jgi.p|Nanoce1779_2|608305, mRNA_9915 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|608305
Unique NamemRNA_9915
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length758
Alignment locationscaffold_41:76830..78089 -

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Properties
Property NameValue
TranscriptId608391
TrackFilteredModels2
ProteinId608305
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_41supercontigscaffold_41:76830..78089 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608305gene_9915Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608305mRNA_9915-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9915CDS_9915Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9915 ID=mRNA_9915|Name=jgi.p|Nanoce1779_2|608305|organism=Nannochloropsis oceanica|type=mRNA|length=758bp
ACAGCACCCACCCTCTCTTAATTTAAAAATGAAGTTGACTGTTTCCTCCG
CCCTCCTGGCCGGCGTCGCCCTCCTCTCCACCCTGTCCGGTGTCAGCGCC
GAAGGCATTTTCCAAACCTACGCCAAGCCCCTGGTGGTGAAGAAGGGCAG
GATCGTGACGGTCACCCAAAGCTTTGTGGTCAAGAGCTTTGACGGTGCTT
CTAAGGACCCTCCTATCCAGGCTGGGCTCTCGACTAACCCGATGTTTACT
GAGTGGAACTTCGACAGCGACTTTTCACCCCTCTCCAATGCTAACAAAAC
AAAACACAACAAGACGAGCAAGGCGGACAAGCACGCAAATGACCTCGGGA
TCACCATCAAGTCGGCCAAGATCTTCCCCAATACGTGGAGGCCTAAAGAG
TCTGCGAACATTACCTCGGACGACGATGGTGATGTCGCCATCTTCGAGCT
CCCGCAGGACGGCCTGACACTGAACAGGGAGTACAAGATCACCTACAAGG
TGCGCGTCGGGAGGGGCATCACCTCTGGTACCGTCCTCGAGCTTCCGTTT
AACTTCAACGGCCCCAGCATGGGTTTCCCGGATTCCTTGGAGGTGCTTGT
CAGGTAACCAAATGCCTTGGCCTGGCCCCGCTCCCTGATGGGAAGAAAAG
GGTTTGAGATGCATCATGTCGCGGGCATGGTTGAGGAGGAGTGATGGGCC
GCCTGGTGTATGCCATCTGTGTGCGTGTGTGTGCGTGTGTGTGTGTGTGT
GTGTGTGT
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protein sequence of jgi.p|Nanoce1779_2|608305

>mRNA_9915-protein ID=mRNA_9915-protein|Name=jgi.p|Nanoce1779_2|608305|organism=Nannochloropsis oceanica|type=polypeptide|length=193bp
MKLTVSSALLAGVALLSTLSGVSAEGIFQTYAKPLVVKKGRIVTVTQSFV
VKSFDGASKDPPIQAGLSTNPMFTEWNFDSDFSPLSNANKTKHNKTSKAD
KHANDLGITIKSAKIFPNTWRPKESANITSDDDGDVAIFELPQDGLTLNR
EYKITYKVRVGRGITSGTVLELPFNFNGPSMGFPDSLEVLVR*
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mRNA from alignment at scaffold_41:76830..78089-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9915 ID=mRNA_9915|Name=jgi.p|Nanoce1779_2|608305|organism=Nannochloropsis oceanica|type=mRNA|length=1260bp|location=Sequence derived from alignment at scaffold_41:76830..78089- (Nannochloropsis oceanica)
ACAGCACCCACCCTCTCTTAATTTAAAAATGAAGTTGACTGTTTCCTCCG
CCCTCCTGGCCGGCGTCGCCCTCCTCTCCACCCTGGTAAGCTCTGACACA
CCCTCATAAGCATGCAAGTACCTGTCCCATAAATCGATTTTACGCTCAGG
TTTATTTAATTGCCTCCCCTCCTCCTCCCTTTCTTGATCTATCCTTCCTC
CCTTCAGTCCGGTGTCAGCGCCGAAGGCATTTTCCAAACCTACGCCAAGC
CCCTGGTGGTGAAGAAGGGCAGGATCGTGACGGTCACCCAAAGCTTTGTG
GTCAAGAGCTTTGACGGTGCTTCTAAGGACCCTCCTATCCAGGCTGGGGT
ACGTTAAATGAAGAAGGCAGAGGAAGAGGAAGGGAGGGAGGGCTTCCCCC
AACAGATTCGGTGCCGGGTCTGGCATGCTCACAGACGACTCGACGCGTTT
TTCTTTCTCGTCGCCTGATGACGTATAGGTGATACTTACTCCTTCCTTTC
TTTCTTTCCTTCCTTTCCCTCCCAACACTCCCTGTCTCCATCCACCGACC
TCTCCACAGCTCTCGACTAACCCGATGTTTACTGAGTGGAACTTCGACAG
CGACTTTTCACCCCTCTCCAATGCTAACAAAACAAAACACAACAAGACGA
GCAAGGCGGACAAGCACGCAAATGACCTCGGGATCACCATCAAGTCGGCC
AAGATCTTCCCCAATACGTGGAGGCCTAAGTGAGTGAGACAGGCGGGCAG
GAGGAGAGGGAAGAAGGGGGGGAAAAGGGAGAAGGAGGGAGGAAATAGGA
GGTATATGAGATTACAATCTCTCCTCTTCCAGCCCTAATTCGATTCCTAA
TGCCTCCTCCCCTTTCTTTCTCTCCTCTATCTGACTCGTCCCCCACAGAG
AGTCTGCGAACATTACCTCGGACGACGATGGTGATGTCGCCATCTTCGAG
CTCCCGCAGGACGGCCTGACACTGAACAGGGAGTACAAGATCACCTACAA
GGTGCGCGTCGGGAGGGGCATCACCTCTGGTACCGTCCTCGAGCTTCCGT
TTAACTTCAACGGCCCCAGCATGGGTTTCCCGGATTCCTTGGAGGTGCTT
GTCAGGTAACCAAATGCCTTGGCCTGGCCCCGCTCCCTGATGGGAAGAAA
AGGGTTTGAGATGCATCATGTCGCGGGCATGGTTGAGGAGGAGTGATGGG
CCGCCTGGTGTATGCCATCTGTGTGCGTGTGTGTGCGTGTGTGTGTGTGT
GTGTGTGTGT
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Coding sequence (CDS) from alignment at scaffold_41:76830..78089-

>mRNA_9915 ID=mRNA_9915|Name=jgi.p|Nanoce1779_2|608305|organism=Nannochloropsis oceanica|type=CDS|length=2316bp|location=Sequence derived from alignment at scaffold_41:76830..78089- (Nannochloropsis oceanica)
AGAGTCTGCGAACATTACCTCGGACGACGATGGTGATGTCGCCATCTTCG
AGCTCCCGCAGGACGGCCTGACACTGAACAGGGAGTACAAGATCACCTAC
AAGGTGCGCGTCGGGAGGGGCATCACCTCTGGTACCGTCCTCGAGCTTCC
GTTTAACTTCAACGGCCCCAGCATGGGTTTCCCGGATTCCTTGGAGGTGC
TTGTCAGGTAACTCTCGACTAACCCGATGTTTACTGAGTGGAACTTCGAC
AGCGACTTTTCACCCCTCTCCAATGCTAACAAAACAAAACACAACAAGAC
GAGCAAGGCGGACAAGCACGCAAATGACCTCGGGATCACCATCAAGTCGG
CCAAGATCTTCCCCAATACGTGGAGGCCTAATCCGGTGTCAGCGCCGAAG
GCATTTTCCAAACCTACGCCAAGCCCCTGGTGGTGAAGAAGGGCAGGATC
GTGACGGTCACCCAAAGCTTTGTGGTCAAGAGCTTTGACGGTGCTTCTAA
GGACCCTCCTATCCAGGCTGGGATGAAGTTGACTGTTTCCTCCGCCCTCC
TGGCCGGCGTCGCCCTCCTCTCCACCCTGAGAGTCTGCGAACATTACCTC
GGACGACGATGGTGATGTCGCCATCTTCGAGCTCCCGCAGGACGGCCTGA
CACTGAACAGGGAGTACAAGATCACCTACAAGGTGCGCGTCGGGAGGGGC
ATCACCTCTGGTACCGTCCTCGAGCTTCCGTTTAACTTCAACGGCCCCAG
CATGGGTTTCCCGGATTCCTTGGAGGTGCTTGTCAGGTAACTCTCGACTA
ACCCGATGTTTACTGAGTGGAACTTCGACAGCGACTTTTCACCCCTCTCC
AATGCTAACAAAACAAAACACAACAAGACGAGCAAGGCGGACAAGCACGC
AAATGACCTCGGGATCACCATCAAGTCGGCCAAGATCTTCCCCAATACGT
GGAGGCCTAATCCGGTGTCAGCGCCGAAGGCATTTTCCAAACCTACGCCA
AGCCCCTGGTGGTGAAGAAGGGCAGGATCGTGACGGTCACCCAAAGCTTT
GTGGTCAAGAGCTTTGACGGTGCTTCTAAGGACCCTCCTATCCAGGCTGG
GATGAAGTTGACTGTTTCCTCCGCCCTCCTGGCCGGCGTCGCCCTCCTCT
CCACCCTGAGAGTCTGCGAACATTACCTCGGACGACGATGGTGATGTCGC
CATCTTCGAGCTCCCGCAGGACGGCCTGACACTGAACAGGGAGTACAAGA
TCACCTACAAGGTGCGCGTCGGGAGGGGCATCACCTCTGGTACCGTCCTC
GAGCTTCCGTTTAACTTCAACGGCCCCAGCATGGGTTTCCCGGATTCCTT
GGAGGTGCTTGTCAGGTAACTCTCGACTAACCCGATGTTTACTGAGTGGA
ACTTCGACAGCGACTTTTCACCCCTCTCCAATGCTAACAAAACAAAACAC
AACAAGACGAGCAAGGCGGACAAGCACGCAAATGACCTCGGGATCACCAT
CAAGTCGGCCAAGATCTTCCCCAATACGTGGAGGCCTAATCCGGTGTCAG
CGCCGAAGGCATTTTCCAAACCTACGCCAAGCCCCTGGTGGTGAAGAAGG
GCAGGATCGTGACGGTCACCCAAAGCTTTGTGGTCAAGAGCTTTGACGGT
GCTTCTAAGGACCCTCCTATCCAGGCTGGGATGAAGTTGACTGTTTCCTC
CGCCCTCCTGGCCGGCGTCGCCCTCCTCTCCACCCTGAGAGTCTGCGAAC
ATTACCTCGGACGACGATGGTGATGTCGCCATCTTCGAGCTCCCGCAGGA
CGGCCTGACACTGAACAGGGAGTACAAGATCACCTACAAGGTGCGCGTCG
GGAGGGGCATCACCTCTGGTACCGTCCTCGAGCTTCCGTTTAACTTCAAC
GGCCCCAGCATGGGTTTCCCGGATTCCTTGGAGGTGCTTGTCAGGTAACT
CTCGACTAACCCGATGTTTACTGAGTGGAACTTCGACAGCGACTTTTCAC
CCCTCTCCAATGCTAACAAAACAAAACACAACAAGACGAGCAAGGCGGAC
AAGCACGCAAATGACCTCGGGATCACCATCAAGTCGGCCAAGATCTTCCC
CAATACGTGGAGGCCTAATCCGGTGTCAGCGCCGAAGGCATTTTCCAAAC
CTACGCCAAGCCCCTGGTGGTGAAGAAGGGCAGGATCGTGACGGTCACCC
AAAGCTTTGTGGTCAAGAGCTTTGACGGTGCTTCTAAGGACCCTCCTATC
CAGGCTGGGATGAAGTTGACTGTTTCCTCCGCCCTCCTGGCCGGCGTCGC
CCTCCTCTCCACCCTG
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Synonyms
Publications