGTCTTTCCTTGGTTGAGCACTTCTTGTTTTGTGTG
CTTATATTC

Coding sequence (CDS) from alignment at scaffold_41:92175..93333-

>mRNA_9919 ID=mRNA_9919|Name=jgi.p|Nanoce1779_2|305751|organism=Nannochloropsis oceanica|type=CDS|length=582bp|location=Sequence derived from alignment at scaffold_41:92175..93333- (Nannochloropsis oceanica)
ATGATGGACCGCCACAGCTGTAGAGCCAGCAACCGCCGCCACCAAGCCCA
AGACAGCTACCGACACTTTCACCATTTCAAATGTCTTATCGGAGCCCCCT
TCACTGCCCGTGCCTGTACCCGTGTGGGTTGTCGAGAGAGACGCCCCCCG
CAGCCCGCGTCCCTTCCCTGTTGGCGCGTATGGATGTGCTTGTGCGTGAA
CACCTTGGTGTGGTTCCTTGTCCGCACAATAAGAATTGGGATTCAATATG
GACTCGGCGGTACCGGCTTTTCAAGTGGGGCAGCCGGTAGTGACTACATC
ACCTCTGTCAATTTGCATGCTTACGTGGTGATCACCAGTGTCACGTGTGT
TTACCGGCCTGACACGATTGTTTCGACGTTCAGTAAGATCTATGGCGGCA
GCGGCCGCTTTGCGAAGTTCCCCGCCTCCAAGGTGGCCTCGGTAAAGCAA
GACACGCTTTTGATGACCGTCGCACCTGGTGCATCGAACCCTATCAATCC
CTTCCAATTTCTTCCTCAGGAATGGGAAACCCAGCTGGAGGTGAACTACG
TAAAGCCTTACTTCCATTCCAGCATGCTCTAA

Synonyms

Publications