jgi.p|Nanoce1779_2|608301, mRNA_9914 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|608301
Unique Name	mRNA_9914
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	826
Alignment location	scaffold_41:72077..73657 -

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Properties


Property Name	Value
TranscriptId	608387
Track	FilteredModels2
ProteinId	608301

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_41	supercontig	scaffold_41:72077..73657 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|608301	gene_9914	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|608301	mRNA_9914-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9914	CDS_9914	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_41:72077..73657-
coding sequence from alignment at scaffold_41:72077..73657-

mRNA sequence

>mRNA_9914 ID=mRNA_9914|Name=jgi.p|Nanoce1779_2|608301|organism=Nannochloropsis oceanica|type=mRNA|length=826bp
CAACAGGGCACAAGCAATGGAGGAACTTGACGAAAGCCAAGCAGGGCCTG
CCTCGGCAGTATCAGAGGAAATGCAAAACTGGGCAGCGGAGCAGGTCTTT
AAGCTTGCCAGGGAACAAGGCGCTCAACCTGAGGGTTTCTGGGAAAATGC
ACAGGCCTTTGCCGCGGCGATTGATTGGGGCGAACGCTGGATCCAGGGTT
TAGTGGCCTTTCACGTCCTCTTGTGGTTTCTCGTCATCGGCTTCCGCAAG
AACATGAACGTCCAGGCCTCCATTTTCTTCTTTGTTTGTGGCCTGGTCGC
TGCGTCAGAACCCCTCAATACTCGGCTAAGAGAGAAGTGGTGGACACACT
TCTCCACACAAAATTACTTCGACGAGCGAGGCGTTTTCGCCGTCTGTATG
CTCACTGGGCCTCTCATTGTCCTCACGTGTCTCCAACTGTGCATCTTTCT
CCACGCCGCGGCCACCATGTTGGTTCAAGTGAAACGTGCAGAGCTCCGCA
GCAAGCACAGCAAAAACCTCCGGGTGAAAAAGCAGCAATAATAATAATTT
ACAATAGTAGGGCAAGGGGAAGGCGGGCTGGGAGAAGGGAAGGGGGAAAG
GAGTAAGAGGGAAGATATGTAGAGAAAATGGATTGGATTGGAGAAGAAAA
GAAAAAAAGAAACTTGGAAGAATCTAATCAAGTTGATGGATAATGTTGGA
ATAACATTACCATCGAATACATTAGGGGGGAAGGAAACCTAATCAAGTTG
ATGGATAATGTTGGAATAACATTACCATCGAATACATTAGGGGGGAAGGA
AACCTAATCAAGTTGATGGATAATGT

protein sequence of jgi.p|Nanoce1779_2|608301

>mRNA_9914-protein ID=mRNA_9914-protein|Name=jgi.p|Nanoce1779_2|608301|organism=Nannochloropsis oceanica|type=polypeptide|length=175bp
MEELDESQAGPASAVSEEMQNWAAEQVFKLAREQGAQPEGFWENAQAFAA
AIDWGERWIQGLVAFHVLLWFLVIGFRKNMNVQASIFFFVCGLVAASEPL
NTRLREKWWTHFSTQNYFDERGVFAVCMLTGPLIVLTCLQLCIFLHAAAT
MLVQVKRAELRSKHSKNLRVKKQQ*

mRNA from alignment at scaffold_41:72077..73657-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9914 ID=mRNA_9914|Name=jgi.p|Nanoce1779_2|608301|organism=Nannochloropsis oceanica|type=mRNA|length=1581bp|location=Sequence derived from alignment at scaffold_41:72077..73657- (Nannochloropsis oceanica)
CAACAGGGCACAAGCAATGGAGGAACTTGACGAAAGCCAAGCAGGGCCTG
CCTCGGCAGTATCAGAGGAAATGCAAAACTGGGCAGCGGAGCAGGTAGGA
GGGAGGAAGGGGGAGTGCGAGGGTGGTAAAAGGGCACGTATCCTCACTCA
CACTTGACTCTGTCCCTCCTGCCTTGCACGAGCAGGTCTTTAAGCTTGCC
AGGGAACAAGGCGCTCAACCTGAGGGTTTCTGGGAAAATGCACAGGGTAG
GGAAGCACGGAGGGAGGGGAGGAGGGGAGGGAGCGGGGACGACAAGGGAA
GAGTAAAAGAATGAACAATTAACGGATATACATACATACACATACACCTT
TTCCGCACACAGCCTTTGCCGCGGCGATTGATTGGGGCGAACGCTGGATC
CAGGTACAAATGAGACGACAGAGATGGTCACACTTCCTCCCTCCTTTCCC
AGCACTAAATTCTTCCCTGCTCTTGTTCCAAATTTGCCGGTCGAGGAGCT
TAGCATAACCACCCGACCCTCTCCCCCTCGATACTTCCCCTAATTTAATC
ATTCAGGGTTTAGTGGCCTTTCACGTCCTCTTGTGGTTTCTCGTCATCGG
CTTCCGCAAGAACATGAACGTCCAGGTATGAAGGCCCTCCCTCCCTTCTT
CCCTCCCTTCCTCCCTCCCGTTCGCACCTTTACCAAGAAAGGACATCAGC
TCTCCCACCTCTTTTCCGCCCTGCCTTCTCTCTCCTTTCCTTATTAATTG
CTTCGTGTCTCCCCCTTCCTCCCCTCCCTCCCCCAGGCCTCCATTTTCTT
CTTTGTTTGTGGCCTGGTCGCTGCGTCAGAACCCCTCAATACTCGGCTAA
GAGAGAAGTGGTGGACGTAAGGAGGGAGGCAGGCATGGGGGGGAGGCAGG
GAGGGAGGAAGGGAGGGACTGACGGCGTCTAGGATGACCCTGTCCATCTC
ATCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTTCTCCCTCC
CTCTCTTTGACAGACACTTCTCCACACAAAATTACTTCGACGAGCGAGGC
GTTTTCGCCGTCTGTATGCTCACTGGGCCTCTCATTGTCCTCACGTGTCT
CCAACTGGTAAGGCCTCCGTCCCTCCGTCCCTCCCTCCGTCCCTCCCTCC
CTTCCTGATCCCCTCCGTCCCTCCTTCCCTCCCGCCCTTCCCAGTGCATC
TTTCTCCACGCCGCGGCCACCATGTTGGTTCAAGTGAAACGTGCAGAGCT
CCGCAGCAAGCACAGCAAAAACCTCCGGGTGAAAAAGCAGCAATAATAAT
AATTTACAATAGTAGGGCAAGGGGAAGGCGGGCTGGGAGAAGGGAAGGGG
GAAAGGAGTAAGAGGGAAGATATGTAGAGAAAATGGATTGGATTGGAGAA
GAAAAGAAAAAAAGAAACTTGGAAGAATCTAATCAAGTTGATGGATAATG
TTGGAATAACATTACCATCGAATACATTAGGGGGGAAGGAAACCTAATCA
AGTTGATGGATAATGTTGGAATAACATTACCATCGAATACATTAGGGGGG
AAGGAAACCTAATCAAGTTGATGGATAATGT

Coding sequence (CDS) from alignment at scaffold_41:72077..73657-

>mRNA_9914 ID=mRNA_9914|Name=jgi.p|Nanoce1779_2|608301|organism=Nannochloropsis oceanica|type=CDS|length=3675bp|location=Sequence derived from alignment at scaffold_41:72077..73657- (Nannochloropsis oceanica)
TGCATCTTTCTCCACGCCGCGGCCACCATGTTGGTTCAAGTGAAACGTGC
AGAGCTCCGCAGCAAGCACAGCAAAAACCTCCGGGTGAAAAAGCAGCAAT
AAACACTTCTCCACACAAAATTACTTCGACGAGCGAGGCGTTTTCGCCGT
CTGTATGCTCACTGGGCCTCTCATTGTCCTCACGTGTCTCCAACTGGCCT
CCATTTTCTTCTTTGTTTGTGGCCTGGTCGCTGCGTCAGAACCCCTCAAT
ACTCGGCTAAGAGAGAAGTGGTGGACGGTTTAGTGGCCTTTCACGTCCTC
TTGTGGTTTCTCGTCATCGGCTTCCGCAAGAACATGAACGTCCAGCCTTT
GCCGCGGCGATTGATTGGGGCGAACGCTGGATCCAGGTCTTTAAGCTTGC
CAGGGAACAAGGCGCTCAACCTGAGGGTTTCTGGGAAAATGCACAGGATG
GAGGAACTTGACGAAAGCCAAGCAGGGCCTGCCTCGGCAGTATCAGAGGA
AATGCAAAACTGGGCAGCGGAGCAGTGCATCTTTCTCCACGCCGCGGCCA
CCATGTTGGTTCAAGTGAAACGTGCAGAGCTCCGCAGCAAGCACAGCAAA
AACCTCCGGGTGAAAAAGCAGCAATAAACACTTCTCCACACAAAATTACT
TCGACGAGCGAGGCGTTTTCGCCGTCTGTATGCTCACTGGGCCTCTCATT
GTCCTCACGTGTCTCCAACTGGCCTCCATTTTCTTCTTTGTTTGTGGCCT
GGTCGCTGCGTCAGAACCCCTCAATACTCGGCTAAGAGAGAAGTGGTGGA
CGGTTTAGTGGCCTTTCACGTCCTCTTGTGGTTTCTCGTCATCGGCTTCC
GCAAGAACATGAACGTCCAGCCTTTGCCGCGGCGATTGATTGGGGCGAAC
GCTGGATCCAGGTCTTTAAGCTTGCCAGGGAACAAGGCGCTCAACCTGAG
GGTTTCTGGGAAAATGCACAGGATGGAGGAACTTGACGAAAGCCAAGCAG
GGCCTGCCTCGGCAGTATCAGAGGAAATGCAAAACTGGGCAGCGGAGCAG
TGCATCTTTCTCCACGCCGCGGCCACCATGTTGGTTCAAGTGAAACGTGC
AGAGCTCCGCAGCAAGCACAGCAAAAACCTCCGGGTGAAAAAGCAGCAAT
AAACACTTCTCCACACAAAATTACTTCGACGAGCGAGGCGTTTTCGCCGT
CTGTATGCTCACTGGGCCTCTCATTGTCCTCACGTGTCTCCAACTGGCCT
CCATTTTCTTCTTTGTTTGTGGCCTGGTCGCTGCGTCAGAACCCCTCAAT
ACTCGGCTAAGAGAGAAGTGGTGGACGGTTTAGTGGCCTTTCACGTCCTC
TTGTGGTTTCTCGTCATCGGCTTCCGCAAGAACATGAACGTCCAGCCTTT
GCCGCGGCGATTGATTGGGGCGAACGCTGGATCCAGGTCTTTAAGCTTGC
CAGGGAACAAGGCGCTCAACCTGAGGGTTTCTGGGAAAATGCACAGGATG
GAGGAACTTGACGAAAGCCAAGCAGGGCCTGCCTCGGCAGTATCAGAGGA
AATGCAAAACTGGGCAGCGGAGCAGTGCATCTTTCTCCACGCCGCGGCCA
CCATGTTGGTTCAAGTGAAACGTGCAGAGCTCCGCAGCAAGCACAGCAAA
AACCTCCGGGTGAAAAAGCAGCAATAAACACTTCTCCACACAAAATTACT
TCGACGAGCGAGGCGTTTTCGCCGTCTGTATGCTCACTGGGCCTCTCATT
GTCCTCACGTGTCTCCAACTGGCCTCCATTTTCTTCTTTGTTTGTGGCCT
GGTCGCTGCGTCAGAACCCCTCAATACTCGGCTAAGAGAGAAGTGGTGGA
CGGTTTAGTGGCCTTTCACGTCCTCTTGTGGTTTCTCGTCATCGGCTTCC
GCAAGAACATGAACGTCCAGCCTTTGCCGCGGCGATTGATTGGGGCGAAC
GCTGGATCCAGGTCTTTAAGCTTGCCAGGGAACAAGGCGCTCAACCTGAG
GGTTTCTGGGAAAATGCACAGGATGGAGGAACTTGACGAAAGCCAAGCAG
GGCCTGCCTCGGCAGTATCAGAGGAAATGCAAAACTGGGCAGCGGAGCAG
TGCATCTTTCTCCACGCCGCGGCCACCATGTTGGTTCAAGTGAAACGTGC
AGAGCTCCGCAGCAAGCACAGCAAAAACCTCCGGGTGAAAAAGCAGCAAT
AAACACTTCTCCACACAAAATTACTTCGACGAGCGAGGCGTTTTCGCCGT
CTGTATGCTCACTGGGCCTCTCATTGTCCTCACGTGTCTCCAACTGGCCT
CCATTTTCTTCTTTGTTTGTGGCCTGGTCGCTGCGTCAGAACCCCTCAAT
ACTCGGCTAAGAGAGAAGTGGTGGACGGTTTAGTGGCCTTTCACGTCCTC
TTGTGGTTTCTCGTCATCGGCTTCCGCAAGAACATGAACGTCCAGCCTTT
GCCGCGGCGATTGATTGGGGCGAACGCTGGATCCAGGTCTTTAAGCTTGC
CAGGGAACAAGGCGCTCAACCTGAGGGTTTCTGGGAAAATGCACAGGATG
GAGGAACTTGACGAAAGCCAAGCAGGGCCTGCCTCGGCAGTATCAGAGGA
AATGCAAAACTGGGCAGCGGAGCAGTGCATCTTTCTCCACGCCGCGGCCA
CCATGTTGGTTCAAGTGAAACGTGCAGAGCTCCGCAGCAAGCACAGCAAA
AACCTCCGGGTGAAAAAGCAGCAATAAACACTTCTCCACACAAAATTACT
TCGACGAGCGAGGCGTTTTCGCCGTCTGTATGCTCACTGGGCCTCTCATT
GTCCTCACGTGTCTCCAACTGGCCTCCATTTTCTTCTTTGTTTGTGGCCT
GGTCGCTGCGTCAGAACCCCTCAATACTCGGCTAAGAGAGAAGTGGTGGA
CGGTTTAGTGGCCTTTCACGTCCTCTTGTGGTTTCTCGTCATCGGCTTCC
GCAAGAACATGAACGTCCAGCCTTTGCCGCGGCGATTGATTGGGGCGAAC
GCTGGATCCAGGTCTTTAAGCTTGCCAGGGAACAAGGCGCTCAACCTGAG
GGTTTCTGGGAAAATGCACAGGATGGAGGAACTTGACGAAAGCCAAGCAG
GGCCTGCCTCGGCAGTATCAGAGGAAATGCAAAACTGGGCAGCGGAGCAG
TGCATCTTTCTCCACGCCGCGGCCACCATGTTGGTTCAAGTGAAACGTGC
AGAGCTCCGCAGCAAGCACAGCAAAAACCTCCGGGTGAAAAAGCAGCAAT
AAACACTTCTCCACACAAAATTACTTCGACGAGCGAGGCGTTTTCGCCGT
CTGTATGCTCACTGGGCCTCTCATTGTCCTCACGTGTCTCCAACTGGCCT
CCATTTTCTTCTTTGTTTGTGGCCTGGTCGCTGCGTCAGAACCCCTCAAT
ACTCGGCTAAGAGAGAAGTGGTGGACGGTTTAGTGGCCTTTCACGTCCTC
TTGTGGTTTCTCGTCATCGGCTTCCGCAAGAACATGAACGTCCAGCCTTT
GCCGCGGCGATTGATTGGGGCGAACGCTGGATCCAGGTCTTTAAGCTTGC
CAGGGAACAAGGCGCTCAACCTGAGGGTTTCTGGGAAAATGCACAGGATG
GAGGAACTTGACGAAAGCCAAGCAGGGCCTGCCTCGGCAGTATCAGAGGA
AATGCAAAACTGGGCAGCGGAGCAG

Synonyms

Publications