jgi.p|Nanoce1779_2|305155, mRNA_9917 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|305155
Unique Name	mRNA_9917
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1083
Alignment location	scaffold_41:82722..84947 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	305241
Track	FilteredModels2
ProteinId	305155

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_41	supercontig	scaffold_41:82722..84947 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|305155	gene_9917	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|305155	mRNA_9917-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9917	CDS_9917	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_41:82722..84947+
coding sequence from alignment at scaffold_41:82722..84947+

mRNA sequence

>mRNA_9917 ID=mRNA_9917|Name=jgi.p|Nanoce1779_2|305155|organism=Nannochloropsis oceanica|type=mRNA|length=1083bp
AGAGAGGGAGGGTGTCATTCATGAAGGAGCACCTTGATCGATCGATCGCC
CATTTTTTACCCATATTAGAAAACCCACATACACAACACATACCTACATC
CTACCCCTCACAGAGAAAGCCAAACGAAACCAATTCGTGCTCCAAGCAAC
ACCAACAGCACTAGTATGGGGAAGAAATCGATGCCTCTCCACCCTGCTCC
TGCTTCCCCCCCGTCCCCTCCTTGTCTTTCGAGACCCTCCGGCAGTGCTA
CCACCATTACTAGCAGCAGTATGTGCGCCGCCCCTGCCAGCGTCGGCGCA
GCCAACAACGAGGCTGATAGACATAGCTGTAGTGTTAGGGAGAGACAAGA
AGGAAATGGAGGGAATAGTTATGACGAGCATCATCGCTCCCAGCTTTTGT
GTACGTCTTCATCGTCCTCTTCCCCAGTTTCCTATCCTGCCACCTCGCCA
TCTCTTTGTTCAGGTGGCCGGGAGCAACAGCAGCAGCACCACCACCACCA
CCAGGAGTACCACCACCACCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGA
TTAGGACGGAGGAAATGGAAGGTGCCTGGGGAGGTAGATGGAAGATAAAG
AAAGTAAAAAGCAAGGAGGAGGGGGAGGAGGAGGCTATGAGCATGGAGGG
GTTGGTGGCATCGGTGCAGCGCTTAAAATGGGAACGGGATGCGATGATGT
CATTGAAGGCAGAAGCCAAGGAAAAGGATCGACGCATCGCCCTGCTCCAA
GCACAGGTGGCGAAGGTGCACGAGGATATGACGGCGGCAGTGGCGACTAG
GCAAGAGGAATGGAGGCGGAAAAAAAAGGCATTGAAGGAGCTGGAGAAGA
AGATGAAGGGCAGCGTGCACCGCACCCTCACTGAATGGGAAATTGCGCGA
AAAGAATGGCCACCATTACCACCCTACAGGGGGAGAAGGAGACACTCTCA
CGGCGCCTCGAGCTGCTGGTCTCTCAAGGAACCAAAAGGGAAAAACGGCT
GATGTTGTTGGAGGAGAAAGCCAAGAGGCAGGACAAGGACACAACCCGCC
TCTCTCAGCTCCAGGAGAAAAAAGAGAAGTATG

protein sequence of jgi.p|Nanoce1779_2|305155

>mRNA_9917-protein ID=mRNA_9917-protein|Name=jgi.p|Nanoce1779_2|305155|organism=Nannochloropsis oceanica|type=polypeptide|length=279bp
MGKKSMPLHPAPASPPSPPCLSRPSGSATTITSSSMCAAPASVGAANNEA
DRHSCSVRERQEGNGGNSYDEHHRSQLLCTSSSSSSPVSYPATSPSLCSG
GREQQQQHHHHHQEYHHHQQQQQQQQQRIRTEEMEGAWGGRWKIKKVKSK
EEGEEEAMSMEGLVASVQRLKWERDAMMSLKAEAKEKDRRIALLQAQVAK
VHEDMTAAVATRQEEWRRKKKALKELEKKMKGSVHRTLTEWEIARKEWPP
LPPYRGRRRHSHGASSCWSLKEPKGKNG*

mRNA from alignment at scaffold_41:82722..84947+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9917 ID=mRNA_9917|Name=jgi.p|Nanoce1779_2|305155|organism=Nannochloropsis oceanica|type=mRNA|length=2226bp|location=Sequence derived from alignment at scaffold_41:82722..84947+ (Nannochloropsis oceanica)
AGAGAGGGAGGGTGTCATTCATGAAGGAGCACCTTGATCGATCGATCGCC
CATTTTTTACCCATATTAGAAAACCCACATACACAACACATACCTACATC
CTACCCCTCACAGAGAAAGCCAAACGAAACCAATTCGTGCTCCAAGCAAC
ACCAACAGCACTAGTATGGGGAAGAAATCGATGCCTCTCCACCCTGCTCC
TGCTTCCCCCCCGTCCCCTCCTTGTCTTTCGAGACCCTCCGGCAGTGCTA
CCACCATTACTAGCAGCAGTATGTGCGCCGCCCCTGCCAGCGTCGGCGCA
GCCAACAACGAGGCTGATAGACATAGCTGTAGTGTTAGGGAGAGACAAGA
AGGAAATGGAGGGAATAGGTGGGTGCGTTCTTACAGTCGTGGAGTACTCG
GGGGAAAAGGGAGCGAGGGGGGGGGAGCGAGGGGGGGAGATGGAGAGGAG
AATGAAGAGGATGCGAGGCGTGGAGGGGAAAATGTAACGGGAGGAGGACA
TACGTGACGAGTGCTGTATACGTACCAGCACGTTCGGATAGCGAACGGAC
CGGTCATGCCCTTCCGTACTGATTTGACGCGCTTCCCCTCCCTCCCTCCT
TTCTCCTTCCCTCACTCCTTCCCTCCCTTCCTCCCTCCTTTTCCTCCTTC
TGACCATAGTTATGACGAGCATCATCGCTCCCAGCTTTTGTGTACGTCTT
CATCGTCCTCTTCCCCAGTTTCCTATCCTGCCACCTCGCCATCTCTTTGT
TCAGGTGGCCGGGAGCAACAGCAGCAGCACCACCACCACCACCAGGAGTA
CCACCACCACCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGATTAGGACGG
AGGAAATGGAAGGTGCCTGGGGAGGTAGATGGAAGATAAAGAAAGTAAAA
AGCAAGGAGGAGGGGGAGGAGGAGGCTATGAGCATGGAGGGGTTGGTGGC
ATCGGTGCAGCGCTTAAAATGGGAACGGGATGCGGTGAGTGGTTGAGGGT
CGAAGGGAGGGAGGGAAGAGGGGAAAGAGAGAAGGGGAGCGCGGTGTTAA
AGCTTGTACTCACTAACTTATTTTATTTCTTGAATATGTGTATACGTAAA
GATGATGTCATTGAAGGCAGAAGCCAAGGAAAAGGATCGACGCATCGCCC
TGCTCCAAGCACAGGTATGCCTCCCCTCCCTCCCTCCCTCCCTTCCTACC
CCCCTACCTCCCTACCTCCCTCCCTTCGCTCCCCCACTAGGCGCAGGTAC
GCCTGCCCTCCTCCCTCCCTCCCTCCCTCCCGTTCATTCCTAGAAGCAGA
CTTCAACTGTGTTTTTTTTTAAAATCACCCTTCCCTCCCTCCTTCCCTCC
CTCCCTCCCCCTGTCCCTCCCCCTCTCTTTCCCTGTCTTTCTTCTCCAGG
TGGCGAAGGTGCACGAGGATATGACGGCGGCAGTGGCGACTAGGCAAGAG
GAATGGAGGCGGAAAAAAAAGGCATTGAAGGTAGGCAGGGAGGGAGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGACTGCCTGACAAGGCT
CTTACTTACTTTGTCTTTCGTGTGTTCGCCTCTCCCTCCCTCCCTCCCTC
CCTCTTTCAGGAGCTGGAGAAGAAGATGAAGGGCAGCGTGCACCGCACCC
TCACTGAATGGGAAATTGCGCGAAAAGAATGGTCGGAGAAGGAGGGGAAG
ATGGAGGTATGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGCA
TGCACAGTGTTGTTGCTTAGTTGAGCACAGAGAGCGTGGGCGAAGAAGGA
AGAGGGAGGGAGGGAGGGAGGGAGGGAATCGATTTATTTGACATTCCGCC
TTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCAGGCCAC
CATTACCACCCTACAGGGGGAGAAGGAGACACTCTCACGGCGCCTCGAGC
TGCTGGTCTCTCAAGGAACCAAAAGGGAAAAACGGCTGATGTTGTTGGAG
GTAGGGAGGGAGGGAGTGAGGGAGGGAGGGAGGGATTGAAGATGGATGGG
TGGGCCAGGAAAACGCAACAGAGCACTTACGCTTCGCGTCATCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTTCCTTCCCTCCCTCGTCC
ATCTAGGAGAAAGCCAAGAGGCAGGACAAGGACACAACCCGCCTCTCTCA
GCTCCAGGAGAAAAAAGAGAAGTATG

Coding sequence (CDS) from alignment at scaffold_41:82722..84947+

>mRNA_9917 ID=mRNA_9917|Name=jgi.p|Nanoce1779_2|305155|organism=Nannochloropsis oceanica|type=CDS|length=5022bp|location=Sequence derived from alignment at scaffold_41:82722..84947+ (Nannochloropsis oceanica)
ATGGGGAAGAAATCGATGCCTCTCCACCCTGCTCCTGCTTCCCCCCCGTC
CCCTCCTTGTCTTTCGAGACCCTCCGGCAGTGCTACCACCATTACTAGCA
GCAGTATGTGCGCCGCCCCTGCCAGCGTCGGCGCAGCCAACAACGAGGCT
GATAGACATAGCTGTAGTGTTAGGGAGAGACAAGAAGGAAATGGAGGGAA
TAGTTATGACGAGCATCATCGCTCCCAGCTTTTGTGTACGTCTTCATCGT
CCTCTTCCCCAGTTTCCTATCCTGCCACCTCGCCATCTCTTTGTTCAGGT
GGCCGGGAGCAACAGCAGCAGCACCACCACCACCACCAGGAGTACCACCA
CCACCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGATTAGGACGGAGGAAA
TGGAAGGTGCCTGGGGAGGTAGATGGAAGATAAAGAAAGTAAAAAGCAAG
GAGGAGGGGGAGGAGGAGGCTATGAGCATGGAGGGGTTGGTGGCATCGGT
GCAGCGCTTAAAATGGGAACGGGATGCGATGATGTCATTGAAGGCAGAAG
CCAAGGAAAAGGATCGACGCATCGCCCTGCTCCAAGCACAGGTGGCGAAG
GTGCACGAGGATATGACGGCGGCAGTGGCGACTAGGCAAGAGGAATGGAG
GCGGAAAAAAAAGGCATTGAAGGAGCTGGAGAAGAAGATGAAGGGCAGCG
TGCACCGCACCCTCACTGAATGGGAAATTGCGCGAAAAGAATGGCCACCA
TTACCACCCTACAGGGGGAGAAGGAGACACTCTCACGGCGCCTCGAGCTG
CTGGTCTCTCAAGGAACCAAAAGGGAAAAACGGCTGAATGGGGAAGAAAT
CGATGCCTCTCCACCCTGCTCCTGCTTCCCCCCCGTCCCCTCCTTGTCTT
TCGAGACCCTCCGGCAGTGCTACCACCATTACTAGCAGCAGTATGTGCGC
CGCCCCTGCCAGCGTCGGCGCAGCCAACAACGAGGCTGATAGACATAGCT
GTAGTGTTAGGGAGAGACAAGAAGGAAATGGAGGGAATAGTTATGACGAG
CATCATCGCTCCCAGCTTTTGTGTACGTCTTCATCGTCCTCTTCCCCAGT
TTCCTATCCTGCCACCTCGCCATCTCTTTGTTCAGGTGGCCGGGAGCAAC
AGCAGCAGCACCACCACCACCACCAGGAGTACCACCACCACCAGCAGCAG
CAGCAGCAGCAGCAGCAGCGGATTAGGACGGAGGAAATGGAAGGTGCCTG
GGGAGGTAGATGGAAGATAAAGAAAGTAAAAAGCAAGGAGGAGGGGGAGG
AGGAGGCTATGAGCATGGAGGGGTTGGTGGCATCGGTGCAGCGCTTAAAA
TGGGAACGGGATGCGATGATGTCATTGAAGGCAGAAGCCAAGGAAAAGGA
TCGACGCATCGCCCTGCTCCAAGCACAGGTGGCGAAGGTGCACGAGGATA
TGACGGCGGCAGTGGCGACTAGGCAAGAGGAATGGAGGCGGAAAAAAAAG
GCATTGAAGGAGCTGGAGAAGAAGATGAAGGGCAGCGTGCACCGCACCCT
CACTGAATGGGAAATTGCGCGAAAAGAATGGCCACCATTACCACCCTACA
GGGGGAGAAGGAGACACTCTCACGGCGCCTCGAGCTGCTGGTCTCTCAAG
GAACCAAAAGGGAAAAACGGCTGAATGGGGAAGAAATCGATGCCTCTCCA
CCCTGCTCCTGCTTCCCCCCCGTCCCCTCCTTGTCTTTCGAGACCCTCCG
GCAGTGCTACCACCATTACTAGCAGCAGTATGTGCGCCGCCCCTGCCAGC
GTCGGCGCAGCCAACAACGAGGCTGATAGACATAGCTGTAGTGTTAGGGA
GAGACAAGAAGGAAATGGAGGGAATAGTTATGACGAGCATCATCGCTCCC
AGCTTTTGTGTACGTCTTCATCGTCCTCTTCCCCAGTTTCCTATCCTGCC
ACCTCGCCATCTCTTTGTTCAGGTGGCCGGGAGCAACAGCAGCAGCACCA
CCACCACCACCAGGAGTACCACCACCACCAGCAGCAGCAGCAGCAGCAGC
AGCAGCGGATTAGGACGGAGGAAATGGAAGGTGCCTGGGGAGGTAGATGG
AAGATAAAGAAAGTAAAAAGCAAGGAGGAGGGGGAGGAGGAGGCTATGAG
CATGGAGGGGTTGGTGGCATCGGTGCAGCGCTTAAAATGGGAACGGGATG
CGATGATGTCATTGAAGGCAGAAGCCAAGGAAAAGGATCGACGCATCGCC
CTGCTCCAAGCACAGGTGGCGAAGGTGCACGAGGATATGACGGCGGCAGT
GGCGACTAGGCAAGAGGAATGGAGGCGGAAAAAAAAGGCATTGAAGGAGC
TGGAGAAGAAGATGAAGGGCAGCGTGCACCGCACCCTCACTGAATGGGAA
ATTGCGCGAAAAGAATGGCCACCATTACCACCCTACAGGGGGAGAAGGAG
ACACTCTCACGGCGCCTCGAGCTGCTGGTCTCTCAAGGAACCAAAAGGGA
AAAACGGCTGAATGGGGAAGAAATCGATGCCTCTCCACCCTGCTCCTGCT
TCCCCCCCGTCCCCTCCTTGTCTTTCGAGACCCTCCGGCAGTGCTACCAC
CATTACTAGCAGCAGTATGTGCGCCGCCCCTGCCAGCGTCGGCGCAGCCA
ACAACGAGGCTGATAGACATAGCTGTAGTGTTAGGGAGAGACAAGAAGGA
AATGGAGGGAATAGTTATGACGAGCATCATCGCTCCCAGCTTTTGTGTAC
GTCTTCATCGTCCTCTTCCCCAGTTTCCTATCCTGCCACCTCGCCATCTC
TTTGTTCAGGTGGCCGGGAGCAACAGCAGCAGCACCACCACCACCACCAG
GAGTACCACCACCACCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGATTAG
GACGGAGGAAATGGAAGGTGCCTGGGGAGGTAGATGGAAGATAAAGAAAG
TAAAAAGCAAGGAGGAGGGGGAGGAGGAGGCTATGAGCATGGAGGGGTTG
GTGGCATCGGTGCAGCGCTTAAAATGGGAACGGGATGCGATGATGTCATT
GAAGGCAGAAGCCAAGGAAAAGGATCGACGCATCGCCCTGCTCCAAGCAC
AGGTGGCGAAGGTGCACGAGGATATGACGGCGGCAGTGGCGACTAGGCAA
GAGGAATGGAGGCGGAAAAAAAAGGCATTGAAGGAGCTGGAGAAGAAGAT
GAAGGGCAGCGTGCACCGCACCCTCACTGAATGGGAAATTGCGCGAAAAG
AATGGCCACCATTACCACCCTACAGGGGGAGAAGGAGACACTCTCACGGC
GCCTCGAGCTGCTGGTCTCTCAAGGAACCAAAAGGGAAAAACGGCTGAAT
GGGGAAGAAATCGATGCCTCTCCACCCTGCTCCTGCTTCCCCCCCGTCCC
CTCCTTGTCTTTCGAGACCCTCCGGCAGTGCTACCACCATTACTAGCAGC
AGTATGTGCGCCGCCCCTGCCAGCGTCGGCGCAGCCAACAACGAGGCTGA
TAGACATAGCTGTAGTGTTAGGGAGAGACAAGAAGGAAATGGAGGGAATA
GTTATGACGAGCATCATCGCTCCCAGCTTTTGTGTACGTCTTCATCGTCC
TCTTCCCCAGTTTCCTATCCTGCCACCTCGCCATCTCTTTGTTCAGGTGG
CCGGGAGCAACAGCAGCAGCACCACCACCACCACCAGGAGTACCACCACC
ACCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGATTAGGACGGAGGAAATG
GAAGGTGCCTGGGGAGGTAGATGGAAGATAAAGAAAGTAAAAAGCAAGGA
GGAGGGGGAGGAGGAGGCTATGAGCATGGAGGGGTTGGTGGCATCGGTGC
AGCGCTTAAAATGGGAACGGGATGCGATGATGTCATTGAAGGCAGAAGCC
AAGGAAAAGGATCGACGCATCGCCCTGCTCCAAGCACAGGTGGCGAAGGT
GCACGAGGATATGACGGCGGCAGTGGCGACTAGGCAAGAGGAATGGAGGC
GGAAAAAAAAGGCATTGAAGGAGCTGGAGAAGAAGATGAAGGGCAGCGTG
CACCGCACCCTCACTGAATGGGAAATTGCGCGAAAAGAATGGCCACCATT
ACCACCCTACAGGGGGAGAAGGAGACACTCTCACGGCGCCTCGAGCTGCT
GGTCTCTCAAGGAACCAAAAGGGAAAAACGGCTGAATGGGGAAGAAATCG
ATGCCTCTCCACCCTGCTCCTGCTTCCCCCCCGTCCCCTCCTTGTCTTTC
GAGACCCTCCGGCAGTGCTACCACCATTACTAGCAGCAGTATGTGCGCCG
CCCCTGCCAGCGTCGGCGCAGCCAACAACGAGGCTGATAGACATAGCTGT
AGTGTTAGGGAGAGACAAGAAGGAAATGGAGGGAATAGTTATGACGAGCA
TCATCGCTCCCAGCTTTTGTGTACGTCTTCATCGTCCTCTTCCCCAGTTT
CCTATCCTGCCACCTCGCCATCTCTTTGTTCAGGTGGCCGGGAGCAACAG
CAGCAGCACCACCACCACCACCAGGAGTACCACCACCACCAGCAGCAGCA
GCAGCAGCAGCAGCAGCGGATTAGGACGGAGGAAATGGAAGGTGCCTGGG
GAGGTAGATGGAAGATAAAGAAAGTAAAAAGCAAGGAGGAGGGGGAGGAG
GAGGCTATGAGCATGGAGGGGTTGGTGGCATCGGTGCAGCGCTTAAAATG
GGAACGGGATGCGATGATGTCATTGAAGGCAGAAGCCAAGGAAAAGGATC
GACGCATCGCCCTGCTCCAAGCACAGGTGGCGAAGGTGCACGAGGATATG
ACGGCGGCAGTGGCGACTAGGCAAGAGGAATGGAGGCGGAAAAAAAAGGC
ATTGAAGGAGCTGGAGAAGAAGATGAAGGGCAGCGTGCACCGCACCCTCA
CTGAATGGGAAATTGCGCGAAAAGAATGGCCACCATTACCACCCTACAGG
GGGAGAAGGAGACACTCTCACGGCGCCTCGAGCTGCTGGTCTCTCAAGGA
ACCAAAAGGGAAAAACGGCTGA

Synonyms

Publications